Trey K. Sato - Publications

2001-2004 Wisconsin Energy Institute University of Wisconsin, Madison, Madison, WI 

18/53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 DeBruyne JP, Baggs JE, Sato TK, Hogenesch JB. Ubiquitin ligase Siah2 regulates RevErbα degradation and the mammalian circadian clock. Proceedings of the National Academy of Sciences of the United States of America. 112: 12420-5. PMID 26392558 DOI: 10.1073/pnas.1501204112  0.92
2014 Anafi RC, Lee Y, Sato TK, Venkataraman A, Ramanathan C, Kavakli IH, Hughes ME, Baggs JE, Growe J, Liu AC, Kim J, Hogenesch JB. Machine learning helps identify CHRONO as a circadian clock component. Plos Biology. 12: e1001840. PMID 24737000 DOI: 10.1371/journal.pbio.1001840  0.48
2009 Warzecha CC, Sato TK, Nabet B, Hogenesch JB, Carstens RP. ESRP1 and ESRP2 are epithelial cell-type-specific regulators of FGFR2 splicing. Molecular Cell. 33: 591-601. PMID 19285943 DOI: 10.1016/j.molcel.2009.01.025  0.48
2006 Sato TK, Yamada RG, Ukai H, Baggs JE, Miraglia LJ, Kobayashi TJ, Welsh DK, Kay SA, Ueda HR, Hogenesch JB. Feedback repression is required for mammalian circadian clock function. Nature Genetics. 38: 312-9. PMID 16474406 DOI: 10.1038/ng1745  0.48
2004 Sato TK, Panda S, Miraglia LJ, Reyes TM, Rudic RD, McNamara P, Naik KA, FitzGerald GA, Kay SA, Hogenesch JB. A functional genomics strategy reveals Rora as a component of the mammalian circadian clock. Neuron. 43: 527-37. PMID 15312651 DOI: 10.1016/j.neuron.2004.07.018  0.96
2003 Panda S, Provencio I, Tu DC, Pires SS, Rollag MD, Castrucci AM, Pletcher MT, Sato TK, Wiltshire T, Andahazy M, Kay SA, Van Gelder RN, Hogenesch JB. Melanopsin is required for non-image-forming photic responses in blind mice. Science (New York, N.Y.). 301: 525-7. PMID 12829787 DOI: 10.1126/science.1086179  0.96
2003 Sato TK, Panda S, Kay SA, Hogenesch JB. DNA arrays: applications and implications for circadian biology. Journal of Biological Rhythms. 18: 96-105. PMID 12693865  0.96
2003 Panda S, Sato TK, Hampton GM, Hogenesch JB. An array of insights: application of DNA chip technology in the study of cell biology. Trends in Cell Biology. 13: 151-6. PMID 12628348  0.96
2002 Panda S, Sato TK, Castrucci AM, Rollag MD, DeGrip WJ, Hogenesch JB, Provencio I, Kay SA. Melanopsin (Opn4) requirement for normal light-induced circadian phase shifting. Science (New York, N.Y.). 298: 2213-6. PMID 12481141 DOI: 10.1126/science.1076848  0.96
2002 Nice DC, Sato TK, Stromhaug PE, Emr SD, Klionsky DJ. Cooperative binding of the cytoplasm to vacuole targeting pathway proteins, Cvt13 and Cvt20, to phosphatidylinositol 3-phosphate at the pre-autophagosomal structure is required for selective autophagy. The Journal of Biological Chemistry. 277: 30198-207. PMID 12048214 DOI: 10.1074/jbc.M204736200  0.48
2002 Zhong Q, Lazar CS, Tronchère H, Sato T, Meerloo T, Yeo M, Songyang Z, Emr SD, Gill GN. Endosomal localization and function of sorting nexin 1. Proceedings of the National Academy of Sciences of the United States of America. 99: 6767-72. PMID 11997453 DOI: 10.1073/pnas.092142699  0.48
