Kyoko Yokomori - Publications

Biomedical Sciences - Ph.D. University of California, Irvine, Irvine, CA 
Biochemistry, Molecular Biology

68 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Chau J, Kong X, Nguyen N, Williams K, Tawil R, Kiyono T, Mortazavi A, Yokomori K. Relationship of DUX4 and target gene expression in FSHD myocytes. Human Mutation. PMID 33502067 DOI: 10.1002/humu.24171  0.36
2020 Jiang S, Williams K, Kong X, Zeng W, Nguyen NV, Ma X, Tawil R, Yokomori K, Mortazavi A. Single-nucleus RNA-seq identifies divergent populations of FSHD2 myotube nuclei. Plos Genetics. 16: e1008754. PMID 32365093 DOI: 10.1371/journal.pgen.1008754  0.84
2020 Gomez Godinez V, Kabbara S, Sherman A, Wu T, Cohen S, Kong X, Maravillas-Montero JL, Shi Z, Preece D, Yokomori K, Berns MW. DNA damage induced during mitosis undergoes DNA repair synthesis. Plos One. 15: e0227849. PMID 32343690 DOI: 10.1371/journal.pone.0227849  0.36
2020 Morris TA, Naik J, Fibben KS, Kong X, Kiyono T, Yokomori K, Grosberg A. Striated myocyte structural integrity: Automated analysis of sarcomeric z-discs. Plos Computational Biology. 16: e1007676. PMID 32130207 DOI: 10.1371/journal.pcbi.1007676  0.36
2019 Murata MM, Kong X, Moncada E, Chen Y, Imamura H, Wang P, Berns MW, Yokomori K, Digman MA. NAD+ consumption by PARP1 in response to DNA damage triggers metabolic shift critical for damaged cell survival. Molecular Biology of the Cell. mbcE18100650. PMID 31390283 DOI: 10.1091/mbc.E18-10-0650  0.36
2018 Kong X, Cruz GMS, Trinh SL, Zhu XD, Berns MW, Yokomori K. Biphasic recruitment of TRF2 to DNA damage sites promotes non-sister chromatid homologous recombination repair. Journal of Cell Science. PMID 30404833 DOI: 10.1242/Jcs.219311  0.36
2018 Kong X, Cruz GMS, Silva BA, Wakida NM, Khatibzadeh N, Berns MW, Yokomori K. Laser Microirradiation to Study In Vivo Cellular Responses to Simple and Complex DNA Damage. Journal of Visualized Experiments : Jove. PMID 29443023 DOI: 10.3791/56213  0.36
2017 Newkirk DA, Chen YY, Chien R, Zeng W, Biesinger J, Flowers E, Kawauchi S, Santos R, Calof AL, Lander AD, Xie X, Yokomori K. The effect of Nipped-B-like (Nipbl) haploinsufficiency on genome-wide cohesin binding and target gene expression: modeling Cornelia de Lange syndrome. Clinical Epigenetics. 9: 89. PMID 28855971 DOI: 10.1186/S13148-017-0391-X  0.84
2017 Kong X, Ball AR, Yokomori K. The Use of Laser Microirradiation to Investigate the Roles of Cohesins in DNA Repair. Methods in Molecular Biology (Clifton, N.J.). 1515: 227-242. PMID 27797083 DOI: 10.1007/978-1-4939-6545-8_14  0.84
2016 Zeng W, Jiang S, Kong X, El-Ali N, Ball AR, Ma CI, Hashimoto N, Yokomori K, Mortazavi A. Single-nucleus RNA-seq of differentiating human myoblasts reveals the extent of fate heterogeneity. Nucleic Acids Research. PMID 27566152 DOI: 10.1093/nar/gkw739  0.84
2015 Saquilabon Cruz GM, Kong X, Silva BA, Khatibzadeh N, Thai R, Berns MW, Yokomori K. Femtosecond near-infrared laser microirradiation reveals a crucial role for PARP signaling on factor assemblies at DNA damage sites. Nucleic Acids Research. PMID 26424850 DOI: 10.1093/Nar/Gkv976  0.36
