Bernard Goffinet - Publications

Affiliations: 
University of Connecticut, Storrs, CT, United States 
Area:
Bryophyte, phylogeny, systematics
Website:
https://bryology.uconn.edu/

64 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Frangedakis E, Guzman-Chavez F, Rebmann M, Markel K, Yu Y, Perraki A, Tse SW, Liu Y, Rever J, Sauret-Gueto S, Goffinet B, Schneider H, Haseloff J. Construction of DNA Tools for Hyperexpression in Chloroplasts. Acs Synthetic Biology. PMID 34097383 DOI: 10.1021/acssynbio.0c00637  0.56
2021 Dong S, Zhang S, Zhang L, Wu H, Goffinet B, Liu Y. Plastid genomes and phylogenomics of liverworts (Marchantiophyta): Conserved genome structure but highest relative plastid substitution rate in land plants. Molecular Phylogenetics and Evolution. 161: 107171. PMID 33798674 DOI: 10.1016/j.ympev.2021.107171  0.56
2020 Sun G, Bai S, Guan Y, Wang S, Wang Q, Liu Y, Liu H, Goffinet B, Zhou Y, Paoletti M, Hu X, Haas FB, Fernandez-Pozo N, Czyrt A, Sun H, et al. Are fungi-derived genomic regions related to antagonism toward fungi in mosses? The New Phytologist. PMID 32578878 DOI: 10.1111/Nph.16776  0.56
2020 Zhang J, Fu XX, Li RQ, Zhao X, Liu Y, Li MH, Zwaenepoel A, Ma H, Goffinet B, Guan YL, Xue JY, Liao YY, Wang QF, Wang QH, Wang JY, et al. The hornwort genome and early land plant evolution. Nature Plants. PMID 32042158 DOI: 10.1038/S41477-019-0588-4  0.56
2019 Dong S, Zhao C, Zhang S, Wu H, Mu W, Wei T, Li N, Wan T, Liu H, Cui J, Zhu R, Goffinet B, Liu Y. The amount of RNA editing sites in liverwort organellar genes is correlated with GC content and nuclear PPR protein diversity. Genome Biology and Evolution. PMID 31651960 DOI: 10.1093/Gbe/Evz232  0.56
2019 Liu Y, Johnson MG, Cox CJ, Medina R, Devos N, Vanderpoorten A, Hedenäs L, Bell NE, Shevock JR, Aguero B, Quandt D, Wickett NJ, Shaw AJ, Goffinet B. Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes. Nature Communications. 10: 1485. PMID 30940807 DOI: 10.1038/S41467-019-09454-W  0.56
2017 Medina R, Johnson M, Liu Y, Wilding N, Hedderson TA, Wickett N, Goffinet B. Evolutionary dynamism in bryophytes: Phylogenomic inferences confirm rapid radiation in the moss family Funariaceae. Molecular Phylogenetics and Evolution. PMID 29222063 DOI: 10.1016/J.Ympev.2017.12.002  0.56
2016 Vigalondo B, Liu Y, Draper I, Lara F, Garilleti R, Mazimpaka V, Goffinet B. Comparing three complete mitochondrial genomes of the moss genus Hedw. Mitochondrial Dna. Part B, Resources. 1: 168-170. PMID 33473448 DOI: 10.1080/23802359.2016.1149784  0.56
2016 Johnson MG, Gardner EM, Liu Y, Medina R, Goffinet B, Shaw AJ, Zerega NJ, Wickett NJ. HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment. Applications in Plant Sciences. 4. PMID 27437175 DOI: 10.3732/Apps.1600016  0.92
2016 Budke JM, Goffinet B. Comparative Cuticle Development Reveals Taller Sporophytes Are Covered by Thicker Calyptra Cuticles in Mosses. Frontiers in Plant Science. 7: 832. PMID 27379125 DOI: 10.3389/Fpls.2016.00832  0.92
2016 Jonathan Shaw A, Devos N, Liu Y, Cox CJ, Goffinet B, Flatberg KI, Shaw B. Organellar phylogenomics of an emerging model system: Sphagnum (peatmoss). Annals of Botany. PMID 27268484 DOI: 10.1093/Aob/Mcw086  0.92