2002 Gary JD, Sato TK, Stefan CJ, Bonangelino CJ, Weisman LS, Emr SD. Regulation of Fab1 phosphatidylinositol 3-phosphate 5-kinase pathway by Vac7 protein and Fig4, a polyphosphoinositide phosphatase family member. Molecular Biology of the Cell. 13: 1238-51. PMID 11950935 DOI: 10.1091/mbc.01-10-0498  0.48
2001 Sato TK, Overduin M, Emr SD. Location, location, location: membrane targeting directed by PX domains. Science (New York, N.Y.). 294: 1881-5. PMID 11729306 DOI: 10.1126/science.1065763  0.48
2001 Cheever ML, Sato TK, de Beer T, Kutateladze TG, Emr SD, Overduin M. Phox domain interaction with PtdIns(3)P targets the Vam7 t-SNARE to vacuole membranes. Nature Cell Biology. 3: 613-8. PMID 11433291 DOI: 10.1038/35083000  0.48
2000 Wurmser AE, Sato TK, Emr SD. New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. The Journal of Cell Biology. 151: 551-62. PMID 11062257 DOI: 10.1083/jcb.151.3.551  0.48
2000 Sato TK, Rehling P, Peterson MR, Emr SD. Class C Vps protein complex regulates vacuolar SNARE pairing and is required for vesicle docking/fusion. Molecular Cell. 6: 661-71. PMID 11030345  0.48
1998 Sato TK, Darsow T, Emr SD. Vam7p, a SNAP-25-like molecule, and Vam3p, a syntaxin homolog, function together in yeast vacuolar protein trafficking Molecular and Cellular Biology. 18: 5308-5319. PMID 9710615  0.48
1997 Babst M, Sato TK, Banta LM, Emr SD. Endosomal transport function in yeast requires a novel AAA-type ATPase, Vps4p Embo Journal. 16: 1820-1831. PMID 9155008 DOI: 10.1093/emboj/16.8.1820  0.48
Low-probability matches
2014 Sarks C, Jin M, Sato TK, Balan V, Dale BE. Studying the rapid bioconversion of lignocellulosic sugars into ethanol using high cell density fermentations with cell recycle. Biotechnology For Biofuels. 7: 73. PMID 24847379 DOI: 10.1186/1754-6834-7-73  0.08
2016 Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Avanasi Narasimhan R, McGee MA, Dickinson Q, La Reau A, Xie D, et al. Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae. Plos Genetics. 12: e1006372. PMID 27741250 DOI: 10.1371/journal.pgen.1006372  0.04
2016 McIlwain SJ, Peris D, Sardi M, Moskvin OV, Zhan F, Myers KS, Riley NM, Buzzell A, Parreiras LS, Ong IM, Landick R, Coon JJ, Gasch AP, Sato TK, Hittinger CT. Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research. G3 (Bethesda, Md.). 6: 1757-66. PMID 27172212 DOI: 10.1534/g3.116.029389  0.04
2016 Dickinson Q, Bottoms S, Hinchman L, McIlwain S, Li S, Myers CL, Boone C, Coon JJ, Hebert A, Sato TK, Landick R, Piotrowski JS. Mechanism of imidazolium ionic liquids toxicity in Saccharomyces cerevisiae and rational engineering of a tolerant, xylose-fermenting strain. Microbial Cell Factories. 15: 17. PMID 26790958 DOI: 10.1186/s12934-016-0417-7  0.04
2015 Serate J, Xie D, Pohlmann E, Donald C, Shabani M, Hinchman L, Higbee A, Mcgee M, La Reau A, Klinger GE, Li S, Myers CL, Boone C, Bates DM, Cavalier D, ... ... Sato TK, et al. Controlling microbial contamination during hydrolysis of AFEX-pretreated corn stover and switchgrass: effects on hydrolysate composition, microbial response and fermentation. Biotechnology For Biofuels. 8: 180. PMID 26583044 DOI: 10.1186/s13068-015-0356-2  0.04
