Nitin S. Baliga - Publications

Institute of Systems Biology 

82 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Srinivas V, Arrieta-Ortiz ML, Kaur A, Peterson EJR, Baliga NS. PerSort Facilitates Characterization and Elimination of Persister Subpopulation in Mycobacteria. Msystems. 5. PMID 33262242 DOI: 10.1128/mSystems.01127-20  0.52
2020 Vega-Dominguez P, Peterson E, Pan M, Di Maio A, Singh S, Umapathy S, Saini DK, Baliga N, Bhatt A. Biofilms of the non-tuberculous form an extracellular matrix and display distinct expression patterns. Cell Surface (Amsterdam, Netherlands). 6: 100043. PMID 32803022 DOI: 10.1016/j.tcsw.2020.100043  0.52
2020 López García de Lomana A, Kusebauch U, Raman AV, Pan M, Turkarslan S, Lorenzetti APR, Moritz RL, Baliga NS. Selective Translation of Low Abundance and Upregulated Transcripts in Halobacterium salinarum. Msystems. 5. PMID 32723790 DOI: 10.1128/mSystems.00329-20  0.52
2020 Arrieta-Ortiz ML, Hafemeister C, Shuster B, Baliga NS, Bonneau R, Eichenberger P. Inference of Bacterial Small RNA Regulatory Networks and Integration with Transcription Factor-Driven Regulatory Networks. Msystems. 5. PMID 32487739 DOI: 10.1128/mSystems.00057-20  0.48
2020 Peterson EJR, Abidi AA, Arrieta-Ortiz ML, Aguilar B, Yurkovich JT, Kaur A, Pan M, Srinivas V, Shmulevich I, Baliga NS. Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis. Cell Reports. 31: 107577. PMID 32348771 DOI: 10.1016/j.celrep.2020.107577  0.52
2019 Peterson EJ, Bailo R, Rothchild AC, Arrieta-Ortiz ML, Kaur A, Pan M, Mai D, Abidi AA, Cooper C, Aderem A, Bhatt A, Baliga NS. Path-seq identifies an essential mycolate remodeling program for mycobacterial host adaptation. Molecular Systems Biology. 15: e8584. PMID 30833303 DOI: 10.15252/msb.20188584  0.52
2017 López García de Lomana A, Kaur A, Turkarslan S, Beer KD, Mast FD, Smith JJ, Aitchison JD, Baliga NS. Adaptive Prediction Emerges Over Short Evolutionary Time Scales. Genome Biology and Evolution. 9: 1616-1623. PMID 28854640 DOI: 10.1093/gbe/evx116  0.52
2017 Turkarslan S, Raman AV, Thompson AW, Arens CE, Gillespie MA, von Netzer F, Hillesland KL, Stolyar S, López García de Lomana A, Reiss DJ, Gorman-Lewis D, Zane GM, Ranish JA, Wall JD, Stahl DA, ... Baliga NS, et al. Mechanism for microbial population collapse in a fluctuating resource environment. Molecular Systems Biology. 13: 919. PMID 28320772 DOI: 10.15252/Msb.20167058  0.36
2016 Patra B, Kon Y, Yadav G, Sevold AW, Frumkin JP, Vallabhajosyula RR, Hintze A, Østman B, Schossau J, Bhan A, Marzolf B, Tamashiro JK, Kaur A, Baliga NS, Grayhack EJ, et al. A genome wide dosage suppressor network reveals genomic robustness. Nucleic Acids Research. PMID 27899637 DOI: 10.1093/Nar/Gkw1148  0.52
2016 Peterson EJ, Ma S, Sherman DR, Baliga NS. Network analysis identifies Rv0324 and Rv0880 as regulators of bedaquiline tolerance in Mycobacterium tuberculosis. Nature Microbiology. 1: 16078. PMID 27573104 DOI: 10.1038/Nmicrobiol.2016.78  1
