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David E. Draper - Publications

Affiliations: 
Chemistry Johns Hopkins University, Baltimore, MD 
Area:
RNA folding
Website:
http://www.chemistry.jhu.edu/Draper/biography.html

121/177 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Trachman RJ, Draper DE. Divalent ion competition reveals reorganization of an RNA ion atmosphere upon folding. Nucleic Acids Research. PMID 28115628 DOI: 10.1093/Nar/Gkw1327  0.618
2017 Stagno JR, Liu Y, Bhandari YR, Conrad CE, Panja S, Swain M, Fan L, Nelson G, Li C, Wendel DR, White TA, Coe JD, Wiedorn MO, Knoska J, Oberthuer D, ... ... Draper DE, et al. Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography Acta Crystallographica Section a Foundations and Advances. 73: a92-a92. DOI: 10.1107/S0108767317099081  0.398
2016 Stagno JR, Liu Y, Bhandari YR, Conrad CE, Panja S, Swain M, Fan L, Nelson G, Li C, Wendel DR, White TA, Coe JD, Wiedorn MO, Knoska J, Oberthuer D, ... ... Draper DE, et al. Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography. Nature. PMID 27841871 DOI: 10.1038/Nature20599  0.376
2015 Draper DE. Reflections on 20 years of RNA. Rna (New York, N.Y.). 21: 601-2. PMID 25780156 DOI: 10.1261/Rna.050930.115  0.637
2013 Trachman RJ, Draper DE. Comparison of interactions of diamine and Mg²⁺ with RNA tertiary structures: similar versus differential effects on the stabilities of diverse RNA folds. Biochemistry. 52: 5911-9. PMID 23899366 DOI: 10.1021/Bi400529Q  0.641
2013 Draper DE. Folding of RNA tertiary structure: Linkages between backbone phosphates, ions, and water. Biopolymers. 99: 1105-13. PMID 23568785 DOI: 10.1002/Bip.22249  0.519
2013 Trachman RJ, Draper DE. RNA Folding Landscapes in the Presence of Putrescine and Magnesium Biophysical Journal. 104: 411a. DOI: 10.1016/J.Bpj.2012.11.2293  0.642
2012 Lambert D, Draper DE. Denaturation of RNA secondary and tertiary structure by urea: simple unfolded state models and free energy parameters account for measured m-values. Biochemistry. 51: 9014-26. PMID 23088364 DOI: 10.1021/Bi301103J  0.589
2011 Leipply D, Draper DE. Evidence for a thermodynamically distinct Mg2+ ion associated with formation of an RNA tertiary structure. Journal of the American Chemical Society. 133: 13397-405. PMID 21776997 DOI: 10.1021/Ja2020923  0.856
2011 Leipply D, Draper DE. Effects of Mg2+ on the free energy landscape for folding a purine riboswitch RNA. Biochemistry. 50: 2790-9. PMID 21361309 DOI: 10.1021/Bi101948K  0.859
2010 Lambert D, Leipply D, Draper DE. The osmolyte TMAO stabilizes native RNA tertiary structures in the absence of Mg2+: evidence for a large barrier to folding from phosphate dehydration. Journal of Molecular Biology. 404: 138-57. PMID 20875423 DOI: 10.1016/J.Jmb.2010.09.043  0.868
2010 Leipply D, Draper DE. Dependence of RNA tertiary structural stability on Mg2+ concentration: interpretation of the Hill equation and coefficient. Biochemistry. 49: 1843-53. PMID 20112919 DOI: 10.1021/Bi902036J  0.862
2009 Leipply D, Lambert D, Draper DE. Ion-RNA interactions thermodynamic analysis of the effects of mono- and divalent ions on RNA conformational equilibria. Methods in Enzymology. 469: 433-63. PMID 20946802 DOI: 10.1016/S0076-6879(09)69021-2  0.862
2009 Chen AA, Draper DE, Pappu RV. Molecular simulation studies of monovalent counterion-mediated interactions in a model RNA kissing loop. Journal of Molecular Biology. 390: 805-19. PMID 19482035 DOI: 10.1016/J.Jmb.2009.05.071  0.549
2009 Lambert D, Leipply D, Shiman R, Draper DE. The influence of monovalent cation size on the stability of RNA tertiary structures. Journal of Molecular Biology. 390: 791-804. PMID 19427322 DOI: 10.1016/J.Jmb.2009.04.083  0.849
2009 Grilley D, Soto AM, Draper DE. Direct quantitation of Mg2+-RNA interactions by use of a fluorescent dye. Methods in Enzymology. 455: 71-94. PMID 19289203 DOI: 10.1016/S0076-6879(08)04203-1  0.862
2009 Chen AA, Draper DE, Pappu RV. Mechanism Of Monovalent Counterion Specificity In A RNA Kissing Loop Complex Biophysical Journal. 96: 576a. DOI: 10.1016/J.Bpj.2008.12.3008  0.511
2008 Draper DE. RNA folding: thermodynamic and molecular descriptions of the roles of ions. Biophysical Journal. 95: 5489-95. PMID 18835912 DOI: 10.1529/Biophysj.108.131813  0.525
2008 Iben JR, Draper DE. Specific interactions of the L10(L12)4 ribosomal protein complex with mRNA, rRNA, and L11. Biochemistry. 47: 2721-31. PMID 18247578 DOI: 10.1021/Bi701838Y  0.72
2007 Grilley D, Misra V, Caliskan G, Draper DE. Importance of partially unfolded conformations for Mg(2+)-induced folding of RNA tertiary structure: structural models and free energies of Mg2+ interactions. Biochemistry. 46: 10266-78. PMID 17705557 DOI: 10.1021/Bi062284R  0.829
2007 Lambert D, Draper DE. Effects of osmolytes on RNA secondary and tertiary structure stabilities and RNA-Mg2+ interactions. Journal of Molecular Biology. 370: 993-1005. PMID 17555763 DOI: 10.1016/J.Jmb.2007.03.080  0.63