2014 Wohlbach DJ, Rovinskiy N, Lewis JA, Sardi M, Schackwitz WS, Martin JA, Deshpande S, Daum CG, Lipzen A, Sato TK, Gasch AP. Comparative genomics of Saccharomyces cerevisiae natural isolates for bioenergy production. Genome Biology and Evolution. 6: 2557-66. PMID 25364804 DOI: 10.1093/gbe/evu199  0.04
2014 Parreiras LS, Breuer RJ, Avanasi Narasimhan R, Higbee AJ, La Reau A, Tremaine M, Qin L, Willis LB, Bice BD, Bonfert BL, Pinhancos RC, Balloon AJ, Uppugundla N, Liu T, Li C, ... ... Sato TK, et al. Engineering and two-stage evolution of a lignocellulosic hydrolysate-tolerant Saccharomyces cerevisiae strain for anaerobic fermentation of xylose from AFEX pretreated corn stover. Plos One. 9: e107499. PMID 25222864 DOI: 10.1371/journal.pone.0107499  0.04
2014 Piotrowski JS, Zhang Y, Bates DM, Keating DH, Sato TK, Ong IM, Landick R. Death by a thousand cuts: the challenges and diverse landscape of lignocellulosic hydrolysate inhibitors. Frontiers in Microbiology. 5: 90. PMID 24672514 DOI: 10.3389/fmicb.2014.00090  0.04
2014 Sato TK, Liu T, Parreiras LS, Williams DL, Wohlbach DJ, Bice BD, Ong IM, Breuer RJ, Qin L, Busalacchi D, Deshpande S, Daum C, Gasch AP, Hodge DB. Harnessing genetic diversity in Saccharomyces cerevisiae for fermentation of xylose in hydrolysates of alkaline hydrogen peroxide-pretreated biomass. Applied and Environmental Microbiology. 80: 540-54. PMID 24212571 DOI: 10.1128/AEM.01885-13  0.04
2013 Jin M, Bothfeld W, Austin S, Sato TK, La Reau A, Li H, Foston M, Gunawan C, LeDuc RD, Quensen JF, McGee M, Uppugundla N, Higbee A, Ranatunga R, Donald CW, et al. Effect of storage conditions on the stability and fermentability of enzymatic lignocellulosic hydrolysate. Bioresource Technology. 147: 212-20. PMID 23999256 DOI: 10.1016/j.biortech.2013.08.018  0.04
2020 Stoneman HR, Wrobel RL, Place M, Graham M, Krause DJ, De Chiara M, Liti G, Schacherer J, Landick R, Gasch AP, Sato TK, Hittinger CT. CRISpy-Pop: A Web Tool for Designing CRISPR/Cas9-Driven Genetic Modifications in Diverse Populations. G3 (Bethesda, Md.). PMID 32963084 DOI: 10.1534/g3.120.401498  0.01
2019 Zhang Y, Vera JM, Xie D, Serate J, Pohlmann E, Russell JD, Hebert AS, Coon JJ, Sato TK, Landick R. Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in . Frontiers in Microbiology. 10: 2596. PMID 31787963 DOI: 10.3389/fmicb.2019.02596  0.01
2019 Myers KS, Riley NM, MacGilvray ME, Sato TK, McGee M, Heilberger J, Coon JJ, Gasch AP. Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast. Plos Genetics. 15: e1008037. PMID 30856163 DOI: 10.1371/journal.pgen.1008037  0.01
2018 Higgins DA, Young MK, Tremaine M, Sardi M, Fletcher JM, Agnew M, Liu L, Dickinson Q, Peris D, Wrobel RL, Hittinger CT, Gasch AP, Singer SW, Simmons BA, Landick R, ... ... Sato TK, et al. Natural Variation in the Multidrug Efflux Pump Underlies Ionic Liquid Tolerance in Yeast. Genetics. PMID 30045857 DOI: 10.1534/genetics.118.301161  0.01