2016 Plaisier CL, O'Brien S, Bernard B, Reynolds S, Simon Z, Toledo CM, Ding Y, Reiss DJ, Paddison PJ, Baliga NS. Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis. Cell Systems. PMID 27426982 DOI: 10.1016/j.cels.2016.06.006  1
2015 López García de Lomana A, Schäuble S, Valenzuela J, Imam S, Carter W, Bilgin DD, Yohn CB, Turkarslan S, Reiss DJ, Orellana MV, Price ND, Baliga NS. Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii. Biotechnology For Biofuels. 8: 207. PMID 26633994 DOI: 10.1186/S13068-015-0391-Z  0.36
2015 Ashworth J, Turkarslan S, Harris M, Orellana MV, Baliga NS. Pan-transcriptomic analysis identifies coordinated and orthologous functional modules in the diatoms Thalassiosira pseudonana and Phaeodactylum tricornutum. Marine Genomics. PMID 26560047 DOI: 10.1016/J.Margen.2015.10.011  1
2015 Imam S, Schäuble S, Valenzuela J, López García de Lomana A, Carter W, Price ND, Baliga NS. A refined genome-scale reconstruction of Chlamydomonas metabolism provides a platform for systems-level analyses. The Plant Journal : For Cell and Molecular Biology. PMID 26485611 DOI: 10.1111/Tpj.13059  1
2015 Turkarslan S, Peterson EJ, Rustad TR, Minch KJ, Reiss DJ, Morrison R, Ma S, Price ND, Sherman DR, Baliga NS. A comprehensive map of genome-wide gene regulation in Mycobacterium tuberculosis. Scientific Data. 2: 150010. PMID 25977815 DOI: 10.1038/Sdata.2015.10  1
2015 Danziger SA, Reiss DJ, Ratushny AV, Smith JJ, Plaisier CL, Aitchison JD, Baliga NS. Bicluster Sampled Coherence Metric (BSCM) provides an accurate environmental context for phenotype predictions. Bmc Systems Biology. 9: S1. PMID 25881257 DOI: 10.1186/1752-0509-9-S2-S1  1
2015 Reiss DJ, Plaisier CL, Wu WJ, Baliga NS. cMonkey2: Automated, systematic, integrated detection of co-regulated gene modules for any organism. Nucleic Acids Research. PMID 25873626 DOI: 10.1093/nar/gkv300  1
2015 Minch KJ, Rustad TR, Peterson EJ, Winkler J, Reiss DJ, Ma S, Hickey M, Brabant W, Morrison B, Turkarslan S, Mawhinney C, Galagan JE, Price ND, Baliga NS, Sherman DR. The DNA-binding network of Mycobacterium tuberculosis. Nature Communications. 6: 5829. PMID 25581030 DOI: 10.1038/Ncomms6829  1
2015 Imam S, Schäuble S, Brooks AN, Baliga NS, Price ND. Data-driven integration of genome-scale regulatory and metabolic network models Frontiers in Microbiology. 6. DOI: 10.3389/fmicb.2015.00409  1
2015 Hennon GMM, Ashworth J, Groussman RD, Berthiaume C, Morales RL, Baliga NS, Orellana MV, Armbrust EV. Diatom acclimation to elevated CO 2 via cAMP signalling and coordinated gene expression Nature Climate Change. 5: 761-765. DOI: 10.1038/Nclimate2683  1
2015 Thompson AW, Crow MJ, Wadey B, Arens C, Turkarslan S, Stolyar S, Elliott N, Petersen TW, van den Engh G, Stahl DA, Baliga NS. A method to analyze, sort, and retain viability of obligate anaerobic microorganisms from complex microbial communities Journal of Microbiological Methods. 117: 74-77. DOI: 10.1016/j.mimet.2015.07.009  1
2014 Muller EE, Pinel N, Laczny CC, Hoopmann MR, Narayanasamy S, Lebrun LA, Roume H, Lin J, May P, Hicks ND, Heintz-Buschart A, Wampach L, Liu CM, Price LB, Gillece JD, ... ... Baliga NS, et al. Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage. Nature Communications. 5: 5603. PMID 25424998 DOI: 10.1038/Ncomms6603  1
