Daniel Summerer - Publications

Affiliations: 
Technical University Dortmund, Dortmund, Nordrhein-Westfalen, Germany 
Area:
Chemical Biology

70 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Kanne J, Hussong M, Isensee J, Muñoz-López Á, Wolffgramm J, Heß F, Grimm C, Bessonov S, Meder L, Wang J, Reinhardt HC, Odenthal M, Hucho T, Büttner R, Summerer D, et al. Pericentromeric Satellite III transcripts induce etoposide resistance. Cell Death & Disease. 12: 530. PMID 34031359 DOI: 10.1038/s41419-021-03810-9  0.52
2021 Wolffgramm J, Buchmuller B, Palei S, Munoz-Lopez A, Kanne J, Janning P, Schweiger M, Summerer D. Light-Activation of DNA-Methyltransferases. Angewandte Chemie (International Ed. in English). PMID 33826797 DOI: 10.1002/anie.202103945  0.52
2021 Buchmuller B, Jung A, Muñoz-López Á, Summerer D. Programmable tools for targeted analysis of epigenetic DNA modifications. Current Opinion in Chemical Biology. 63: 1-10. PMID 33588304 DOI: 10.1016/j.cbpa.2021.01.002  0.52
2021 Braun T, Drescher M, Summerer D. Correction: Braun, T., et al. Expanding the Genetic Code for Site-Directed Spin-Labeling. 2019, , 373. International Journal of Molecular Sciences. 22. PMID 33557445 DOI: 10.3390/ijms22041574  0.44
2021 Buchmuller B, Muñoz-López Á, Gieß M, Summerer D. Design and Application of DNA Modification-Specific Transcription-Activator-Like Effectors. Methods in Molecular Biology (Clifton, N.J.). 2198: 381-399. PMID 32822046 DOI: 10.1007/978-1-0716-0876-0_29  0.52
2020 Witte A, Muñoz-López Á, Metz M, Schweiger MR, Janning P, Summerer D. Encoded, click-reactive DNA-binding domains for programmable capture of specific chromatin segments. Chemical Science. 11: 12506-12511. PMID 34123231 DOI: 10.1039/d0sc02707c  0.52
2020 Munoz-Lopez A, Jung A, Buchmuller B, Wolffgramm J, Maurer S, Witte A, Summerer D. Engineered TALE Repeats for Enhanced Imaging-based Analysis of Cellular 5-Methylcytosine. Chembiochem : a European Journal of Chemical Biology. PMID 32991020 DOI: 10.1002/cbic.202000563  0.52
2020 Palei S, Buchmuller B, Wolffgramm J, Muñoz-Lopez Á, Jung S, Czodrowski P, Summerer D. Light-Activatable TET-Dioxygenases Reveal Dynamics of 5-Methylcytosine Oxidation and Transcriptome Reorganization. Journal of the American Chemical Society. PMID 32286069 DOI: 10.1021/Jacs.0C01193  0.52
2020 Munoz-Lopez A, Buchmuller B, Wolffgramm J, Jung A, Hussong M, Kanne J, Schweiger MR, Summerer D. Designer Receptors for Nucleotide Resolution Analysis of Genomic 5-Methylcytosine by Cellular Imaging. Angewandte Chemie (International Ed. in English). PMID 32167219 DOI: 10.1002/Anie.202001935  0.52
2020 Widder P, Schuck J, Summerer D, Drescher M. Combining site-directed spin labeling in vivo and in-cell EPR distance determination. Physical Chemistry Chemical Physics : Pccp. 22: 4875-4879. PMID 32072999 DOI: 10.1039/C9Cp05584C  0.44
2019 Braun TS, Widder P, Osswald U, Groß L, Williams L, Schmidt M, Helmle I, Summerer D, Drescher M. Isoindoline-Based Nitroxides as Bioresistant Spin Labels for Protein Labeling via Cysteines and Alkyne Bearing Noncanonical Amino Acids. Chembiochem : a European Journal of Chemical Biology. PMID 31657498 DOI: 10.1002/Cbic.201900537  0.44
2019 Gieß M, Muñoz-López Á, Buchmuller B, Kubik G, Summerer D. Programmable Protein-DNA Cross-Linking for the Direct Capture and Quantification of 5-Formylcytosine. Journal of the American Chemical Society. PMID 31180648 DOI: 10.1021/Jacs.9B01432  1