2007 Soto AM, Misra V, Draper DE. Tertiary structure of an RNA pseudoknot is stabilized by "diffuse" Mg2+ ions. Biochemistry. 46: 2973-83. PMID 17315982 DOI: 10.1021/Bi0616753  0.636
2007 Lee D, Walsh JD, Yu P, Markus MA, Choli-Papadopoulou T, Schwieters CD, Krueger S, Draper DE, Wang YX. The structure of free L11 and functional dynamics of L11 in free, L11-rRNA(58 nt) binary and L11-rRNA(58 nt)-thiostrepton ternary complexes. Journal of Molecular Biology. 367: 1007-22. PMID 17292917 DOI: 10.1016/J.Jmb.2007.01.013  0.482
2006 Grilley D, Soto AM, Draper DE. Mg2+-RNA interaction free energies and their relationship to the folding of RNA tertiary structures. Proceedings of the National Academy of Sciences of the United States of America. 103: 14003-8. PMID 16966612 DOI: 10.1073/Pnas.0606409103  0.865
2006 Maeder C, Conn GL, Draper DE. Optimization of a ribosomal structural domain by natural selection. Biochemistry. 45: 6635-43. PMID 16716074 DOI: 10.1021/Bi052544P  0.788
2005 Maeder C, Draper DE. A small protein unique to bacteria organizes rRNA tertiary structure over an extensive region of the 50 S ribosomal subunit. Journal of Molecular Biology. 354: 436-46. PMID 16246363 DOI: 10.1016/J.Jmb.2005.09.072  0.734
2005 Bausch SL, Poliakova E, Draper DE. Interactions of the N-terminal domain of ribosomal protein L11 with thiostrepton and rRNA. The Journal of Biological Chemistry. 280: 29956-63. PMID 15972821 DOI: 10.1074/Jbc.M504182200  0.773
2005 Phelps SS, Joseph S, Draper DE. Non-bridging phosphate oxygen atoms within the tRNA anticodon stem-loop are essential for ribosomal a site binding and translocation Journal of Molecular Biology. 349: 288-301. PMID 15890196 DOI: 10.1016/J.Jmb.2005.03.079  0.331
2005 Draper DE, Grilley D, Soto AM. Ions and RNA folding. Annual Review of Biophysics and Biomolecular Structure. 34: 221-43. PMID 15869389 DOI: 10.1146/Annurev.Biophys.34.040204.144511  0.838
2005 Dunstan MS, Guhathakurta D, Draper DE, Conn GL. Coevolution of protein and RNA structures within a highly conserved ribosomal domain. Chemistry & Biology. 12: 201-6. PMID 15734647 DOI: 10.1016/J.Chembiol.2004.11.019  0.853
2004 Draper DE. A guide to ions and RNA structure. Rna (New York, N.Y.). 10: 335-43. PMID 14970378 DOI: 10.1261/Rna.5205404  0.594
2003 García-García C, Draper DE. Electrostatic interactions in a peptide--RNA complex. Journal of Molecular Biology. 331: 75-88. PMID 12875837 DOI: 10.1016/S0022-2836(03)00615-6  0.789
2003 Misra VK, Shiman R, Draper DE. A thermodynamic framework for the magnesium-dependent folding of RNA. Biopolymers. 69: 118-36. PMID 12717727 DOI: 10.1002/Bip.10353  0.647
2002 Conn GL, Gittis AG, Lattman EE, Misra VK, Draper DE. A compact RNA tertiary structure contains a buried backbone-K+ complex. Journal of Molecular Biology. 318: 963-73. PMID 12054794 DOI: 10.1016/S0022-2836(02)00147-X  0.782
2002 Misra VK, Draper DE. The linkage between magnesium binding and RNA folding. Journal of Molecular Biology. 317: 507-21. PMID 11955006 DOI: 10.1006/Jmbi.2002.5422  0.634
2001 Draper DE, Bukhman YV, Gluick TC. Thermal methods for the analysis of RNA folding pathways. Current Protocols in Nucleic Acid Chemistry / Edited by Serge L. Beaucage ... [Et Al.]. Unit 11.3. PMID 18428829 DOI: 10.1002/0471142700.Nc1103S02  0.574
2001 Misra VK, Draper DE. A thermodynamic framework for Mg2+ binding to RNA. Proceedings of the National Academy of Sciences of the United States of America. 98: 12456-61. PMID 11675490 DOI: 10.1073/Pnas.221234598  0.641
2001 Schlax PJ, Xavier KA, Gluick TC, Draper DE. Translational repression of the Escherichia coli alpha operon mRNA: importance of an mRNA conformational switch and a ternary entrapment complex. The Journal of Biological Chemistry. 276: 38494-501. PMID 11504736 DOI: 10.1074/Jbc.M106934200  0.456
2001 Gerstner RB, Pak Y, Draper DE. Recognition of 16S rRNA by ribosomal protein S4 from Bacillus stearothermophilus. Biochemistry. 40: 7165-73. PMID 11401563 DOI: 10.1021/Bi010026I  0.837
2000 Sayers EW, Gerstner RB, Draper DE, Torchia DA. Structural preordering in the N-terminal region of ribosomal protein S4 revealed by heteronuclear NMR spectroscopy. Biochemistry. 39: 13602-13. PMID 11063598 DOI: 10.1021/Bi0013391  0.828
2000 Shiman R, Draper DE. Stabilization of RNA tertiary structure by monovalent cations. Journal of Molecular Biology. 302: 79-91. PMID 10964562 DOI: 10.1006/Jmbi.2000.4031  0.622
2000 Misra VK, Draper DE. Mg(2+) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model. Journal of Molecular Biology. 299: 813-25. PMID 10835286 DOI: 10.1006/Jmbi.2000.3769  0.568
2000 Blyn LB, Risen LM, Griffey RH, Draper DE. The RNA-binding domain of ribosomal protein L11 recognizes an rRNA tertiary structure stabilized by both thiostrepton and magnesium ion. Nucleic Acids Research. 28: 1778-84. PMID 10734197 DOI: 10.1093/Nar/28.8.1778  0.682