2015 Kline AD, Calof AL, Lander AD, Gerton JL, Krantz ID, Dorsett D, Deardorff MA, Blagowidow N, Yokomori K, Shirahige K, Santos R, Woodman J, Megee PC, O'Connor JT, Egense A, et al. Clinical, developmental and molecular update on Cornelia de Lange syndrome and the cohesin complex: Abstracts from the 2014 Scientific and Educational Symposium. American Journal of Medical Genetics. Part A. 167: 1179-92. PMID 25899772 DOI: 10.1002/Ajmg.A.37056  0.4
2015 Spitler R, Ho H, Norpetlian F, Kong X, Jiang J, Yokomori K, Andersen B, Boss GR, Berns MW. Combination of low level light therapy and nitrosyl-cobinamide accelerates wound healing. Journal of Biomedical Optics. 20: 051022. PMID 25562608 DOI: 10.1117/1.JBO.20.5.051022  0.36
2014 Tuzon CT, Spektor T, Kong X, Congdon LM, Wu S, Schotta G, Yokomori K, Rice JC. Concerted activities of distinct H4K20 methyltransferases at DNA double-strand breaks regulate 53BP1 nucleation and NHEJ-directed repair. Cell Reports. 8: 430-8. PMID 25001286 DOI: 10.1016/J.Celrep.2014.06.013  0.36
2014 Hinde E, Kong X, Yokomori K, Gratton E. Chromatin dynamics during DNA repair revealed by pair correlation analysis of molecular flow in the nucleus. Biophysical Journal. 107: 55-65. PMID 24988341 DOI: 10.1016/J.Bpj.2014.05.027  0.4
2014 Alcaraz Silva B, Stambaugh JR, Yokomori K, Shah JV, Berns MW. DNA damage to a single chromosome end delays anaphase onset Journal of Biological Chemistry. 289: 22771-22784. PMID 24982423 DOI: 10.1074/Jbc.M113.535955  0.4
2014 Zeng W, Chen YY, Newkirk DA, Wu B, Balog J, Kong X, Ball AR, Zanotti S, Tawil R, Hashimoto N, Mortazavi A, van der Maarel SM, Yokomori K. Genetic and epigenetic characteristics of FSHD-associated 4q and 10q D4Z4 that are distinct from non-4q/10q D4Z4 homologs. Human Mutation. 35: 998-1010. PMID 24838473 DOI: 10.1002/humu.22593  0.4
2014 Kline AD, Calof AL, Schaaf CA, Krantz ID, Jyonouchi S, Yokomori K, Gauze M, Carrico CS, Woodman J, Gerton JL, Vega H, Levin AV, Shirahige K, Champion M, Goodban MT, et al. Cornelia de Lange syndrome: further delineation of phenotype, cohesin biology and educational focus, 5th Biennial Scientific and Educational Symposium abstracts. American Journal of Medical Genetics. Part A. 164: 1384-93. PMID 24504889 DOI: 10.1002/Ajmg.A.36417  0.4
2014 Kong X, Ball AR, Pham HX, Zeng W, Chen HY, Schmiesing JA, Kim JS, Berns M, Yokomori K. Distinct functions of human cohesin-SA1 and cohesin-SA2 in double-strand break repair. Molecular and Cellular Biology. 34: 685-98. PMID 24324008 DOI: 10.1128/MCB.01503-13  0.84
2014 Ball AR, Chen YY, Yokomori K. Mechanisms of cohesin-mediated gene regulation and lessons learned from cohesinopathies. Biochimica Et Biophysica Acta. 1839: 191-202. PMID 24269489 DOI: 10.1016/j.bbagrm.2013.11.002  0.84
2013 Spitler R, Schwappacher R, Wu T, Kong X, Yokomori K, Pilz RB, Boss GR, Berns MW. Nitrosyl-cobinamide (NO-Cbi), a new nitric oxide donor, improves wound healing through cGMP/cGMP-dependent protein kinase. Cellular Signalling. 25: 2374-82. PMID 23920342 DOI: 10.1016/J.Cellsig.2013.07.029  0.4