2019 Widder P, Berner F, Summerer D, Drescher M. Double Nitroxide Labeling by Copper-Catalyzed Azide-Alkyne Cycloadditions with Noncanonical Amino Acids for Electron Paramagnetic Resonance Spectroscopy. Acs Chemical Biology. PMID 30998314 DOI: 10.1021/Acschembio.8B01111  0.44
2019 Kugele A, Braun TS, Widder P, Williams L, Schmidt MJ, Summerer D, Drescher M. Site-directed spin labelling of proteins by Suzuki-Miyaura coupling via a genetically encoded aryliodide amino acid. Chemical Communications (Cambridge, England). PMID 30680379 DOI: 10.1039/C8Cc09325C  1
2019 Braun T, Drescher M, Summerer D. Expanding the Genetic Code for Site-Directed Spin-Labeling. International Journal of Molecular Sciences. 20. PMID 30654584 DOI: 10.3390/Ijms20020373  0.44
2018 Maurer S, Buchmuller B, Ehrt C, Jasper J, Koch O, Summerer D. Overcoming conservation in TALE-DNA interactions: a minimal repeat scaffold enables selective recognition of an oxidized 5-methylcytosine. Chemical Science. 9: 7247-7252. PMID 30288245 DOI: 10.1039/C8Sc01958D  0.52
2018 Rathi P, Maurer S, Summerer D. Selective recognition of 4-methylcytosine in DNA by engineered transcription-activator-like effectors. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 373. PMID 29685980 DOI: 10.1098/Rstb.2017.0078  0.36
2018 Gieß M, Witte A, Jasper J, Koch O, Summerer D. Complete, Programmable Decoding of Oxidized 5-Methylcytosine Nucleobases in DNA by Chemoselective Blockage of Universal Transcription-Activator-Like Effector Repeats. Journal of the American Chemical Society. PMID 29677450 DOI: 10.1021/Jacs.8B02909  0.52
2018 Schmidt MJ, Summerer D. Directed Evolution of Orthogonal Pyrrolysyl-tRNA Synthetases in Escherichia coli for the Genetic Encoding of Noncanonical Amino Acids. Methods in Molecular Biology (Clifton, N.J.). 1728: 97-111. PMID 29404992 DOI: 10.1007/978-1-4939-7574-7_5  1
2017 Muñoz-López Á, Summerer D. Recognition of Oxidized 5-Methylcytosine Derivatives in DNA by Natural and Engineered Protein Scaffolds. Chemical Record (New York, N.Y.). PMID 29251421 DOI: 10.1002/Tcr.201700088  0.52
2017 Rathi P, Witte A, Summerer D. Engineering DNA Backbone Interactions Results in TALE Scaffolds with Enhanced 5-Methylcytosine Selectivity. Scientific Reports. 7: 15067. PMID 29118409 DOI: 10.1038/S41598-017-15361-1  0.36
2017 Flade S, Jasper J, Giess M, Juhasz M, Dankers A, Kubik G, Koch O, Weinhold E, Summerer D. The N6-Position of Adenine is a Blind Spot for TAL-Effectors that Enables Effective Binding of Methylated and Fluorophore-Labeled DNA. Acs Chemical Biology. PMID 28493677 DOI: 10.1021/Acschembio.7B00324  1
2016 Maurer S, Giess M, Koch O, Summerer D. Interrogating Key Positions of Size-Reduced TALE Repeats Reveals a Programmable Sensor of 5-Carboxylcytosine. Acs Chemical Biology. 11: 3294-3299. PMID 27978710 DOI: 10.1021/Acschembio.6B00627  0.52
2016 Lee YJ, Schmidt MJ, Tharp JM, Weber A, Koenig AL, Zheng H, Gao J, Waters ML, Summerer D, Liu WR. Genetically encoded fluorophenylalanines enable insights into the recognition of lysine trimethylation by an epigenetic reader. Chemical Communications (Cambridge, England). PMID 27711380 DOI: 10.1039/C6Cc05959G  1
2016 Rathi P, Maurer S, Kubik G, Summerer D. Isolation of Human Genomic DNA Sequences with Expanded Nucleobase Selectivity. Journal of the American Chemical Society. PMID 27429302 DOI: 10.1021/Jacs.6B04807  1
2016 Roser P, Schmidt MJ, Drescher M, Summerer D. Site-directed spin labeling of proteins for distance measurements in vitro and in cells. Organic & Biomolecular Chemistry. PMID 27181459 DOI: 10.1039/C6Ob00473C  1