2016 Laenen B, Machac A, Gradstein SR, Shaw B, Patiño J, Désamoré A, Goffinet B, Cox CJ, Shaw AJ, Vanderpoorten A. Increased diversification rates follow shifts to bisexuality in liverworts. The New Phytologist. 210: 1121-1129. PMID 27074401 DOI: 10.1111/Nph.13835  0.36
2016 Johnson MG, Malley C, Goffinet B, Jonathan Shaw A, Wickett NJ. A phylotranscriptomic analysis of gene family expansion and evolution in the largest order of pleurocarpous mosses (Hypnales, Bryophyta). Molecular Phylogenetics and Evolution. PMID 26811877 DOI: 10.1016/J.Ympev.2016.01.008  0.92
2016 Laenen B, Machac A, Gradstein SR, Shaw B, Patiño J, Désamoré A, Goffinet B, Cox CJ, Shaw AJ, Vanderpoorten A. Increased diversification rates follow shifts to bisexuality in liverworts New Phytologist. DOI: 10.1111/nph.13835  0.92
2016 Laenen B, Machac A, Gradstein SR, Shaw B, Patiño J, Désamoré A, Goffinet B, Cox CJ, Shaw J, Vanderpoorten A. Geographical range in liverworts: Does sex really matter? Journal of Biogeography. 43: 627-635. DOI: 10.1111/Jbi.12661  0.92
2015 Lewis LR, Liu Y, Rozzi R, Goffinet B. Infraspecific variation within and across complete organellar genomes and nuclear ribosomal repeat in an early land plant. Molecular Phylogenetics and Evolution. PMID 26724407 DOI: 10.1016/J.Ympev.2015.12.005  0.92
2015 Alonso M, Medina R, Cano MJ, Jiménez JA, Goffinet B. The complete mitochondrial genome of the moss Oxystegus tenuirostris (Hook. & Taylor) A.J.E. Sm. (Pottiaceae, Bryophyta). Mitochondrial Dna. 1-2. PMID 26370465 DOI: 10.3109/19401736.2015.1082087  0.92
2015 Akiyama H, Schäfer-Verwimp A, Printarakul N, Suleiman M, Tan BC, Goffinet B, Yong KT, Müller F. Phylogenetic study of the genus Aptychella (Pylaisiadelphaceae, Musci) Bryologist. 118: 273-283. DOI: 10.1639/0007-2745-118.3.273  0.92
2015 Lendemer JC, Goffinet B. Sticta deyana: A New Endemic Photomorphic Lichen from the Imperiled Mid-Atlantic Coastal Plain of Eastern North America Systematic Botany. 40. DOI: 10.1600/036364415X689979  0.92
2014 Laenen B, Shaw B, Schneider H, Goffinet B, Paradis E, Désamoré A, Heinrichs J, Villarreal JC, Gradstein SR, McDaniel SF, Long DG, Forrest LL, Hollingsworth ML, Crandall-Stotler B, Davis EC, et al. Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts. Nature Communications. 5: 5134. PMID 25346115 DOI: 10.1038/Ncomms6134  0.92
2014 Liu Y, Cox CJ, Wang W, Goffinet B. Mitochondrial phylogenomics of early land plants: Mitigating the effects of saturation, compositional heterogeneity, and codon-usage bias Systematic Biology. 63: 862-878. PMID 25070972 DOI: 10.1093/Sysbio/Syu049  0.92
2014 Liu Y, Medina R, Goffinet B. 350 my of mitochondrial genome stasis in mosses, an early land plant lineage. Molecular Biology and Evolution. 31: 2586-91. PMID 24980738 DOI: 10.1093/Molbev/Msu199  0.56
2014 Lewis LR, Behling E, Gousse H, Qian E, Elphick CS, Lamarre JF, Bêty J, Liebezeit J, Rozzi R, Goffinet B. First evidence of bryophyte diaspores in the plumage of transequatorial migrant birds. Peerj. 2: e424. PMID 24949241 DOI: 10.7717/Peerj.424  0.92
2014 Lewis LR, Rozzi R, Goffinet B. Direct long-distance dispersal shapes a New World amphitropical disjunction in the dispersal-limited dung moss Tetraplodon (Bryopsida: Splachnaceae) Journal of Biogeography. 41: 2385-2395. DOI: 10.1111/Jbi.12385  0.92