2014 Plaisier CL, Lo FY, Ashworth J, Brooks AN, Beer KD, Kaur A, Pan M, Reiss DJ, Facciotti MT, Baliga NS. Evolution of context dependent regulation by expansion of feast/famine regulatory proteins. Bmc Systems Biology. 8: 122. PMID 25394904 DOI: 10.1186/S12918-014-0122-2  0.72
2014 Hillesland KL, Lim S, Flowers JJ, Turkarslan S, Pinel N, Zane GM, Elliott N, Qin Y, Wu L, Baliga NS, Zhou J, Wall JD, Stahl DA. Erosion of functional independence early in the evolution of a microbial mutualism. Proceedings of the National Academy of Sciences of the United States of America. 111: 14822-7. PMID 25267659 DOI: 10.1073/Pnas.1407986111  1
2014 Ashworth J, Plaisier CL, Lo FY, Reiss DJ, Baliga NS. Inference of expanded Lrp-like feast/famine transcription factor targets in a non-model organism using protein structure-based prediction. Plos One. 9: e107863. PMID 25255272 DOI: 10.1371/Journal.Pone.0107863  1
2014 Peterson EJ, Reiss DJ, Turkarslan S, Minch KJ, Rustad T, Plaisier CL, Longabaugh WJ, Sherman DR, Baliga NS. A high-resolution network model for global gene regulation in Mycobacterium tuberculosis. Nucleic Acids Research. 42: 11291-303. PMID 25232098 DOI: 10.1093/nar/gku777  1
2014 Brooks AN, Reiss DJ, Allard A, Wu WJ, Salvanha DM, Plaisier CL, Chandrasekaran S, Pan M, Kaur A, Baliga NS. A system-level model for the microbial regulatory genome. Molecular Systems Biology. 10: 740. PMID 25028489 DOI: 10.15252/Msb.20145160  1
2014 Wurtmann EJ, Ratushny AV, Pan M, Beer KD, Aitchison JD, Baliga NS. An evolutionarily conserved RNase-based mechanism for repression of transcriptional positive autoregulation. Molecular Microbiology. 92: 369-82. PMID 24612392 DOI: 10.1111/mmi.12564  0.52
2014 Ekici S, Turkarslan S, Pawlik G, Dancis A, Baliga NS, Koch HG, Daldal F. Intracytoplasmic copper homeostasis controls cytochrome c oxidase production. Mbio. 5: e01055-13. PMID 24425735 DOI: 10.1128/Mbio.01055-13  1
2014 Turkarslan S, Wurtmann EJ, Wu WJ, Jiang N, Bare JC, Foley K, Reiss DJ, Novichkov P, Baliga NS. Network portal: a database for storage, analysis and visualization of biological networks. Nucleic Acids Research. 42: D184-90. PMID 24271392 DOI: 10.1093/nar/gkt1190  1
2014 Danziger SA, Ratushny AV, Smith JJ, Saleem RA, Wan Y, Arens CE, Armstrong AM, Sitko K, Chen WM, Chiang JH, Reiss DJ, Baliga NS, Aitchison JD. Molecular mechanisms of system responses to novel stimuli are predictable from public data. Nucleic Acids Research. 42: 1442-60. PMID 24185701 DOI: 10.1093/Nar/Gkt938  1
2013 Ho Yoon S, Turkarslan S, Reiss DJ, Pan M, Burn JA, Costa KC, Lie TJ, Slagel J, Moritz RL, Hackett M, Leigh JA, Baliga NS. A systems level predictive model for global gene regulation of methanogenesis in a hydrogenotrophic methanogen Genome Research. 23: 1839-1851. PMID 24089473 DOI: 10.1101/gr.153916.112  1
2013 Orellana MV, Pang WL, Durand PM, Whitehead K, Baliga NS. A role for programmed cell death in the microbial loop. Plos One. 8: e62595. PMID 23667496 DOI: 10.1371/Journal.Pone.0062595  1