2000 GuhaThakurta D, Draper DE. Contributions of basic residues to ribosomal protein L11 recognition of RNA. Journal of Molecular Biology. 295: 569-80. PMID 10623547 DOI: 10.1006/Jmbi.1999.3372  0.847
2000 Markus M, Gerstner R, Draper D, Torchia D. 1H, 13C, and 15N Chemical Shift Assignments for Ribosomal Protein S4 delta 41 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr4577  0.772
1999 Misra VK, Draper DE. The interpretation of Mg(2+) binding isotherms for nucleic acids using Poisson-Boltzmann theory. Journal of Molecular Biology. 294: 1135-47. PMID 10600372 DOI: 10.1006/Jmbi.1999.3334  0.434
1999 Draper DE. Themes in RNA-protein recognition. Journal of Molecular Biology. 293: 255-70. PMID 10550207 DOI: 10.1006/Jmbi.1999.2991  0.634
1999 Markus MA, Gerstner RB, Draper DE, Torchia DA. Refining the overall structure and subdomain orientation of ribosomal protein S4 delta41 with dipolar couplings measured by NMR in uniaxial liquid crystalline phases. Journal of Molecular Biology. 292: 375-87. PMID 10493882 DOI: 10.1006/Jmbi.1999.3061  0.824
1999 Murthy VL, Srinivasan R, Draper DE, Rose GD. A complete conformational map for RNA. Journal of Molecular Biology. 291: 313-27. PMID 10438623 DOI: 10.1006/Jmbi.1999.2958  0.485
1999 Conn GL, Draper DE, Lattman EE, Gittis AG. Crystal structure of a conserved ribosomal protein-RNA complex. Science (New York, N.Y.). 284: 1171-4. PMID 10325228 DOI: 10.1126/Science.284.5417.1171  0.823
1999 GuhaThakurta D, Draper DE. Protein-RNA sequence covariation in a ribosomal protein-rRNA complex. Biochemistry. 38: 3633-40. PMID 10090750 DOI: 10.1021/Bi9826411  0.852
1999 Draper DE, Reynaldo LP. RNA binding strategies of ribosomal proteins. Nucleic Acids Research. 27: 381-8. PMID 9862955 DOI: 10.1093/Nar/27.2.381  0.838
1998 Misra VK, Draper DE. On the role of magnesium ions in RNA stability. Biopolymers. 48: 113-35. PMID 10333741 DOI: 10.1002/(Sici)1097-0282(1998)48:2<113::Aid-Bip3>3.0.Co;2-Y  0.618
1998 Draper DE, Misra VK. RNA shows its metal. Nature Structural Biology. 5: 927-30. PMID 9808031 DOI: 10.1038/2901  0.607
1998 Conn GL, Gutell RR, Draper DE. A functional ribosomal RNA tertiary structure involves a base triple interaction. Biochemistry. 37: 11980-8. PMID 9718323 DOI: 10.1021/Bi980825+  0.805
1998 Markus MA, Gerstner RB, Draper DE, Torchia DA. The solution structure of ribosomal protein S4 delta41 reveals two subdomains and a positively charged surface that may interact with RNA. The Embo Journal. 17: 4559-71. PMID 9707416 DOI: 10.1093/Emboj/17.16.4559  0.865
1998 Davies C, Gerstner RB, Draper DE, Ramakrishnan V, White SW. The crystal structure of ribosomal protein S4 reveals a two-domain molecule with an extensive RNA-binding surface: one domain shows structural homology to the ETS DNA-binding motif. The Embo Journal. 17: 4545-58. PMID 9707415 DOI: 10.1093/Emboj/17.16.4545  0.849
1998 Conn GL, Draper DE. RNA structure. Current Opinion in Structural Biology. 8: 278-85. PMID 9666322 DOI: 10.1016/S0959-440X(98)80059-6  0.782
1998 Draper DE, Gluick TC, Schlax PJ. Pseudoknots, RNA Folding, and Translational Regulation Cold Spring Harbor Monograph Archive. 35: 415-436. DOI: 10.1101/087969509.35.415  0.469
1997 Gluick TC, Wills NM, Gesteland RF, Draper DE. Folding of an mRNA pseudoknot required for stop codon readthrough: effects of mono- and divalent ions on stability. Biochemistry. 36: 16173-86. PMID 9405051 DOI: 10.1021/Bi971362V  0.475
1997 Hinck AP, Markus MA, Huang S, Grzesiek S, Kustonovich I, Draper DE, Torchia DA. The RNA binding domain of ribosomal protein L11: three-dimensional structure of the RNA-bound form of the protein and its interaction with 23 S rRNA. Journal of Molecular Biology. 274: 101-13. PMID 9398519 DOI: 10.1006/Jmbi.1997.1379  0.651
1997 Bukhman YV, Draper DE. Affinities and selectivities of divalent cation binding sites within an RNA tertiary structure. Journal of Molecular Biology. 273: 1020-31. PMID 9367788 DOI: 10.1006/Jmbi.1997.1383  0.59
1997 Rogers MJ, Bukhman YV, McCutchan TF, Draper DE. Interaction of thiostrepton with an RNA fragment derived from the plastid-encoded ribosomal RNA of the malaria parasite. Rna (New York, N.Y.). 3: 815-20. PMID 9257641  0.399
1997 Gluick TC, Gerstner RB, Draper DE. Effects of Mg2+, K+, and H+ on an equilibrium between alternative conformations of an RNA pseudoknot. Journal of Molecular Biology. 270: 451-63. PMID 9237910 DOI: 10.1006/Jmbi.1997.1119  0.847
1997 Sapag A, Draper DE. In vitro evolution used to define a protein recognition site within a large RNA domain. Bioorganic & Medicinal Chemistry. 5: 1097-105. PMID 9222503 DOI: 10.1016/S0968-0896(97)00045-X  0.552
1997 Markus MA, Hinck AP, Huang S, Draper DE, Torchia DA. High resolution solution structure of ribosomal protein L11-C76, a helical protein with a flexible loop that becomes structured upon binding to RNA. Nature Structural Biology. 4: 70-7. PMID 8989327 DOI: 10.1038/Nsb0197-70  0.616