2014 Hodkinson BP, Allen JL, Forrest LL, Goffinet B, Sérusiaux E, Andrésson OS, Miao V, Bellenger JP, Lutzoni F. Lichen-symbiotic cyanobacteria associated with Peltigera have an alternative vanadium-dependent nitrogen fixation system European Journal of Phycology. 49: 11-19. DOI: 10.1080/09670262.2013.873143  0.92
2013 Bainard JD, Forrest LL, Goffinet B, Newmaster SG. Nuclear DNA content variation and evolution in liverworts. Molecular Phylogenetics and Evolution. 68: 619-27. PMID 23624193 DOI: 10.1016/J.Ympev.2013.04.008  0.92
2013 Budke JM, Goffinet B, Jones CS. Dehydration protection provided by a maternal cuticle improves offspring fitness in the moss Funaria hygrometrica. Annals of Botany. 111: 781-9. PMID 23471009 DOI: 10.1093/Aob/Mct033  0.92
2013 Villarreal JC, Forrest LL, Wickett N, Goffinet B. The plastid genome of the hornwort Nothoceros aenigmaticus (Dendrocerotaceae): phylogenetic signal in inverted repeat expansion, pseudogenization, and intron gain. American Journal of Botany. 100: 467-77. PMID 23416362 DOI: 10.3732/Ajb.1200429  0.56
2013 Liu Y, Forrest LL, Bainard JD, Budke JM, Goffinet B. Organellar genome, nuclear ribosomal DNA repeat unit, and microsatellites isolated from a small-scale of 454 GS FLX sequencing on two mosses. Molecular Phylogenetics and Evolution. 66: 1089-94. PMID 23261712 DOI: 10.1016/J.Ympev.2012.12.006  0.92
2012 Villarreal JC, Forrest LL, McFarland K, Goffinet B. Chloroplast, mitochondrial, and nuclear microsatellites from the southern Appalachian hornwort, Nothoceros aenigmaticus (Dendrocerotaceae). American Journal of Botany. 99: e88-90. PMID 22343540 DOI: 10.3732/Ajb.1100392  0.56
2012 Liu Y, Moskwa NL, Goffinet B. Development of eight mitochondrial markers for Funariaceae (Musci) and their amplification success in other mosses. American Journal of Botany. 99: e62-5. PMID 22275765 DOI: 10.3732/Ajb.1100402  0.56
2012 Budke JM, Goffinet B, Jones CS. The cuticle on the gametophyte calyptra matures before the sporophyte cuticle in the moss Funaria hygrometrica (Funariaceae). American Journal of Botany. 99: 14-22. PMID 22210839 DOI: 10.3732/Ajb.1100311  0.92
2012 Liu Y, Budke JM, Goffinet B. Phylogenetic inference rejects sporophyte based classification of the Funariaceae (Bryophyta): rapid radiation suggests rampant homoplasy in sporophyte evolution. Molecular Phylogenetics and Evolution. 62: 130-45. PMID 21971055 DOI: 10.1016/J.Ympev.2011.09.010  0.92
2012 Huttunen S, Bell N, Bobrova VK, Buchbender V, Buck WR, Cox CJ, Goffinet B, Hedenäs L, Ho BC, Ignatov MS, Krug M, Kuznetsova O, Milyutina IA, Newton A, Olsson S, et al. Disentangling knots of rapid evolution: Origin and diversification of the moss order Hypnales Journal of Bryology. 34: 187-211. DOI: 10.1179/1743282012Y.0000000013  0.92
2012 Goffinet B, Buck WR. The Evolution of Body Form in Bryophytes The Evolution of Plant Form. 45: 51-89. DOI: 10.1002/9781118305881.ch2  0.92
2011 Wickett NJ, Forrest LL, Budke JM, Shaw B, Goffinet B. Frequent pseudogenization and loss of the plastid-encoded sulfate-transport gene cysA throughout the evolution of liverworts. American Journal of Botany. 98: 1263-75. PMID 21821590 DOI: 10.3732/Ajb.1100010  0.92
2011 Budke JM, Goffinet B, Jones CS. A hundred-year-old question: is the moss calyptra covered by a cuticle? A case study of Funaria hygrometrica. Annals of Botany. 107: 1279-86. PMID 21486928 DOI: 10.1093/Aob/Mcr079  0.92