2013 Ashworth J, Coesel S, Lee A, Armbrust EV, Orellana MV, Baliga NS. Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana. Proceedings of the National Academy of Sciences of the United States of America. 110: 7518-23. PMID 23596211 DOI: 10.1073/Pnas.1300962110  1
2013 Pang WL, Kaur A, Ratushny AV, Cvetkovic A, Kumar S, Pan M, Arkin AP, Aitchison JD, Adams MW, Baliga NS. Metallochaperones regulate intracellular copper levels. Plos Computational Biology. 9: e1002880. PMID 23349626 DOI: 10.1371/Journal.Pcbi.1002880  1
2013 Costa KC, Yoon SH, Pan M, Burn JA, Baliga NS, Leigh JA. Effects of H2 and formate on growth yield and regulation of methanogenesis in Methanococcus maripaludis. Journal of Bacteriology. 195: 1456-62. PMID 23335420 DOI: 10.1128/JB.02141-12  0.52
2013 Rustad TR, Minch KJ, Brabant W, Winkler JK, Reiss DJ, Baliga NS, Sherman DR. Global analysis of mRNA stability in Mycobacterium tuberculosis. Nucleic Acids Research. 41: 509-17. PMID 23125364 DOI: 10.1093/nar/gks1019  1
2012 Muller EE, Pinel N, Gillece JD, Schupp JM, Price LB, Engelthaler DM, Levantesi C, Tandoi V, Luong K, Baliga NS, Korlach J, Keim PS, Wilmes P. Genome sequence of "Candidatus Microthrix parvicella" Bio17-1, a long-chain-fatty-acid-accumulating filamentous actinobacterium from a biological wastewater treatment plant. Journal of Bacteriology. 194: 6670-1. PMID 23144412 DOI: 10.1128/Jb.01765-12  1
2012 Plaisier CL, Pan M, Baliga NS. A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers. Genome Research. 22: 2302-14. PMID 22745231 DOI: 10.1101/gr.133991.111  0.52
2012 Edgar RS, Green EW, Zhao Y, van Ooijen G, Olmedo M, Qin X, Xu Y, Pan M, Valekunja UK, Feeney KA, Maywood ES, Hastings MH, Baliga NS, Merrow M, Millar AJ, et al. Peroxiredoxins are conserved markers of circadian rhythms. Nature. 485: 459-64. PMID 22622569 DOI: 10.1038/Nature11088  1
2012 Ashworth J, Wurtmann EJ, Baliga NS. Reverse engineering systems models of regulation: discovery, prediction and mechanisms. Current Opinion in Biotechnology. 23: 598-603. PMID 22209016 DOI: 10.1016/J.Copbio.2011.12.005  1
2012 Edgar RS, Green EW, Zhao Y, van Ooijen G, Olmedo M, Qin X, Xu Y, Pan M, Valekunja UK, Feeney KA, Maywood ES, Hastings MH, Baliga NS, Merrow M, Millar AJ, et al. Erratum: Corrigendum: Peroxiredoxins are conserved markers of circadian rhythms Nature. 489: 590-590. DOI: 10.1038/Nature11427  0.52
2011 Turkarslan S, Reiss DJ, Gibbins G, Su WL, Pan M, Bare JC, Plaisier CL, Baliga NS. Niche adaptation by expansion and reprogramming of general transcription factors. Molecular Systems Biology. 7: 554. PMID 22108796 DOI: 10.1038/msb.2011.87  1
2011 Yoon SH, Reiss DJ, Bare JC, Tenenbaum D, Pan M, Slagel J, Moritz RL, Lim S, Hackett M, Menon AL, Adams MW, Barnebey A, Yannone SM, Leigh JA, Baliga NS. Parallel evolution of transcriptome architecture during genome reorganization. Genome Research. 21: 1892-904. PMID 21750103 DOI: 10.1101/gr.122218.111  1