2016 Kubik G, Summerer D. TALEored Epigenetics: A DNA-Binding Scaffold for Programmable Epigenome Editing and Analysis. Chembiochem : a European Journal of Chemical Biology. 17: 975-80. PMID 26972580 DOI: 10.1002/Cbic.201600072  1
2015 Schmidt MJ, Fedoseev A, Summerer D, Drescher M. Genetically Encoded Spin Labels for In Vitro and In-Cell EPR Studies of Native Proteins. Methods in Enzymology. 563: 483-502. PMID 26478496 DOI: 10.1016/Bs.Mie.2015.05.023  1
2015 Schmidt MJ, Fedoseev A, Bücker D, Borbas J, Peter C, Drescher M, Summerer D. EPR Distance Measurements in Native Proteins with Genetically Encoded Spin Labels. Acs Chemical Biology. PMID 26421438 DOI: 10.1021/Acschembio.5B00512  1
2015 Kubik G, Summerer D. Deciphering Epigenetic Cytosine Modifications by Direct Molecular Recognition. Acs Chemical Biology. 10: 1580-9. PMID 25897631 DOI: 10.1021/Acschembio.5B00158  1
2015 Klauser B, Rehm C, Summerer D, Hartig JS. Engineering of ribozyme-based aminoglycoside switches of gene expression by in vivo genetic selection in Saccharomyces cerevisiae. Methods in Enzymology. 550: 301-20. PMID 25605392 DOI: 10.1016/Bs.Mie.2014.10.037  1
2015 Kubik G, Batke S, Summerer D. Programmable sensors of 5-hydroxymethylcytosine. Journal of the American Chemical Society. 137: 2-5. PMID 25562518 DOI: 10.1021/Ja506022T  1
2015 Kubik G, Summerer D. Achieving single-nucleotide resolution of 5-methylcytosine detection with TALEs. Chembiochem : a European Journal of Chemical Biology. 16: 228-31. PMID 25522353 DOI: 10.1002/Cbic.201402408  1
2014 Pott M, Schmidt MJ, Summerer D. Evolved sequence contexts for highly efficient amber suppression with noncanonical amino acids. Acs Chemical Biology. 9: 2815-22. PMID 25299570 DOI: 10.1021/Cb5006273  1
2014 Kubik G, Schmidt MJ, Penner JE, Summerer D. Programmable and highly resolved in vitro detection of 5-methylcytosine by TALEs. Angewandte Chemie (International Ed. in English). 53: 6002-6. PMID 24801054 DOI: 10.1002/Anie.201400436  1
2014 Schmidt MJ, Summerer D. Genetic code expansion as a tool to study regulatory processes of transcription. Frontiers in Chemistry. 2: 7. PMID 24790976 DOI: 10.3389/Fchem.2014.00007  1
2014 Schmidt MJ, Weber A, Pott M, Welte W, Summerer D. Structural basis of furan-amino acid recognition by a polyspecific aminoacyl-tRNA-synthetase and its genetic encoding in human cells. Chembiochem : a European Journal of Chemical Biology. 15: 1755-60. PMID 24737732 DOI: 10.1002/Cbic.201402006  1
2014 Schmidt MJ, Borbas J, Drescher M, Summerer D. A genetically encoded spin label for electron paramagnetic resonance distance measurements. Journal of the American Chemical Society. 136: 1238-41. PMID 24428347 DOI: 10.1021/Ja411535Q  1
2013 Schmidt MJ, Summerer D. Red-light-controlled protein-RNA crosslinking with a genetically encoded furan. Angewandte Chemie (International Ed. in English). 52: 4690-3. PMID 23512703 DOI: 10.1002/Anie.201300754  1
2013 Schmidt MJ, Summerer D. Durch rotes Licht kontrollierte Protein-RNA-Vernetzung mit einem genetisch kodierten Furan† Angewandte Chemie. 125: 4788-4791. DOI: 10.1002/Ange.201300754  1
2012 Schmidt MJ, Summerer D. A need for speed: genetic encoding of rapid cycloaddition chemistries for protein labelling in living cells. Chembiochem : a European Journal of Chemical Biology. 13: 1553-7. PMID 22753121 DOI: 10.1002/Cbic.201200321  1
2010 Summerer D, Hevroni D, Jain A, Oldenburger O, Parker J, Caruso A, Stähler CF, Stähler PF, Beier M. A flexible and fully integrated system for amplification, detection and genotyping of genomic DNA targets based on microfluidic oligonucleotide arrays New Biotechnology. 27: 149-155. PMID 20359559 DOI: 10.1016/J.Nbt.2010.03.005  1