2011 Forrest LL, Wickett NJ, Cox CJ, Goffinet B. Deep sequencing of Ptilidium (Ptilidiaceae) suggests evolutionary stasis in liverwort plastid genome structure Plant Ecology and Evolution. 144: 29-43. DOI: 10.5091/Plecevo.2011.535  0.92
2011 Goffinet B, Buck WR. Physcomitridium readeri is the correct name for Ephemerella readeri Bryologist. 114: 545-546. DOI: 10.1639/0007-2745-114.3.545  0.92
2011 Jofre J, Goffinet B, Marino P, Raguso RA, Nihei SS, Massardo F, Rozzi R. First evidence of insect attraction by a southern hemisphere splachnaceae: The case of Tayloria dubyi broth. in the reserve biosphere Cape Horn, Chile Nova Hedwigia. 92: 317-326. DOI: 10.1127/0029-5035/2011/0092-0317  0.92
2010 Magain N, Forrest LL, Sérusiaux E, Goffinet B. Microsatellite primers in the Peltigera dolichorhiza complex (lichenized ascomycete, Peltigerales). American Journal of Botany. 97: e102-4. PMID 21616786 DOI: 10.3732/Ajb.1000283  0.56
2008 Wickett NJ, Fan Y, Lewis PO, Goffinet B. Distribution and evolution of pseudogenes, gene losses, and a gene rearrangement in the plastid genome of the nonphotosynthetic liverwort, Aneura mirabilis (Metzgeriales, Jungermanniopsida). Journal of Molecular Evolution. 67: 111-22. PMID 18594897 DOI: 10.1007/S00239-008-9133-1  0.92
2008 Wickett NJ, Zhang Y, Hansen SK, Roper JM, Kuehl JV, Plock SA, Wolf PG, DePamphilis CW, Boore JL, Goffinet B. Functional gene losses occur with minimal size reduction in the plastid genome of the parasitic liverwort Aneura mirabilis. Molecular Biology and Evolution. 25: 393-401. PMID 18056074 DOI: 10.1093/Molbev/Msm267  0.92
2008 Rozzi R, Armesto JJ, Goffinet B, Buck W, Massardo F, Silander J, Arroyo MTK, Russell S, Anderson CB, Cavieres LA, Callicott JB. Changing lenses to assess biodiversity: Patterns of species richness in sub-Antarctic plants and implications for global conservation Frontiers in Ecology and the Environment. 6: 131-137. DOI: 10.1890/070020  0.92
2008 Shaw AJ, Holz I, Cox CJ, Goffinet B. Phylogeny, character evolution, and biogeography of the gondwanic moss family Hypopterygiaceae (Bryophyta) Systematic Botany. 33: 21-30. DOI: 10.1600/036364408783887311  0.92
2008 Vanderpoorten A, Devos N, Goffinet B, Hardy OJ, Shaw AJ. The barriers to oceanic island radiation in bryophytes: Insights from the phylogeography of the moss Grimmia montana Journal of Biogeography. 35: 654-663. DOI: 10.1111/J.1365-2699.2007.01802.X  0.92
2008 Goffinet B, Shaw AJ. Bryophyte biology, second edition Bryophyte Biology, Second Edition. 1-565. DOI: 10.1017/CBO9780511754807  0.92
2007 Budke JM, Jones CS, Goffinet B. Development of the enigmatic peristome of Timmia megapolitana (Timmiaceae; Bryophyta). American Journal of Botany. 94: 460-7. PMID 21636416 DOI: 10.3732/Ajb.94.3.460  0.92
2007 Goffinet B, Wickett NJ, Werner O, Ros RM, Shaw AJ, Cox CJ. Distribution and phylogenetic significance of the 71-kb inversion in the plastid genome in Funariidae (Bryophyta). Annals of Botany. 99: 747-53. PMID 17337480 DOI: 10.1093/Aob/Mcm010  0.92
2005 Goffinet B, Wickett NJ, Shaw AJ, Cox CJ. Phylogenetic significance of the rpoA loss in the chloroplast genome of mosses Taxon. 54: 353-360. DOI: 10.2307/25065363  0.92
2005 Shaw AJ, Cox CJ, Goffinet B. Global patterns of moss diversity: Taxonomic and molecular inferences Taxon. 54: 337-352. DOI: 10.2307/25065362  0.92