2012 Wu N, Kong X, Ji Z, Zeng W, Potts PR, Yokomori K, Yu H. Scc1 sumoylation by Mms21 promotes sister chromatid recombination through counteracting Wapl. Genes & Development. 26: 1473-85. PMID 22751501 DOI: 10.1101/gad.193615.112  0.84
2012 Balog J, Thijssen PE, de Greef JC, Shah B, van Engelen BG, Yokomori K, Tapscott SJ, Tawil R, van der Maarel SM. Correlation analysis of clinical parameters with epigenetic modifications in the DUX4 promoter in FSHD. Epigenetics. 7: 579-84. PMID 22522912 DOI: 10.4161/epi.20001  0.4
2011 Newkirk D, Biesinger J, Chon A, Yokomori K, Xie X. AREM: aligning short reads from ChIP-sequencing by expectation maximization. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1495-505. PMID 22035330 DOI: 10.1089/cmb.2011.0185  0.4
2011 Kong X, Stephens J, Ball AR, Heale JT, Newkirk DA, Berns MW, Yokomori K. Condensin I recruitment to base damage-enriched DNA lesions is modulated by PARP1. Plos One. 6: e23548. PMID 21858164 DOI: 10.1371/journal.pone.0023548  0.4
2011 Chien R, Zeng W, Ball AR, Yokomori K. Cohesin: a critical chromatin organizer in mammalian gene regulation. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 89: 445-58. PMID 21851156 DOI: 10.1139/o11-039  0.84
2011 Ball AR, Yokomori K. Damage site chromatin: open or closed? Current Opinion in Cell Biology. 23: 277-83. PMID 21489773 DOI: 10.1016/  0.84
2011 Chien R, Zeng W, Kawauchi S, Bender MA, Santos R, Gregson HC, Schmiesing JA, Newkirk DA, Kong X, Ball AR, Calof AL, Lander AD, Groudine MT, Yokomori K. Cohesin mediates chromatin interactions that regulate mammalian β-globin expression. The Journal of Biological Chemistry. 286: 17870-8. PMID 21454523 DOI: 10.1074/Jbc.M110.207365  0.4
2010 Wu S, Wang W, Kong X, Congdon LM, Yokomori K, Kirschner MW, Rice JC. Dynamic regulation of the PR-Set7 histone methyltransferase is required for normal cell cycle progression. Genes & Development. 24: 2531-42. PMID 20966048 DOI: 10.1101/Gad.1984210  0.4
2010 Gomez-Godinez V, Wu T, Sherman AJ, Lee CS, Liaw LH, Zhongsheng Y, Yokomori K, Berns MW. Analysis of DNA double-strand break response and chromatin structure in mitosis using laser microirradiation. Nucleic Acids Research. 38: e202. PMID 20923785 DOI: 10.1093/nar/gkq836  0.36
2010 Zeng W, Ball AR, Yokomori K. HP1: heterochromatin binding proteins working the genome. Epigenetics. 5: 287-92. PMID 20421743  0.84
2009 Stephens J, Mohanty SK, Genc S, Kong X, Yokomori K, Berns MW. Spatially sculpted laser scissors for study of DNA damage and repair. Journal of Biomedical Optics. 14: 054004. PMID 19895106 DOI: 10.1117/1.3213601  0.36
2009 Kawauchi S, Calof AL, Santos R, Lopez-Burks ME, Young CM, Hoang MP, Chua A, Lao T, Lechner MS, Daniel JA, Nussenzweig A, Kitzes L, Yokomori K, Hallgrimsson B, Lander AD. Multiple organ system defects and transcriptional dysregulation in the Nipbl(+/-) mouse, a model of Cornelia de Lange Syndrome. Plos Genetics. 5: e1000650. PMID 19763162 DOI: 10.1371/Journal.Pgen.1000650  0.4