2011 Robinson CK, Webb K, Kaur A, Jaruga P, Dizdaroglu M, Baliga NS, Place A, Diruggiero J. A major role for nonenzymatic antioxidant processes in the radioresistance of Halobacterium salinarum. Journal of Bacteriology. 193: 1653-62. PMID 21278285 DOI: 10.1128/Jb.01310-10  1
2011 Brooks AN, Turkarslan S, Beer KD, Lo FY, Baliga NS. Adaptation of cells to new environments. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 3: 544-61. PMID 21197660 DOI: 10.1002/wsbm.136  1
2011 Tautenhahn R, Patti GJ, Kalisiak E, Miyamoto T, Schmidt M, Lo FY, McBee J, Baliga NS, Siuzdak G. metaXCMS: second-order analysis of untargeted metabolomics data. Analytical Chemistry. 83: 696-700. PMID 21174458 DOI: 10.1021/Ac102980G  1
2011 Schmid AK, Pan M, Sharma K, Baliga NS. Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon. Nucleic Acids Research. 39: 2519-33. PMID 21109526 DOI: 10.1093/Nar/Gkq1211  1
2010 Kaur A, Van PT, Busch CR, Robinson CK, Pan M, Pang WL, Reiss DJ, DiRuggiero J, Baliga NS. Coordination of frontline defense mechanisms under severe oxidative stress. Molecular Systems Biology. 6: 393. PMID 20664639 DOI: 10.1038/Msb.2010.50  1
2010 Bare JC, Koide T, Reiss DJ, Tenenbaum D, Baliga NS. Integration and visualization of systems biology data in context of the genome. Bmc Bioinformatics. 11: 382. PMID 20642854 DOI: 10.1186/1471-2105-11-382  0.36
2010 Facciotti MT, Pang WL, Lo FY, Whitehead K, Koide T, Masumura K, Pan M, Kaur A, Larsen DJ, Reiss DJ, Hoang L, Kalisiak E, Northen T, Trauger SA, Siuzdak G, ... Baliga NS, et al. Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis. Bmc Systems Biology. 4: 64. PMID 20470417 DOI: 10.1186/1752-0509-4-64  1
2010 Gehlenborg N, O'Donoghue SI, Baliga NS, Goesmann A, Hibbs MA, Kitano H, Kohlbacher O, Neuweger H, Schneider R, Tenenbaum D, Gavin AC. Visualization of omics data for systems biology. Nature Methods. 7: S56-68. PMID 20195258 DOI: 10.1038/Nmeth.1436  1
2009 Koide T, Reiss DJ, Bare JC, Pang WL, Facciotti MT, Schmid AK, Pan M, Marzolf B, Van PT, Lo FY, Pratap A, Deutsch EW, Peterson A, Martin D, Baliga NS. Prevalence of transcription promoters within archaeal operons and coding sequences. Molecular Systems Biology. 5: 285. PMID 19536208 DOI: 10.1038/Msb.2009.42  1
2009 Schmid AK, Reiss DJ, Pan M, Koide T, Baliga NS. A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability. Molecular Systems Biology. 5: 282. PMID 19536205 DOI: 10.1038/Msb.2009.40  1
2009 Whitehead K, Pan M, Masumura K, Bonneau R, Baliga NS. Diurnally entrained anticipatory behavior in archaea. Plos One. 4: e5485. PMID 19424498 DOI: 10.1371/Journal.Pone.0005485  0.52
2008 Van PT, Schmid AK, King NL, Kaur A, Pan M, Whitehead K, Koide T, Facciotti MT, Goo YA, Deutsch EW, Reiss DJ, Mallick P, Baliga NS. Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage. Journal of Proteome Research. 7: 3755-64. PMID 18652504 DOI: 10.1021/Pr800031F  1
2008 Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A. CTCF physically links cohesin to chromatin. Proceedings of the National Academy of Sciences of the United States of America. 105: 8309-14. PMID 18550811 DOI: 10.1073/Pnas.0801273105  0.36