1997 Xing Y, Guha Thakurta D, Draper DE. The RNA binding domain of ribosomal protein L11 is structurally similar to homeodomains. Nature Structural Biology. 4: 24-7. PMID 8989317 DOI: 10.1038/Nsb0197-24  0.569
1996 Wang YX, Huang S, Draper DE. Structure of a U.U pair within a conserved ribosomal RNA hairpin. Nucleic Acids Research. 24: 2666-72. PMID 8758993 DOI: 10.1093/Nar/24.14.2666  0.483
1996 Draper DE. Strategies for RNA folding. Trends in Biochemical Sciences. 21: 145-9. PMID 8701472 DOI: 10.1016/S0968-0004(96)80169-1  0.622
1996 Xing Y, Draper DE. Cooperative interactions of RNA and thiostrepton antibiotic with two domains of ribosomal protein L11. Biochemistry. 35: 1581-8. PMID 8634289 DOI: 10.1021/Bi952132O  0.636
1996 Huang S, Wang YX, Draper DE. Structure of a hexanucleotide RNA hairpin loop conserved in ribosomal RNAs. Journal of Molecular Biology. 258: 308-21. PMID 8627628 DOI: 10.1006/Jmbi.1996.0252  0.476
1995 Draper DE, Xing Y. Protein recognition of a ribosomal RNA tertiary structure. Nucleic Acids Symposium Series. 5-7. PMID 8643396  0.596
1995 Gluick TC, Gerstner RB, Draper DE. A conformational switch in a regulated mRNA involves tertiary structure. Nucleic Acids Symposium Series. 200-2. PMID 8643369  0.81
1995 Draper DE, Gluick TC. Melting studies of RNA unfolding and RNA-ligand interactions. Methods in Enzymology. 259: 281-305. PMID 8538459 DOI: 10.1016/0076-6879(95)59049-8  0.611
1995 Xing Y, Draper DE. Stabilization of a ribosomal RNA tertiary structure by ribosomal protein L11. Journal of Molecular Biology. 249: 319-31. PMID 7783196 DOI: 10.1006/Jmbi.1995.0299  0.656
1995 Draper DE. Protein-RNA recognition. Annual Review of Biochemistry. 64: 593-620. PMID 7574494 DOI: 10.1146/Annurev.Bi.64.070195.003113  0.643
1995 Lu M, Draper DE. On the role of rRNA tertiary structure in recognition of ribosomal protein L11 and thiostrepton. Nucleic Acids Research. 23: 3426-33. PMID 7567452 DOI: 10.1093/Nar/23.17.3426  0.658
1995 Baker AM, Draper DE. Messenger RNA recognition by fragments of ribosomal protein S4. The Journal of Biological Chemistry. 270: 22939-45. PMID 7559430 DOI: 10.1074/Jbc.270.39.22939  0.587
1995 Draper DE, Xing Y, Laing LG. Thermodynamics of RNA unfolding: stabilization of a ribosomal RNA tertiary structure by thiostrepton and ammonium ion. Journal of Molecular Biology. 249: 231-8. PMID 7540210 DOI: 10.1006/Jmbi.1995.0291  0.871
1995 Kebbekus P, Draper DE, Hagerman P. Persistence length of RNA. Biochemistry. 34: 4354-7. PMID 7535562 DOI: 10.1021/Bi00013A026  0.572
1995 Morse SE, Draper DE. Purine-purine mismatches in RNA helices: evidence for protonated G.A pairs and next-nearest neighbor effects. Nucleic Acids Research. 23: 302-6. PMID 7532297 DOI: 10.1093/Nar/23.2.302  0.379
1994 Laing LG, Gluick TC, Draper DE. Stabilization of RNA structure by Mg ions. Specific and non-specific effects. Journal of Molecular Biology. 237: 577-87. PMID 8158638 DOI: 10.1006/Jmbi.1994.1256  0.867
1994 Tang RS, Draper DE. Bend and helical twist associated with a symmetric internal loop from 5S ribosomal RNA. Biochemistry. 33: 10089-93. PMID 8060977 DOI: 10.1021/Bi00199A036  0.526
1994 Lu M, Draper DE. Bases defining an ammonium and magnesium ion-dependent tertiary structure within the large subunit ribosomal RNA. Journal of Molecular Biology. 244: 572-85. PMID 7527467 DOI: 10.1006/Jmbi.1994.1753  0.582
1994 Gluick TC, Draper DE. Thermodynamics of folding a pseudoknotted mRNA fragment. Journal of Molecular Biology. 241: 246-62. PMID 7520082 DOI: 10.1006/Jmbi.1994.1493  0.588
1994 Laing LG, Draper DE. Thermodynamics of RNA folding in a conserved ribosomal RNA domain. Journal of Molecular Biology. 237: 560-76. PMID 7512652 DOI: 10.1006/Jmbi.1994.1255  0.856
1994 Tang RS, Draper DE. On the use of phasing experiments to measure helical repeat and bulge loop-associated twist in RNA. Nucleic Acids Research. 22: 835-41. PMID 7511222 DOI: 10.1093/Nar/22.5.835  0.525
1993 Wang YX, Lu M, Draper DE. Specific ammonium ion requirement for functional ribosomal RNA tertiary structure. Biochemistry. 32: 12279-82. PMID 8241113 DOI: 10.1021/Bi00097A002  0.649
1993 Spedding G, Draper DE. Allosteric mechanism for translational repression in the Escherichia coli alpha operon. Proceedings of the National Academy of Sciences of the United States of America. 90: 4399-403. PMID 7685102 DOI: 10.1073/Pnas.90.10.4399  0.413
1993 Spedding G, Gluick TC, Draper DE. Ribosome initiation complex formation with the pseudoknotted alpha operon messenger RNA. Journal of Molecular Biology. 229: 609-22. PMID 7679446 DOI: 10.1006/Jmbi.1993.1067  0.495
1992 Ten Dam E, Pleij K, Draper D. Structural and functional aspects of RNA pseudoknots Biochemistry. 31: 11665-11676. PMID 1280160 DOI: 10.1021/Bi00162A001  0.563
1992 Gluick TC, Draper DE. Tertiary structure of ribosomal RNA Current Opinion in Structural Biology. 2: 338-344. DOI: 10.1016/0959-440X(92)90223-T  0.654
1992 Draper DE. The RNA-folding problem Accounts of Chemical Research. 25: 201-207.  0.437