2010 Summerer D, Schracke N, Wu H, Cheng Y, Bau S, Stähler CF, Stähler PF, Beier M. Targeted high throughput sequencing of a cancer-related exome subset by specific sequence capture with a fully automated microarray platform Genomics. 95: 241-246. PMID 20138981 DOI: 10.1016/J.Ygeno.2010.01.006  1
2010 Jones DH, Cellitti SE, Hao X, Zhang Q, Jahnz M, Summerer D, Schultz PG, Uno T, Geierstanger BH. Site-specific labeling of proteins with NMR-active unnatural amino acids. Journal of Biomolecular Nmr. 46: 89-100. PMID 19669620 DOI: 10.1007/S10858-009-9365-4  1
2009 Schracke N, Kornmeyer T, Kränzle M, Stähler PF, Summerer D, Beier M. Specific sequence selection and next generation resequencing of 68 E. coli genes using HybSelect™ New Biotechnology. 26: 229-233. PMID 19735750 DOI: 10.1016/J.Nbt.2009.08.013  1
2009 Summerer D, Wu H, Haase B, Cheng Y, Schracke N, Stähler CF, Chee MS, Stähler PF, Beier M. Microarray-based multicycle-enrichment of genomic subsets for targeted next-generation sequencing Genome Research. 19: 1616-1621. PMID 19638418 DOI: 10.1101/Gr.091942.109  1
2009 Bau S, Schracke N, Kränzle M, Wu H, Stähler PF, Hoheisel JD, Beier M, Summerer D. Targeted next-generation sequencing by specific capture of multiple genomic loci using low-volume microfluidic DNA arrays Analytical and Bioanalytical Chemistry. 393: 171-175. PMID 18958448 DOI: 10.1007/S00216-008-2460-7  1
2007 Marx A, Summerer D, Sauter KB, Gloeckner C, Rudinger NZ. Chemical biology of DNA polymerases: from selectivity to new functions. Nucleic Acids Symposium Series (2004). 81-2. PMID 18029596 DOI: 10.1093/nass/nrm041  1
2007 Tippmann EM, Liu W, Summerer D, Mack AV, Schultz PG. A genetically encoded diazirine photocrosslinker in Escherichia coli. Chembiochem : a European Journal of Chemical Biology. 8: 2210-4. PMID 18000916 DOI: 10.1002/Cbic.200700460  1
2007 Lemke EA, Summerer D, Geierstanger BH, Brittain SM, Schultz PG. Control of protein phosphorylation with a genetically encoded photocaged amino acid Nature Chemical Biology. 3: 769-772. PMID 17965709 DOI: 10.1038/Nchembio.2007.44  1
2006 Summerer D, Chen S, Wu N, Deiters A, Chin JW, Schultz PG. A genetically encoded fluorescent amino acid. Proceedings of the National Academy of Sciences of the United States of America. 103: 9785-9. PMID 16785423 DOI: 10.1073/Pnas.0603965103  1
2006 Tsao ML, Summerer D, Ryu Y, Schultz PG. The genetic incorporation of a distance probe into proteins in Escherichia coli. Journal of the American Chemical Society. 128: 4572-3. PMID 16594684 DOI: 10.1021/Ja058262U  1
2005 Summerer D, Rudinger NZ, Detmer I, Marx A. Enhanced fidelity in mismatch extension by DNA polymerase through directed combinatorial enzyme design. Angewandte Chemie (International Ed. in English). 44: 4712-5. PMID 15995989 DOI: 10.1002/Anie.200500047  1
2005 Summerer D, Marx A. 4'C-ethynyl-thymidine acts as a chain terminator during DNA-synthesis catalyzed by HIV-1 reverse transcriptase. Bioorganic & Medicinal Chemistry Letters. 15: 869-71. PMID 15686877 DOI: 10.1016/J.Bmcl.2004.12.072  1
2005 Summerer D, Rudinger NZ, Detmer I, Marx A. Verbesserte Selektivität der Fehlpaarungsverlängerung von DNA-Polymerasen durch gerichtetes kombinatorisches Enzymdesign† Angewandte Chemie. 117: 4791-4794. DOI: 10.1002/Ange.200500047  1
2004 Deiters A, Cropp TA, Summerer D, Mukherji M, Schultz PG. Site-specific PEGylation of proteins containing unnatural amino acids. Bioorganic & Medicinal Chemistry Letters. 14: 5743-5. PMID 15501033 DOI: 10.1016/J.Bmcl.2004.09.059  1