2004 Goffinet B, Shaw AJ, Cox CJ. Phylogenetic inferences in the dung-moss family Splachnaceae from analyses of cpDNA sequence data and implications for the evolution of entomophily. American Journal of Botany. 91: 748-59. PMID 21653429 DOI: 10.3732/Ajb.91.5.748  0.92
2004 Cox CJ, Goffinet B, Jonathan Shaw A, Boles SB. Phylogenetic relationships among the mosses based on heterogeneous Bayesian analysis of multiple genes from multiple genomic compartments Systematic Botany. 29: 234-250. DOI: 10.1600/036364404774195458  0.92
2003 Shaw AJ, Cox CJ, Goffinet B, Buck WR, Boles SB. Phylogenetic evidence of a rapid radiation of pleurocarpous mosses (Bryophyta). Evolution; International Journal of Organic Evolution. 57: 2226-41. PMID 14628911 DOI: 10.1111/J.0014-3820.2003.Tb00235.X  0.92
2003 Vanderpoorten A, Goffinet B, Hedenäs L, Cox CJ, Shaw AJ. A taxonomic reassessment of the Vittiaceae (Hypnales, Bryopsida): Evidence from phylogenetic analyses of combined chloroplast and nuclear sequence data Plant Systematics and Evolution. 241: 1-12. DOI: 10.1007/S00606-003-0032-Z  0.92
2001 Goffinet B, Cox CJ, Shaw AJ, Hedderson TAJ. The bryophyta (mosses): Systematic and evolutionary inferences from an rps4 gene (cpDNA) phylogeny Annals of Botany. 87: 191-208. DOI: 10.1006/anbo.2000.1318  0.92
2000 Buck WR, Goffinet B, Shaw AJ. Testing morphological concepts of orders of pleurocarpous mosses (Bryophyta) using phylogenetic reconstructions based on TRNL-TRNF and RPS4 sequences. Molecular Phylogenetics and Evolution. 16: 180-98. PMID 10942606 DOI: 10.1006/mpev.2000.0805  0.92
2000 Cox CJ, Goffinet B, Newton AE, Shaw AJ, Hedderson TAJ. Phylogenetic relationships among the diplolepideous-alternate mosses (Bryidae) inferred from nuclear and chloroplast DNA sequences Bryologist. 103: 224-241. DOI: 10.1639/0007-2745(2000)103[0224:Pratda]2.0.Co;2  0.92
2000 Goffinet B, Cox CJ. Phylogenetic relationships among basal-most arthrodontous mosses with special emphasis on the evolutionary significance of the Funariineae Bryologist. 103: 212-223. DOI: 10.1639/0007-2745(2000)103[0212:Prabma]2.0.Co;2  0.92
2000 Newton AE, Cox CJ, Duckett JG, Wheeler JA, Goffinet B, Hedderson TAJ, Mishler BD. Evolution of the major moss lineages: Phylogenetic analyses based on multiple gene sequences and morphology Bryologist. 103: 187-211. DOI: 10.1639/0007-2745(2000)103[0187:Eotmml]2.0.Co;2  0.92
1999 Goffinet B, Shaw J, Anderson LE, Mishler BD. Peristome development in mosses in relation to systematics and evolution. V. Diplolepideae: Orthotrichaceae Bryologist. 102: 581-594. DOI: 10.2307/3244248  0.92
1998 Goffinet B, Bayer RJ, Vitt DH. Circumscription and phylogeny of the Orthotrichales (Bryopsida) inferred from RBCL sequence analyses. American Journal of Botany. 85: 1324-37. PMID 21685018  0.96
1998 Goffinet B, Bayer RJ, Vitt DH. Circumscription and phylogeny of the Orthotrichales (Bryopsida) inferred from rbcL sequence analyses American Journal of Botany. 85: 1324-1337. DOI: 10.2307/2446642  0.92
1997 Goffinet B, Bayer RJ. Characterization of mycobionts of photomorph pairs in the peltigerineae (lichenized ascomycetes) based on internal transcribed spacer sequences of the nuclear ribosomal DNA. Fungal Genetics and Biology : Fg & B. 21: 228-37. PMID 9228791 DOI: 10.1006/Fgbi.1997.0977  0.96
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