2008 Reiss DJ, Facciotti MT, Baliga NS. Model-based deconvolution of genome-wide DNA binding. Bioinformatics (Oxford, England). 24: 396-403. PMID 18056063 DOI: 10.1093/Bioinformatics/Btm592  1
2007 Bonneau R, Facciotti MT, Reiss DJ, Schmid AK, Pan M, Kaur A, Thorsson V, Shannon P, Johnson MH, Bare JC, Longabaugh W, Vuthoori M, Whitehead K, Madar A, Suzuki L, ... ... Baliga NS, et al. A predictive model for transcriptional control of physiology in a free living cell. Cell. 131: 1354-65. PMID 18160043 DOI: 10.1016/J.Cell.2007.10.053  1
2007 Bare JC, Shannon PT, Schmid AK, Baliga NS. The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications. Bmc Bioinformatics. 8: 456. PMID 18021453 DOI: 10.1186/1471-2105-8-456  1
2007 Schmid AK, Reiss DJ, Kaur A, Pan M, King N, Van PT, Hohmann L, Martin DB, Baliga NS. The anatomy of microbial cell state transitions in response to oxygen. Genome Research. 17: 1399-413. PMID 17785531 DOI: 10.1101/Gr.6728007  1
2007 Facciotti MT, Reiss DJ, Pan M, Kaur A, Vuthoori M, Bonneau R, Shannon P, Srivastava A, Donohoe SM, Hood LE, Baliga NS. General transcription factor specified global gene regulation in archaea. Proceedings of the National Academy of Sciences of the United States of America. 104: 4630-5. PMID 17360575 DOI: 10.1073/Pnas.0611663104  1
2006 Whitehead K, Kish A, Pan M, Kaur A, Reiss DJ, King N, Hohmann L, DiRuggiero J, Baliga NS. An integrated systems approach for understanding cellular responses to gamma radiation. Molecular Systems Biology. 2: 47. PMID 16969339 DOI: 10.1038/Msb4100091  1
2006 Kaur A, Pan M, Meislin M, Facciotti MT, El-Gewely R, Baliga NS. A systems view of haloarchaeal strategies to withstand stress from transition metals. Genome Research. 16: 841-54. PMID 16751342 DOI: 10.1101/Gr.5189606  1
2006 Reiss DJ, Baliga NS, Bonneau R. Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks. Bmc Bioinformatics. 7: 280. PMID 16749936 DOI: 10.1186/1471-2105-7-280  0.48
2006 Bonneau R, Reiss DJ, Shannon P, Facciotti M, Hood L, Baliga NS, Thorsson V. The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo. Genome Biology. 7: R36. PMID 16686963 DOI: 10.1186/Gb-2006-7-5-R36  1
2006 Shannon PT, Reiss DJ, Bonneau R, Baliga NS. The Gaggle: an open-source software system for integrating bioinformatics software and data sources. Bmc Bioinformatics. 7: 176. PMID 16569235 DOI: 10.1186/1471-2105-7-176  0.48
2004 Baliga NS, Bonneau R, Facciotti MT, Pan M, Glusman G, Deutsch EW, Shannon P, Chiu Y, Weng RS, Gan RR, Hung P, Date SV, Marcotte E, Hood L, Ng WV. Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. Genome Research. 14: 2221-34. PMID 15520287 DOI: 10.1101/Gr.2700304  1
2004 Weston AD, Baliga NS, Bonneau R, Hood L. Systems approaches applied to the study of Saccharomyces cerevisiae and Halobacterium sp. Cold Spring Harbor Symposia On Quantitative Biology. 68: 345-57. PMID 15338636 DOI: 10.1101/Sqb.2003.68.345  0.56
2004 Bonneau R, Baliga NS, Deutsch EW, Shannon P, Hood L. Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1. Genome Biology. 5: R52. PMID 15287974 DOI: 10.1186/Gb-2004-5-8-R52  0.92