2009 Zeng W, de Greef JC, Chen YY, Chien R, Kong X, Gregson HC, Winokur ST, Pyle A, Robertson KD, Schmiesing JA, Kimonis VE, Balog J, Frants RR, Ball AR, Lock LF, ... ... Yokomori K, et al. Specific loss of histone H3 lysine 9 trimethylation and HP1gamma/cohesin binding at D4Z4 repeats is associated with facioscapulohumeral dystrophy (FSHD). Plos Genetics. 5: e1000559. PMID 19593370 DOI: 10.1371/Journal.Pgen.1000559  0.84
2009 Ball AR, Yokomori K. Revisiting the role of heterochromatin protein 1 in DNA repair. The Journal of Cell Biology. 185: 573-5. PMID 19451270 DOI: 10.1083/jcb.200904033  0.84
2009 Kong X, Mohanty SK, Stephens J, Heale JT, Gomez-Godinez V, Shi LZ, Kim JS, Yokomori K, Berns MW. Comparative analysis of different laser systems to study cellular responses to DNA damage in mammalian cells. Nucleic Acids Research. 37: e68. PMID 19357094 DOI: 10.1093/nar/gkp221  0.36
2009 Kong X, Ball AR, Sonoda E, Feng J, Takeda S, Fukagawa T, Yen TJ, Yokomori K. Cohesin associates with spindle poles in a mitosis-specific manner and functions in spindle assembly in vertebrate cells. Molecular Biology of the Cell. 20: 1289-301. PMID 19116315 DOI: 10.1091/mbc.E08-04-0419  0.84
2008 Parelho V, Hadjur S, Spivakov M, Leleu M, Sauer S, Gregson HC, Jarmuz A, Canzonetta C, Webster Z, Nesterova T, Cobb BS, Yokomori K, Dillon N, Aragon L, Fisher AG, et al. Cohesins functionally associate with CTCF on mammalian chromosome arms. Cell. 132: 422-33. PMID 18237772 DOI: 10.1016/j.cell.2008.01.011  0.4
2008 Ball AR, Yokomori K. Damage-induced reactivation of cohesin in postreplicative DNA repair. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 30: 5-9. PMID 18081005 DOI: 10.1002/bies.20691  0.84
2007 Murakawa Y, Sonoda E, Barber LJ, Zeng W, Yokomori K, Kimura H, Niimi A, Lehmann A, Zhao GY, Hochegger H, Boulton SJ, Takeda S. Inhibitors of the proteasome suppress homologous DNA recombination in mammalian cells. Cancer Research. 67: 8536-43. PMID 17875693 DOI: 10.1158/0008-5472.Can-07-1166  0.84
2007 Viera A, Gómez R, Parra MT, Schmiesing JA, Yokomori K, Rufas JS, Suja JA. Condensin I reveals new insights on mouse meiotic chromosome structure and dynamics. Plos One. 2: e783. PMID 17712430 DOI: 10.1371/journal.pone.0000783  0.4
2007 Kim JS, Heale JT, Zeng W, Kong X, Krasieva TB, Ball AR, Yokomori K. In situ analysis of DNA damage response and repair using laser microirradiation. Methods in Cell Biology. 82: 377-407. PMID 17586265 DOI: 10.1016/S0091-679X(06)82013-3  0.84
2007 Hou F, Chu CW, Kong X, Yokomori K, Zou H. The acetyltransferase activity of San stabilizes the mitotic cohesin at the centromeres in a shugoshin-independent manner. The Journal of Cell Biology. 177: 587-97. PMID 17502424 DOI: 10.1083/jcb.200701043  0.36
2007 Gomez-Godinez V, Wakida NM, Dvornikov AS, Yokomori K, Berns MW. Recruitment of DNA damage recognition and repair pathway proteins following near-IR femtosecond laser irradiation of cells. Journal of Biomedical Optics. 12: 020505. PMID 17477704 DOI: 10.1117/1.2717684  0.36
2007 Saberi A, Hochegger H, Szuts D, Lan L, Yasui A, Sale JE, Taniguchi Y, Murakawa Y, Zeng W, Yokomori K, Helleday T, Teraoka H, Arakawa H, Buerstedde JM, Takeda S. RAD18 and poly(ADP-ribose) polymerase independently suppress the access of nonhomologous end joining to double-strand breaks and facilitate homologous recombination-mediated repair. Molecular and Cellular Biology. 27: 2562-71. PMID 17242200 DOI: 10.1128/MCB.01243-06  0.84