1991 Ryan PC, Draper DE. Detection of a key tertiary interaction in the highly conserved GTPase center of large subunit ribosomal RNA. Proceedings of the National Academy of Sciences of the United States of America. 88: 6308-12. PMID 2068110  0.574
1991 Ryan PC, Lu M, Draper DE. Recognition of the highly conserved GTPase center of 23 S ribosomal RNA by ribosomal protein L11 and the antibiotic thiostrepton. Journal of Molecular Biology. 221: 1257-68. PMID 1942050 DOI: 10.1016/0022-2836(91)90932-V  0.662
1990 Sapag A, Vartikar JV, Draper DE. Dissection of the 16S rRNA binding site for ribosomal protein S4. Biochimica Et Biophysica Acta. 1050: 34-7. PMID 2207164 DOI: 10.1016/0167-4781(90)90137-Q  0.458
1990 Tang CK, Draper DE. Evidence for allosteric coupling between the ribosome and repressor binding sites of a translationally regulated mRNA. Biochemistry. 29: 4434-9. PMID 2112408 DOI: 10.1021/Bi00470A025  0.418
1990 Tang RS, Draper DE. Bulge loops used to measure the helical twist of RNA in solution. Biochemistry. 29: 5232-7. PMID 1696495 DOI: 10.1021/Bi00474A003  0.583
1989 Vartikar JV, Draper DE. S4-16 S ribosomal RNA complex. Binding constant measurements and specific recognition of a 460-nucleotide region. Journal of Molecular Biology. 209: 221-34. PMID 2685320 DOI: 10.1016/0022-2836(89)90274-X  0.557
1989 Draper DE. How do proteins recognize specific RNA sites? New clues from autogenously regulated ribosomal proteins. Trends in Biochemical Sciences. 14: 335-8. PMID 2678632 DOI: 10.1016/0968-0004(89)90167-9  0.627
1989 White SA, Draper DE. Effects of single-base bulges on intercalator binding to small RNA and DNA hairpins and a ribosomal RNA fragment. Biochemistry. 28: 1892-7. PMID 2655698 DOI: 10.1021/Bi00430A069  0.739
1989 Ryan PC, Draper DE. Thermodynamics of protein-RNA recognition in a highly conserved region of the large-subunit ribosomal RNA. Biochemistry. 28: 9949-56. PMID 2620068 DOI: 10.1021/Bi00452A012  0.631
1989 Tang CK, Draper DE. Unusual mRNA pseudoknot structure is recognized by a protein translational repressor. Cell. 57: 531-6. PMID 2470510 DOI: 10.1016/0092-8674(89)90123-2  0.571
1988 Draper DE, White SA, Kean JM. Preparation of specific ribosomal RNA fragments. Methods in Enzymology. 164: 221-37. PMID 3071664 DOI: 10.1016/S0076-6879(88)64045-6  0.701
1988 Draper DE, Deckman IC, Vartikar JV. Physical studies of ribosomal protein-RNA interactions. Methods in Enzymology. 164: 203-20. PMID 3071663 DOI: 10.1016/S0076-6879(88)64044-4  0.601
1987 Deckman IC, Draper DE. S4-alpha mRNA translation regulation complex. II. Secondary structures of the RNA regulatory site in the presence and absence of S4. Journal of Molecular Biology. 196: 323-32. PMID 2443720 DOI: 10.1016/0022-2836(87)90693-0  0.51
1987 Deckman IC, Draper DE, Thomas MS. S4-alpha mRNA translation repression complex. I. Thermodynamics of formation. Journal of Molecular Biology. 196: 313-22. PMID 2443719 DOI: 10.1016/0022-2836(87)90692-9  0.465
1987 White SA, Draper DE. Single base bulges in small RNA hairpins enhance ethidium binding and promote an allosteric transition. Nucleic Acids Research. 15: 4049-64. PMID 2438651 DOI: 10.1093/Nar/15.10.4049  0.739
1986 Lowman HB, Draper DE. On the recognition of helical RNA by cobra venom V1 nuclease. The Journal of Biological Chemistry. 261: 5396-403. PMID 2420800  0.503
1985 Draper DE. On the coordination properties of Eu3+ bound to tRNA. Biophysical Chemistry. 21: 91-101. PMID 3978219 DOI: 10.1016/0301-4622(85)85011-0  0.384
1985 Kean JM, White SA, Draper DE. Detection of high-affinity intercalator sites in a ribosomal RNA fragment by the affinity cleavage intercalator methidiumpropyl-EDTA-iron(II). Biochemistry. 24: 5062-70. PMID 3935157 DOI: 10.1021/Bi00340A016  0.731
1985 Deckman IC, Draper DE. Specific interaction between ribosomal protein S4 and the alpha operon messenger RNA. Biochemistry. 24: 7860-5. PMID 3912010 DOI: 10.1021/Bi00348A002  0.526
1985 Kean JM, Draper DE. Secondary structure of a 345-base RNA fragment covering the S8/S15 protein binding domain of Escherichia coli 16S ribosomal RNA. Biochemistry. 24: 5052-61. PMID 3907698 DOI: 10.1021/Bi00340A015  0.639
1984 Draper DE. Attachment of reporter groups to specific, selected cytidine residues in RNA using a bisulfite-catalyzed transamination reaction. Nucleic Acids Research. 12: 989-1002. PMID 6198634 DOI: 10.1093/Nar/12.2.989  0.541
1984 Draper DE. Attachment of reporter groups to specific, selected cytidine residues in RNA using a bisulfitecatalyzed transamination reaction Nucleic Acids Research. 12: 989-1002. DOI: 10.1093/nar/12.2.989  0.378
1979 Draper DE, von Hippel PH. Interaction of Escherichia coli ribosomal protein S1 with ribosomes. Proceedings of the National Academy of Sciences of the United States of America. 76: 1040-4. PMID 375222  0.636
1979 Draper DE, von Hippel PH. Measurement of macromolecular equilibrium binding constants by a sucrose gradient band sedimentation method. Application to protein-nucleic acid interactions. Biochemistry. 18: 753-60. PMID 369606 DOI: 10.1021/Bi00572A003  0.573