2004 Marx A, Summerer D. Bigger DNA: new double helix with expanded size. Angewandte Chemie (International Ed. in English). 43: 1625-6. PMID 15038027 DOI: 10.1002/Anie.200301737  1
2004 Strerath M, Gaster J, Summerer D, Marx A. Increased single-nucleotide discrimination of PCR by primer probes bearing hydrophobic 4'C modifications. Chembiochem : a European Journal of Chemical Biology. 5: 333-9. PMID 14997525 DOI: 10.1002/Cbic.200300757  1
2004 Marx A, Summerer D. Eine DNA-Doppelhelix mit größerem Durchmesser† Angewandte Chemie. 116: 1653-1654. DOI: 10.1002/Ange.200301737  1
2003 Tews B, Wilhelm J, Summerer D, Strerath M, Marx A, Friedhoff P, Pingoud A, Hahn M. Application of the C4'-alkylated deoxyribose primer system (CAPS) in allele-specific real-time PCR for increased selectivity in discrimination of single nucleotide sequence variants. Biological Chemistry. 384: 1533-41. PMID 14669997 DOI: 10.1515/Bc.2003.170  1
2002 Summerer D, Marx A. DNA-templated synthesis: more versatile than expected. Angewandte Chemie (International Ed. in English). 41: 89-90. PMID 12491447 DOI: 10.1002/1521-3773(20020104)41:1<89::Aid-Anie89>3.0.Co;2-G  1
2002 Detmer I, Summerer D, Marx A. DNA minor groove hydration probed with 4'-alkylated thymidines. Chemical Communications (Cambridge, England). 2314-5. PMID 12430418 DOI: 10.1039/B207582M  1
2002 Summerer D, Marx A. A molecular beacon for quantitative monitoring of the DNA polymerase reaction in real-time. Angewandte Chemie (International Ed. in English). 41: 3620-2, 3516. PMID 12370909 DOI: 10.1002/1521-3773(20021004)41:19<3620::Aid-Anie3620>3.0.Co;2-C  1
2002 Strerath M, Summerer D, Marx A. Varied DNA polymerase-substrate interactions in the nucleotide binding pocket. Chembiochem : a European Journal of Chemical Biology. 3: 578-80. PMID 12325016 DOI: 10.1002/1439-7633(20020603)3:6<578::Aid-Cbic578>3.0.Co;2-W  1
2002 Marx A, Summerer D. Molecular insights into error-prone DNA replication and error-free lesion bypass. Chembiochem : a European Journal of Chemical Biology. 3: 405-7. PMID 12007173 DOI: 10.1002/1439-7633(20020503)3:5<405::Aid-Cbic405>3.0.Co;2-4  1
2002 Summerer D, Marx A. Differential minor groove interactions between DNA polymerase and sugar backbone of primer and template strands. Journal of the American Chemical Society. 124: 910-1. PMID 11829591 DOI: 10.1021/Ja017244J  1
2002 Summerer D, Marx A. Eine Fluoreszenzsonde zur quantitativen Detektion der DNA-Polymerase-Reaktion in Echtzeit† Angewandte Chemie. 114: 3778-3780. DOI: 10.1002/1521-3757(20021004)114:19<3778::Aid-Ange3778>3.0.Co;2-3  1
2002 Summerer D, Marx A. Synthesesteuerung mit DNA‐Templaten: vielseitiger als erwartet Angewandte Chemie. 114: 93-95. DOI: 10.1002/1521-3757(20020104)114:1<93::Aid-Ange93>3.0.Co;2-S  1
2001 Summerer D, Marx A. DNA Polymerase Selectivity: Sugar Interactions Monitored with High-Fidelity Nucleotides This work was supported by a grant from the Deutsche Forschungsgemeinschaft. We thank Professor Dr. Michael Famulok for his continuing support. Angewandte Chemie (International Ed. in English). 40: 3693-3695. PMID 11592225 DOI: 10.1002/1521-3773(20011001)40:19<3693::Aid-Anie3693>3.0.Co;2-O  1
2001 Summerer D, Marx A. Selektivität von DNA‐Polymerasen: hochselektive Nucleotide zur Untersuchung von Wechselwirkungen mit dem Zucker Angewandte Chemie. 113: 3806-3808. DOI: 10.1002/1521-3757(20011001)113:19<3806::Aid-Ange3806>3.0.Co;2-1  1
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