2006 Heale JT, Ball AR, Schmiesing JA, Kim JS, Kong X, Zhou S, Hudson DF, Earnshaw WC, Yokomori K. Condensin I interacts with the PARP-1-XRCC1 complex and functions in DNA single-strand break repair. Molecular Cell. 21: 837-48. PMID 16543152 DOI: 10.1016/J.Molcel.2006.01.036  0.4
2005 Kim JS, Krasieva TB, Kurumizaka H, Chen DJ, Taylor AM, Yokomori K. Independent and sequential recruitment of NHEJ and HR factors to DNA damage sites in mammalian cells. The Journal of Cell Biology. 170: 341-7. PMID 16061690 DOI: 10.1083/jcb.200411083  0.36
2004 Geiman TM, Sankpal UT, Robertson AK, Chen Y, Mazumdar M, Heale JT, Schmiesing JA, Kim W, Yokomori K, Zhao Y, Robertson KD. Isolation and characterization of a novel DNA methyltransferase complex linking DNMT3B with components of the mitotic chromosome condensation machinery. Nucleic Acids Research. 32: 2716-29. PMID 15148359 DOI: 10.1093/nar/gkh589  0.52
2003 Bermudez VP, Maniwa Y, Tappin I, Ozato K, Yokomori K, Hurwitz J. The alternative Ctf18-Dcc1-Ctf8-replication factor C complex required for sister chromatid cohesion loads proliferating cell nuclear antigen onto DNA. Proceedings of the National Academy of Sciences of the United States of America. 100: 10237-42. PMID 12930902 DOI: 10.1073/Pnas.1434308100  0.4
2002 James RD, Schmiesing JA, Peters AH, Yokomori K, Disteche CM. Differential association of SMC1alpha and SMC3 proteins with meiotic chromosomes in wild-type and SPO11-deficient male mice. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 10: 549-60. PMID 12498344  0.52
2002 Kim JS, Krasieva TB, LaMorte V, Taylor AM, Yokomori K. Specific recruitment of human cohesin to laser-induced DNA damage. The Journal of Biological Chemistry. 277: 45149-53. PMID 12228239 DOI: 10.1074/jbc.M209123200  0.36
2002 Gregson HC, Van Hooser AA, Ball AR, Brinkley BR, Yokomori K. Localization of human SMC1 protein at kinetochores. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 10: 267-77. PMID 12199140  0.84
2002 Hakimi MA, Bochar DA, Schmiesing JA, Dong Y, Barak OG, Speicher DW, Yokomori K, Shiekhattar R. A chromatin remodelling complex that loads cohesin onto human chromosomes. Nature. 418: 994-8. PMID 12198550 DOI: 10.1038/Nature01024  0.4
2002 Ball AR, Schmiesing JA, Zhou C, Gregson HC, Okada Y, Doi T, Yokomori K. Identification of a chromosome-targeting domain in the human condensin subunit CNAP1/hCAP-D2/Eg7. Molecular and Cellular Biology. 22: 5769-81. PMID 12138188 DOI: 10.1128/Mcb.22.16.5769-5781.2002  0.84
2001 Van Hooser AA, Ouspenski II, Gregson HC, Starr DA, Yen TJ, Goldberg ML, Yokomori K, Earnshaw WC, Sullivan KF, Brinkley BR. Specification of kinetochore-forming chromatin by the histone H3 variant CENP-A. Journal of Cell Science. 114: 3529-42. PMID 11682612  0.4
2001 Gregson HC, Schmiesing JA, Kim JS, Kobayashi T, Zhou S, Yokomori K. A potential role for human cohesin in mitotic spindle aster assembly. The Journal of Biological Chemistry. 276: 47575-82. PMID 11590136 DOI: 10.1074/jbc.M103364200  0.52