1978 Draper DE, von Hippel PH. Nucleic acid binding properties of Escherichia coli ribosomal protein S1. II. Co-operativity and specificity of binding site II. Journal of Molecular Biology. 122: 339-59. PMID 357732 DOI: 10.1016/0022-2836(78)90194-8  0.543
1978 Draper DE, von Hippel PH. Nucleic acid binding properties of Escherichia coli ribosomal protein S1. I. Structure and interactions of binding site I. Journal of Molecular Biology. 122: 321-38. PMID 357731 DOI: 10.1016/0022-2836(78)90193-6  0.593
1978 Draper DE, Von Hippel PH. Determination of co-operativity parameters for nucleic acid binding proteins using oligonucleotides of defined length Journal of Molecular Biology. 122: 355-359.  0.519
1977 Draper DE, Pratt CW, von Hippel PH. Escherichia coli ribosomal protein S1 has two polynucleotide binding sites. Proceedings of the National Academy of Sciences of the United States of America. 74: 4786-90. PMID 337301  0.645
Low-probability matches (unlikely to be authored by this person)
1980 Draper DE, Gold L. A method for linking fluorescent labels to polynucleotides: application to studies of ribosome-ribonucleic acid interactions. Biochemistry. 19: 1774-81. PMID 6990982 DOI: 10.1021/Bi00550A008  0.26
1993 Draper DE. Protein-DNA complexes: the cost of recognition. Proceedings of the National Academy of Sciences of the United States of America. 90: 7429-30. PMID 8356038 DOI: 10.1073/Pnas.90.16.7429  0.247
2002 Lattman EE, Draper DE. Review of the sixth Annual Johns Hopkins Folding Meeting. Proteins. 46: 237-42. PMID 11835498 DOI: 10.1002/Prot.10023  0.238
2012 Soto AM, Draper D. White gels: an easy way to preserve methylene blue stained gels. Analytical Biochemistry. 421: 345-6. PMID 22107889 DOI: 10.1016/J.Ab.2011.10.048  0.238
1990 Draper DE. Pseudoknots and the control of protein synthesis. Current Opinion in Cell Biology. 2: 1099-103. PMID 2099803 DOI: 10.1016/0955-0674(90)90162-8  0.145
2009 Stevens DJ, Walter ED, Rodríguez A, Draper D, Davies P, Brown DR, Millhauser GL. Early onset prion disease from octarepeat expansion correlates with copper binding properties. Plos Pathogens. 5: e1000390. PMID 19381258 DOI: 10.1371/Journal.Ppat.1000390  0.143
2023 Riofrío M, Naranjo C, Mendoza A, Draper D, Marques I. Genetic diversity and structure in two epiphytic orchids from the montane forests of southern Ecuador: The role of overcollection on Masdevallia rosea in comparison with the widespread Pleurothallis lilijae. Plos One. 18: e0290604. PMID 37713402 DOI: 10.1371/journal.pone.0290604  0.081
2007 Kuzniewicz M, Draper D, Escobar GJ. Incorporation of physiological trend and interaction effects in neonatal severity of illness scores: an experiment using a variant of the Richardson score. Intensive Care Medicine. 33: 1602-8. PMID 17576539 DOI: 10.1007/s00134-007-0714-z  0.081
2018 Morente-López J, García C, Lara-Romero C, García-Fernández A, Draper D, Iriondo JM. Geography and Environment Shape Landscape Genetics of Mediterranean Alpine Species Poiret. (Caryophyllaceae). Frontiers in Plant Science. 9: 1698. PMID 30538712 DOI: 10.3389/Fpls.2018.01698  0.079
2014 Marques I, Draper D, Iriondo JM. Costs and benefits of the mixed-mating system of Narcissus serotinus (Amaryllidaceae) in the conservation of small fragmented populations Botany. 92: 113-122. DOI: 10.1139/Cjb-2013-0197  0.077
2007 Marques I, Rosselló-Graell A, Draper D, Iriondo JM. Pollination patterns limit hybridization between two sympatric species of Narcissus (Amaryllidaceae). American Journal of Botany. 94: 1352-9. PMID 21636503 DOI: 10.3732/Ajb.94.8.1352  0.074
2020 Houskeeper HF, Draper D, Kudela RM, Boss E. Chlorophyll absorption and phytoplankton size information inferred from hyperspectral particulate beam attenuation. Applied Optics. 59: 6765-6773. PMID 32749383 DOI: 10.1364/Ao.396832  0.056
2002 Horenstein MS, Humes R, Epstein ML, Draper D. Loffler's endocarditis presenting in 2 children as fever with eosinophilia. Pediatrics. 110: 1014-8. PMID 12415045  0.049
2015 Bone WP, Washington NL, Buske OJ, Adams DR, Davis J, Draper D, Flynn ED, Girdea M, Godfrey R, Golas G, Groden C, Jacobsen J, Köhler S, Lee EM, Links AE, et al. Computational evaluation of exome sequence data using human and model organism phenotypes improves diagnostic efficiency. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 26562225 DOI: 10.1038/Gim.2015.137  0.048
2014 Marques I, Draper D, Riofrío L, Naranjo C. Multiple hybridization events, polyploidy and low postmating isolation entangle the evolution of neotropical species of Epidendrum (Orchidaceae). Bmc Evolutionary Biology. 14: 20. PMID 24495351 DOI: 10.1186/1471-2148-14-20  0.046
2014 Pinheiro F, Cozzolino S, Draper D, de Barros F, Félix LP, Fay MF, Palma-Silva C. Rock outcrop orchids reveal the genetic connectivity and diversity of inselbergs of northeastern Brazil. Bmc Evolutionary Biology. 14: 49. PMID 24629134 DOI: 10.1186/1471-2148-14-49  0.042