2018 Yang S, Vera JM, Grass J, Savvakis G, Moskvin OV, Yang Y, McIlwain SJ, Lyu Y, Zinonos I, Hebert AS, Coon JJ, Bates DM, Sato TK, Brown SD, Himmel ME, et al. Complete genome sequence and the expression pattern of plasmids of the model ethanologen ZM4 and its xylose-utilizing derivatives 8b and 2032. Biotechnology For Biofuels. 11: 125. PMID 29743953 DOI: 10.1186/s13068-018-1116-x  0.01
2018 Zhang Y, Oates LG, Serate J, Xie D, Pohlmann E, Bukhman YV, Karlen SD, Young MK, Higbee A, Eilert D, Sanford GR, Piotrowski JS, Cavalier D, Ralph J, Coon JJ, ... Sato TK, et al. Diverse lignocellulosic feedstocks can achieve high field-scale ethanol yields while providing flexibility for the biorefinery and landscape-level environmental benefits Gcb Bioenergy. 10: 825-840. DOI: 10.1111/gcbb.12533  0.01
2017 Peris D, Moriarty RV, Alexander WG, Baker E, Sylvester K, Sardi M, Langdon QK, Libkind D, Wang QM, Bai FY, Leducq JB, Charron G, Landry CR, Sampaio JP, Gonçalves P, ... ... Sato TK, et al. Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production. Biotechnology For Biofuels. 10: 78. PMID 28360936 DOI: 10.1186/s13068-017-0763-7  0.01
2017 Tran TN, Breuer RJ, Avanasi Narasimhan R, Parreiras LS, Zhang Y, Sato TK, Durrett TP. Metabolic engineering of Saccharomyces cerevisiae to produce a reduced viscosity oil from lignocellulose. Biotechnology For Biofuels. 10: 69. PMID 28331545 DOI: 10.1186/s13068-017-0751-y  0.01
2017 Simanski S, Maloof ME, Sato TK, Cavett V, Busby JC, Ayad NG. A cell based screening approach for identifying protein degradation regulators. Cell Cycle (Georgetown, Tex.). 0. PMID 28296622 DOI: 10.1080/15384101.2017.1301333  0.01
2016 Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Narasimhan RA, McGee MA, Dickinson Q, La Reau A, Xie D, et al. Correction: Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae. Plos Genetics. 12: e1006447. PMID 27828955 DOI: 10.1371/journal.pgen.1006447  0.01
2016 Ong RG, Higbee A, Bottoms S, Dickinson Q, Xie D, Smith SA, Serate J, Pohlmann E, Jones AD, Coon JJ, Sato TK, Sanford GR, Eilert D, Oates LG, Piotrowski JS, et al. Inhibition of microbial biofuel production in drought-stressed switchgrass hydrolysate. Biotechnology For Biofuels. 9: 237. PMID 27826356 DOI: 10.1186/s13068-016-0657-0  0.01
2016 Sarks C, Higbee A, Piotrowski J, Xue S, Coon JJ, Sato TK, Jin M, Balan V, Dale BE. Quantifying pretreatment degradation compounds in solution and accumulated by cells during solids and yeast recycling in the Rapid Bioconversion with Integrated recycling Technology process using AFEX™ corn stover. Bioresource Technology. 205: 24-33. PMID 26802184 DOI: 10.1016/j.biortech.2016.01.008  0.01
2015 Bukhman YV, DiPiazza NW, Piotrowski J, Shao J, Halstead AGW, Bui MD, Xie E, Sato TK. Modeling Microbial Growth Curves with GCAT Bioenergy Research. 8: 1022-1030. DOI: 10.1007/s12155-015-9584-3  0.01
2014 Mandalika A, Qin L, Sato TK, Runge T. Integrated biorefinery model based on production of furans using open-ended high yield processes Green Chem.. 16: 2480-2489. DOI: 10.1039/C3GC42424C  0.01