2004 Baliga NS, Bjork SJ, Bonneau R, Pan M, Iloanusi C, Kottemann MC, Hood L, DiRuggiero J. Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1. Genome Research. 14: 1025-35. PMID 15140832 DOI: 10.1101/Gr.1993504  1
2004 Facciotti MT, Cheung VS, Lunde CS, Rouhani S, Baliga NS, Glaeser RM. Specificity of Anion Binding in the Substrate Pocket of Bacteriorhodopsin Biochemistry. 43: 4934-4943. PMID 15109251 DOI: 10.1021/Bi035757S  1
2004 Goo YA, Roach J, Glusman G, Baliga NS, Deutsch K, Pan M, Kennedy S, DasSarma S, Ng WV, Hood L. Low-pass sequencing for microbial comparative genomics. Bmc Genomics. 5: 3. PMID 14718067 DOI: 10.1186/1471-2164-5-3  1
2003 Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Research. 13: 2498-504. PMID 14597658 DOI: 10.1101/Gr.1239303  1
2003 Goo YA, Yi EC, Baliga NS, Tao WA, Pan M, Aebersold R, Goodlett DR, Hood L, Ng WV. Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. Molecular & Cellular Proteomics : McP. 2: 506-24. PMID 12872007 DOI: 10.1074/Mcp.M300044-Mcp200  1
2002 Baliga NS, Pan M, Goo YA, Yi EC, Goodlett DR, Dimitrov K, Shannon P, Aebersold R, Ng WV, Hood L. Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proceedings of the National Academy of Sciences of the United States of America. 99: 14913-8. PMID 12403819 DOI: 10.1073/Pnas.192558999  0.92
2001 Dassarma S, Kennedy SP, Berquist B, Victor Ng W, Baliga NS, Spudich JL, Krebs MP, Eisen JA, Johnson CH, Hood L. Genomic perspective on the photobiology of Halobacterium species NRC-1, a phototrophic, phototactic, and UV-tolerant haloarchaeon. Photosynthesis Research. 70: 3-17. PMID 16228359 DOI: 10.1023/A:1013879706863  1
2001 Baliga NS, Kennedy SP, Ng WV, Hood L, DasSarma S. Genomic and genetic dissection of an archaeal regulon. Proceedings of the National Academy of Sciences of the United States of America. 98: 2521-5. PMID 11226271 DOI: 10.1073/Pnas.051632498  1
2000 Ng WV, Kennedy SP, Mahairas GG, Berquist B, Pan M, Shukla HD, Lasky SR, Baliga NS, Thorsson V, Sbrogna J, Swartzell S, Weir D, Hall J, Dahl TA, Welti R, et al. Genome sequence of Halobacterium species NRC-1. Proceedings of the National Academy of Sciences of the United States of America. 97: 12176-81. PMID 11016950 DOI: 10.1073/Pnas.190337797  1
2000 Baliga NS, Goo YA, Ng WV, Hood L, Daniels CJ, DasSarma S. Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors? Molecular Microbiology. 36: 1184-5. PMID 10844702 DOI: 10.1046/J.1365-2958.2000.01916.X  1
2000 Baliga NS, DasSarma S. Saturation mutagenesis of the haloarchaeal bop gene promoter: identification of DNA supercoiling sensitivity sites and absence of TFB recognition element and UAS enhancer activity. Molecular Microbiology. 36: 1175-83. PMID 10844701 DOI: 10.1046/j.1365-2958.2000.01915.x  1
1999 Baliga NS, DasSarma S. Saturation mutagenesis of the TATA box and upstream activator sequence in the haloarchaeal bop gene promoter. Journal of Bacteriology. 181: 2513-8. PMID 10198017  1
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