2017 Gall T, Valkanas E, Bello C, Markello T, Adams C, Bone WP, Brandt AJ, Brazill JM, Carmichael L, Davids M, Davis J, Diaz-Perez Z, Draper D, Elson J, Flynn ED, et al. Defining Disease, Diagnosis, and Translational Medicine within a Homeostatic Perturbation Paradigm: The National Institutes of Health Undiagnosed Diseases Program Experience. Frontiers in Medicine. 4: 62. PMID 28603714 DOI: 10.3389/Fmed.2017.00062  0.04
2018 Terenin A, Magnusson M, Jonsson L, Draper D. Pólya Urn Latent Dirichlet Allocation: a doubly sparse massively parallel sampler. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 29994329 DOI: 10.1109/TPAMI.2018.2832641  0.04
2009 Draper DE. Identity, retention, and survival: Contexts for the performance of native Choctaw music Music of the First Nations: Tradition and Innovation in Native North America. 67-91.  0.04
2016 Links AE, Draper D, Lee E, Guzman J, Valivullah Z, Maduro V, Lebedev V, Didenko M, Tomlin G, Brudno M, Girdea M, Dumitriu S, Haendel MA, Mungall CJ, Smedley D, et al. Distributed Cognition and Process Management Enabling Individualized Translational Research: The NIH Undiagnosed Diseases Program Experience. Frontiers in Medicine. 3: 39. PMID 27785453 DOI: 10.3389/Fmed.2016.00039  0.038
2018 MacPhail AJC, Au IP, Chan M, Mak DN, An WW, Chan ZY, Zhang JH, Wong K, So A, Chan N, Kwok C, Lau P, Draper D, Cheung RT. Type effect of inhibitory KT tape on measured vs. perceived maximal grip strength. Journal of Bodywork and Movement Therapies. 22: 639-642. PMID 30100290 DOI: 10.1016/J.Jbmt.2017.10.011  0.035
2020 Green J, Draper D, Boardsen S, Dong C. When the Moon had a magnetosphere. Science Advances. 6. PMID 33055162 DOI: 10.1126/sciadv.abc0865  0.035
2021 Reyes HC, Draper D, Marques I. Pollination in the Rainforest: Scarce Visitors and Low Effective Pollinators Limit the Fruiting Success of Tropical Orchids. Insects. 12. PMID 34680625 DOI: 10.3390/insects12100856  0.032
2015 Guzman J, Lee E, Draper D, Valivullah Z, Yu G, Sincan M, Gahl WA, Adams DR. The Undiagnosed Diseases Program Integrated Collaboration System (UDPICS): One Program's Experience Developing Custom Software to Support Research for Complex-Disease Families. Children (Basel, Switzerland). 2: 342-57. PMID 27417368 DOI: 10.3390/Children2030342  0.03
2017 Escobar GJ, Baker JM, Turk BJ, Draper D, Liu V, Kipnis P. Comparing Hospital Processes and Outcomes in California Medicare Beneficiaries: Simulation Prompts Reconsideration. The Permanente Journal. 21. PMID 29035176 DOI: 10.7812/TPP/16-084  0.03
1978 Draper D. Proposal for a Master of Arts Degree in American Indian Studies American Indian Culture and Research Journal. 2: 20-23. DOI: 10.17953/AICR.02.3-4.F60L48725QV70K57  0.03
2009 Aragon-Ching JB, Jain L, Gulley JL, Arlen PM, Wright JJ, Steinberg SM, Draper D, Venitz J, Jones E, Chen CC, Figg WD, Dahut WL. Final analysis of a phase II trial using sorafenib for metastatic castration-resistant prostate cancer. Bju International. 103: 1636-40. PMID 19154507 DOI: 10.1111/J.1464-410X.2008.08327.X  0.027
2020 Petterson S, Plancher K, Klyve D, Draper D, Ortiz R. Low-Intensity Continuous Ultrasound for the Symptomatic Treatment of Upper Shoulder and Neck Pain: A Randomized, Double-Blind Placebo-Controlled Clinical Trial. Journal of Pain Research. 13: 1277-1287. PMID 32606899 DOI: 10.2147/Jpr.S247463  0.025
2013 Profit J, Gould JB, Draper D, Zupancic JA, Kowalkowski MA, Woodard L, Pietz K, Petersen LA. Variations in definitions of mortality have little influence on neonatal intensive care unit performance ratings. The Journal of Pediatrics. 162: 50-5.e2. PMID 22854328 DOI: 10.1016/j.jpeds.2012.06.002  0.025
2021 Edwards EM, Greenberg LT, Profit J, Draper D, Helkey D, Horbar JD. Quality of Care in US NICUs by Race and Ethnicity. Pediatrics. PMID 34301773 DOI: 10.1542/peds.2020-037622  0.024
2021 Abeli T, Albani Rocchetti G, Barina Z, Bazos I, Draper D, Grillas P, Iriondo JM, Laguna E, Moreno-Saiz JC, Bartolucci F. Seventeen 'extinct' plant species back to conservation attention in Europe. Nature Plants. PMID 33686227 DOI: 10.1038/s41477-021-00878-1  0.024
1981 Draper DE. Choctaw-Chickasaw Dance Songs Ethnomusicology. 25: 553. DOI: 10.2307/851575  0.023
2010 Kipnis P, Escobar GJ, Draper D. Effect of choice of estimation method on inter-hospital mortality rate comparisons. Medical Care. 48: 458-65. PMID 20393365 DOI: 10.1097/MLR.0b013e3181d5fe8f  0.021
1996 Draper DE. Parallel worlds. Nature Structural Biology. 3: 397-400. PMID 8612065  0.02
2014 Newman TB, Draper D, Puopolo KM, Wi S, Escobar GJ. Combining immature and total neutrophil counts to predict early onset sepsis in term and late preterm newborns: use of the I/T2. The Pediatric Infectious Disease Journal. 33: 798-802. PMID 24503598 DOI: 10.1097/INF.0000000000000297  0.019