2013 Jin M, Sarks C, Gunawan C, Bice BD, Simonett SP, Avanasi Narasimhan R, Willis LB, Dale BE, Balan V, Sato TK. Phenotypic selection of a wild Saccharomyces cerevisiae strain for simultaneous saccharification and co-fermentation of AFEX™ pretreated corn stover. Biotechnology For Biofuels. 6: 108. PMID 23890073 DOI: 10.1186/1754-6834-6-108  0.01
2011 Wohlbach DJ, Kuo A, Sato TK, Potts KM, Salamov AA, Labutti KM, Sun H, Clum A, Pangilinan JL, Lindquist EA, Lucas S, Lapidus A, Jin M, Gunawan C, Balan V, et al. Comparative genomics of xylose-fermenting fungi for enhanced biofuel production. Proceedings of the National Academy of Sciences of the United States of America. 108: 13212-7. PMID 21788494 DOI: 10.1073/pnas.1103039108  0.01
2010 Owens L, Simanski S, Squire C, Smith A, Cartzendafner J, Cavett V, Caldwell Busby J, Sato T, Ayad NG. Activation domain-dependent degradation of somatic Wee1 kinase. The Journal of Biological Chemistry. 285: 6761-9. PMID 20038582 DOI: 10.1074/jbc.M109.093237  0.01
2001 Cheever ML, Sato TK, de Beer T, Kutateladze TG, Emr SD, Overduin M. Erratum: Errata Nature Cell Biology. 3: 618-618. DOI: 10.1038/35083007  0.01
1998 Suzuki N, Zara J, Sato T, Ong E, Bakhiet N, Oshima RG, Watson KL, Fukuda MN. A cytoplasmic protein, bystin, interacts with trophinin, tastin, and cytokeratin and may be involved in trophinin-mediated cell adhesion between trophoblast and endometrial epithelial cells. Proceedings of the National Academy of Sciences of the United States of America. 95: 5027-32. PMID 9560222 DOI: 10.1073/pnas.95.9.5027  0.01
1995 Sato T, Irie S, Kitada S, Reed JC. FAP-1: a protein tyrosine phosphatase that associates with Fas. Science (New York, N.Y.). 268: 411-5. PMID 7536343 DOI: 10.1126/science.7536343  0.01
1995 Sato T, Irie S, Reed JC. A novel member of the TRAF family of putative signal transducing proteins binds to the cytosolic domain of CD40. Febs Letters. 358: 113-8. PMID 7530216 DOI: 10.1016/0014-5793(94)01406-Q  0.01
1994 Sato T, Irie S, Krajewski S, Reed JC. Cloning and sequencing of a cDNA encoding the rat Bcl-2 protein. Gene. 140: 291-2. PMID 8144041 DOI: 10.1016/0378-1119(94)90561-4  0.01
1994 Sato T, Hanada M, Bodrug S, Irie S, Iwama N, Boise LH, Thompson CB, Golemis E, Fong L, Wang HG. Interactions among members of the Bcl-2 protein family analyzed with a yeast two-hybrid system. Proceedings of the National Academy of Sciences of the United States of America. 91: 9238-42. PMID 7937747 DOI: 10.1073/pnas.91.20.9238  0.01
1992 Spriggs MK, Koller BH, Sato T, Morrissey PJ, Fanslow WC, Smithies O, Voice RF, Widmer MB, Maliszewski CR. Beta 2-microglobulin-, CD8+ T-cell-deficient mice survive inoculation with high doses of vaccinia virus and exhibit altered IgG responses. Proceedings of the National Academy of Sciences of the United States of America. 89: 6070-4. PMID 1631092 DOI: 10.1073/pnas.89.13.6070  0.01
1991 Nakazono K, Watanabe N, Matsuno K, Sasaki J, Sato T, Inoue M. Does superoxide underlie the pathogenesis of hypertension? Proceedings of the National Academy of Sciences of the United States of America. 88: 10045-8. PMID 1658794 DOI: 10.1073/pnas.88.22.10045  0.01
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