2000 Schmiesing JA, Gregson HC, Zhou S, Yokomori K. A human condensin complex containing hCAP-C-hCAP-E and CNAP1, a homolog of Xenopus XCAP-D2, colocalizes with phosphorylated histone H3 during the early stage of mitotic chromosome condensation. Molecular and Cellular Biology. 20: 6996-7006. PMID 10958694  0.52
1998 Schmiesing JA, Ball AR, Gregson HC, Alderton JM, Zhou S, Yokomori K. Identification of two distinct human SMC protein complexes involved in mitotic chromosome dynamics. Proceedings of the National Academy of Sciences of the United States of America. 95: 12906-11. PMID 9789013  0.84
1998 Yokomori K, Verrijzer CP, Tjian R. An interplay between TATA box-binding protein and transcription factors IIE and IIA modulates DNA binding and transcription. Proceedings of the National Academy of Sciences of the United States of America. 95: 6722-7. PMID 9618479 DOI: 10.1073/Pnas.95.12.6722  0.4
1996 Zeidler MP, Yokomori K, Tjian R, Mlodzik M. Drosophila TFIIA-S is up-regulated and required during Ras-mediated photoreceptor determination. Genes & Development. 10: 50-9. PMID 8557194 DOI: 10.1101/Gad.10.1.50  0.4
1995 Verrijzer CP, Chen JL, Yokomori K, Tjian R. Binding of TAFs to core elements directs promoter selectivity by RNA polymerase II. Cell. 81: 1115-25. PMID 7600579 DOI: 10.1016/S0092-8674(05)80016-9  0.4
1994 Verrijzer CP, Yokomori K, Chen JL, Tjian R. Drosophila TAFII 150: Similarity to yeast gene TSM-1 and specific binding to core promoter DNA Science. 264: 933-941. PMID 8178153 DOI: 10.1126/Science.8178153  0.4
1994 Yokomori K, Zeidler MP, Chen JL, Verrijzer CP, Mlodzik M, Tjian R. Drosophila TFIIA directs cooperative DNA binding with TBP and mediates transcriptional activation. Genes & Development. 8: 2313-23. PMID 7958898 DOI: 10.1101/Gad.8.19.2313  0.4
1994 Chen JL, Attardi LD, Verrijzer CP, Yokomori K, Tjian R. Assembly of recombinant TFIID reveals differential coactivator requirements for distinct transcriptional activators Cell. 79: 93-105. PMID 7923382 DOI: 10.1016/0092-8674(94)90403-0  0.4
1993 Baker SC, Yokomori K, Dong S, Carlisle R, Gorbalenya AE, Koonin EV, Lai MMC. Identification of the catalytic sites of a papain-like cysteine proteinase of murine coronavirus Journal of Virology. 67: 6056-6063. PMID 8396668 DOI: 10.1128/Jvi.67.10.6056-6063.1993  0.4
1993 Yokomori K, Chen JL, Admon A, Zhou S, Tjian R. Molecular cloning and characterization of dTAFII30α and dTAFII30β: Two small subunits of Drosophila TFIID Genes and Development. 7: 2587-2597. PMID 8276241 DOI: 10.1101/Gad.7.12B.2587  0.4
1993 Yokomori K, Admon A, Goodrich JA, Chen JL, Tjian R. Drosophila TFIIA-L is processed into two subunits that are associated with the TBP/TAF complex Genes and Development. 7: 2235-2245. PMID 8224849 DOI: 10.1101/Gad.7.11.2235  0.4
1992 Yokomori K, Baker SC, Stohlman SA, Lai MMC. Hemagglutinin-Esterase-specific monoclonal antibodies alter the neuropathogenicity of mouse hepatitis virus Journal of Virology. 66: 2865-2874. PMID 1560531 DOI: 10.1128/Jvi.66.5.2865-2874.1992  0.4
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