2013 Profit J, Zupancic JA, Gould JB, Pietz K, Kowalkowski MA, Draper D, Hysong SJ, Petersen LA. Correlation of neonatal intensive care unit performance across multiple measures of quality of care. Jama Pediatrics. 167: 47-54. PMID 23403539 DOI: 10.1001/Jamapediatrics.2013.418  0.019
2018 Mak DN, Au IP, Chan M, Chan ZY, An WW, Zhang JH, Draper D, Cheung RT. Placebo effect of facilitatory Kinesio tape on muscle activity and muscle strength. Physiotherapy Theory and Practice. 1-6. PMID 29461139 DOI: 10.1080/09593985.2018.1441936  0.019
2014 Profit J, Kowalkowski MA, Zupancic JA, Pietz K, Richardson P, Draper D, Hysong SJ, Thomas EJ, Petersen LA, Gould JB. Baby-MONITOR: a composite indicator of NICU quality. Pediatrics. 134: 74-82. PMID 24918221 DOI: 10.1542/Peds.2013-3552  0.019
2020 Sérgio C, Draper D, Porley RD. Three new records of Anthocerotophyta for Western Africa (Sierra Leone) based on spore ornamentation of a specimen collected by A. Harrington, with an emphasis on Anthoceros sect. Fusiformes Grolle Journal of Bryology. 42: 160-168. DOI: 10.1080/03736687.2019.1709022  0.017
2019 Horbar JD, Edwards EM, Greenberg LT, Profit J, Draper D, Helkey D, Lorch SA, Lee HC, Phibbs CS, Rogowski J, Gould JB, Firebaugh G. Racial Segregation and Inequality in the Neonatal Intensive Care Unit for Very Low-Birth-Weight and Very Preterm Infants. Jama Pediatrics. PMID 30907924 DOI: 10.1001/Jamapediatrics.2019.0241  0.016
2019 Alsamman MA, Draper D. Nonmetastatic renal cell carcinoma presenting with persistent cough: Case report with literature review. Avicenna Journal of Medicine. 9: 160-163. PMID 31903392 DOI: 10.4103/ajm.AJM_47_19  0.016
2010 Newman TB, Puopolo KM, Wi S, Draper D, Escobar GJ. Interpreting complete blood counts soon after birth in newborns at risk for sepsis. Pediatrics. 126: 903-9. PMID 20974782 DOI: 10.1542/peds.2010-0935  0.015
2011 Puopolo KM, Draper D, Wi S, Newman TB, Zupancic J, Lieberman E, Smith M, Escobar GJ. Estimating the probability of neonatal early-onset infection on the basis of maternal risk factors. Pediatrics. 128: e1155-63. PMID 22025590 DOI: 10.1542/peds.2010-3464  0.014
2017 Profit J, Gould JB, Bennett M, Goldstein BA, Draper D, Phibbs CS, Lee HC. Racial/Ethnic Disparity in NICU Quality of Care Delivery. Pediatrics. PMID 28847984 DOI: 10.1542/peds.2017-0918  0.014
2012 Escobar GJ, LaGuardia JC, Turk BJ, Ragins A, Kipnis P, Draper D. Early detection of impending physiologic deterioration among patients who are not in intensive care: development of predictive models using data from an automated electronic medical record. Journal of Hospital Medicine. 7: 388-95. PMID 22447632 DOI: 10.1002/jhm.1929  0.012
2016 Profit J, Gould JB, Bennett M, Goldstein BA, Draper D, Phibbs CS, Lee HC. The Association of Level of Care With NICU Quality. Pediatrics. PMID 26908663 DOI: 10.1542/peds.2014-4210  0.011
2020 Draper D, Mallipudi RM. Therapeutic ultrasound: myths and truths for non-portable in-clinic and portable home use ultrasound. Moj Sports Medicine. 4: 115-116. PMID 33442669  0.01
2018 Profit J, Sharek PJ, Cui X, Nisbet CC, Thomas EJ, Tawfik DS, Lee HC, Draper D, Sexton JB. The Correlation Between Neonatal Intensive Care Unit Safety Culture and Quality of Care. Journal of Patient Safety. PMID 30407963 DOI: 10.1097/PTS.0000000000000546  0.01
2014 Escobar GJ, Puopolo KM, Wi S, Turk BJ, Kuzniewicz MW, Walsh EM, Newman TB, Zupancic J, Lieberman E, Draper D. Stratification of risk of early-onset sepsis in newborns ≥ 34 weeks' gestation. Pediatrics. 133: 30-6. PMID 24366992 DOI: 10.1542/peds.2013-1689  0.01
2013 Escobar GJ, Gardner MN, Greene JD, Draper D, Kipnis P. Risk-adjusting hospital mortality using a comprehensive electronic record in an integrated health care delivery system. Medical Care. 51: 446-53. PMID 23579354 DOI: 10.1097/MLR.0b013e3182881c8e  0.01
2009 Draper DE, Giddins NG, McCort J, Gross GJ. Diagnostic usefulness of graded exercise testing in pediatric supraventricular tachycardia. The Canadian Journal of Cardiology. 25: 407-10. PMID 19584970  0.01
2008 Escobar GJ, Greene JD, Scheirer P, Gardner MN, Draper D, Kipnis P. Risk-adjusting hospital inpatient mortality using automated inpatient, outpatient, and laboratory databases. Medical Care. 46: 232-9. PMID 18388836 DOI: 10.1097/MLR.0b013e3181589bb6  0.01
2005 Zhang N, Hartig H, Dzhagalov I, Draper D, He YW. The role of apoptosis in the development and function of T lymphocytes. Cell Research. 15: 749-69. PMID 16246265 DOI: 10.1038/Sj.Cr.7290345  0.01
1995 Draper D. Rejoinder Journal of Educational and Behavioral Statistics. 20: 228-233. DOI: 10.3102/10769986020002228  0.01
1982 Draper DE. American Indian Music of the Mississippi Choctaws Ethnomusicology. 26: 333. DOI: 10.2307/851539  0.01
1982 Draper DE. Abba isht tuluwa: The Christian Hymns of the Mississippi Choctaw American Indian Culture and Research Journal. 6: 43-61. DOI: 10.17953/AICR.06.1.B2591K87305N2X73  0.01
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