Norman J. Wickett, Ph.D. - Publications

Affiliations: 
2007 University of Connecticut, Storrs, CT, United States 
Area:
Botany Biology

28/55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Liu Y, Johnson MG, Cox CJ, Medina R, Devos N, Vanderpoorten A, Hedenäs L, Bell NE, Shevock JR, Aguero B, Quandt D, Wickett NJ, Shaw AJ, Goffinet B. Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes. Nature Communications. 10: 1485. PMID 30940807 DOI: 10.1038/S41467-019-09454-W  0.52
2017 Medina R, Johnson M, Liu Y, Wilding N, Hedderson TA, Wickett N, Goffinet B. Evolutionary dynamism in bryophytes: Phylogenomic inferences confirm rapid radiation in the moss family Funariaceae. Molecular Phylogenetics and Evolution. PMID 29222063 DOI: 10.1016/J.Ympev.2017.12.002  0.52
2016 Johnson MG, Gardner EM, Liu Y, Medina R, Goffinet B, Shaw AJ, Zerega NJ, Wickett NJ. HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment. Applications in Plant Sciences. 4. PMID 27437175 DOI: 10.3732/Apps.1600016  0.52
2016 Johnson MG, Malley C, Goffinet B, Jonathan Shaw A, Wickett NJ. A phylotranscriptomic analysis of gene family expansion and evolution in the largest order of pleurocarpous mosses (Hypnales, Bryophyta). Molecular Phylogenetics and Evolution. PMID 26811877 DOI: 10.1016/J.Ympev.2016.01.008  0.52
2016 Honaas LA, Wafula EK, Wickett NJ, Der JP, Zhang Y, Edger PP, Altman NS, Pires JC, Leebens-Mack JH, dePamphilis CW. Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome. Plos One. 11: e0146062. PMID 26731733 DOI: 10.1371/Journal.Pone.0146062  0.52
2015 Wilson AW, Wickett NJ, Grabowski P, Fant J, Borevitz J, Mueller GM. Examining the efficacy of a genotyping-by-sequencing technique for population genetic analysis of the mushroom Laccaria bicolor and evaluating whether a reference genome is necessary to assess homology. Mycologia. 107: 217-26. PMID 25361831 DOI: 10.3852/13-278  0.52
2014 Kessenich CR, Ruck EC, Schurko AM, Wickett NJ, Alverson AJ. Transcriptomic Insights into the Life History of Bolidophytes, the Sister Lineage to Diatoms. Journal of Phycology. 50: 977-83. PMID 26988780 DOI: 10.1111/Jpy.12222  0.52
2014 Matasci N, Hung LH, Yan Z, Carpenter EJ, Wickett NJ, Mirarab S, Nguyen N, Warnow T, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Wafula E, Der JP, dePamphilis CW, et al. Data access for the 1,000 Plants (1KP) project. Gigascience. 3: 17. PMID 25625010 DOI: 10.1186/2047-217X-3-17  0.52
2014 Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA, Ruhfel BR, Wafula E, Der JP, Graham SW, Mathews S, et al. Phylotranscriptomic analysis of the origin and early diversification of land plants. Proceedings of the National Academy of Sciences of the United States of America. 111: E4859-68. PMID 25355905 DOI: 10.1073/Pnas.1323926111  0.52
2013 Wicke S, Müller KF, de Pamphilis CW, Quandt D, Wickett NJ, Zhang Y, Renner SS, Schneeweiss GM. Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family. The Plant Cell. 25: 3711-25. PMID 24143802 DOI: 10.1105/Tpc.113.113373  0.52
2013 Zhang Y, Fernandez-Aparicio M, Wafula EK, Das M, Jiao Y, Wickett NJ, Honaas LA, Ralph PE, Wojciechowski MF, Timko MP, Yoder JI, Westwood JH, Depamphilis CW. Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species. Bmc Evolutionary Biology. 13: 48. PMID 23425243 DOI: 10.1186/1471-2148-13-48  0.52
2013 Villarreal JC, Forrest LL, Wickett N, Goffinet B. The plastid genome of the hornwort Nothoceros aenigmaticus (Dendrocerotaceae): phylogenetic signal in inverted repeat expansion, pseudogenization, and intron gain. American Journal of Botany. 100: 467-77. PMID 23416362 DOI: 10.3732/Ajb.1200429  0.52
2013 Bliss BJ, Wanke S, Barakat A, Ayyampalayam S, Wickett N, Wall PK, Jiao Y, Landherr L, Ralph PE, Hu Y, Neinhuis C, Leebens-Mack J, Arumuganathan K, Clifton SW, Maximova SN, et al. Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies. Bmc Plant Biology. 13: 13. PMID 23347749 DOI: 10.1186/1471-2229-13-13  0.52
2013 Honaas LA, Wafula EK, Yang Z, Der JP, Wickett NJ, Altman NS, Taylor CG, Yoder JI, Timko MP, Westwood JH, dePamphilis CW. Functional genomics of a generalist parasitic plant: laser microdissection of host-parasite interface reveals host-specific patterns of parasite gene expression. Bmc Plant Biology. 13: 9. PMID 23302495 DOI: 10.1186/1471-2229-13-9  0.52
2013 Fernández-Aparicio M, Huang K, Wafula EK, Honaas LA, Wickett NJ, Timko MP, Depamphilis CW, Yoder JI, Westwood JH. Application of qRT-PCR and RNA-Seq analysis for the identification of housekeeping genes useful for normalization of gene expression values during Striga hermonthica development Molecular Biology Reports. 40: 3395-3407. PMID 23271128 DOI: 10.1007/S11033-012-2417-Y  0.52
2012 McKain MR, Wickett N, Zhang Y, Ayyampalayam S, McCombie WR, Chase MW, Pires JC, dePamphilis CW, Leebens-Mack J. Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae). American Journal of Botany. 99: 397-406. PMID 22301890 DOI: 10.3732/Ajb.1100537  0.52
2012 Westwood JH, Depamphilis CW, Das M, Fernndez-Aparicio M, Honaas LA, Timko MP, Wafula EK, Wickett NJ, Yoder JI. The parasitic plant genome project: New tools for understanding the biology of Orobanche and Striga Weed Science. 60: 295-306. DOI: 10.1614/Ws-D-11-00113.1  0.52
2011 Wickett NJ, Honaas LA, Wafula EK, Das M, Huang K, Wu B, Landherr L, Timko MP, Yoder J, Westwood JH, dePamphilis CW. Transcriptomes of the parasitic plant family Orobanchaceae reveal surprising conservation of chlorophyll synthesis. Current Biology : Cb. 21: 2098-104. PMID 22169535 DOI: 10.1016/J.Cub.2011.11.011  0.52
2011 Wickett NJ, Forrest LL, Budke JM, Shaw B, Goffinet B. Frequent pseudogenization and loss of the plastid-encoded sulfate-transport gene cysA throughout the evolution of liverworts. American Journal of Botany. 98: 1263-75. PMID 21821590 DOI: 10.3732/Ajb.1100010  0.52
2011 Hsu CY, Adams JP, Kim H, No K, Ma C, Strauss SH, Drnevich J, Vandervelde L, Ellis JD, Rice BM, Wickett N, Gunter LE, Tuskan GA, Brunner AM, Page GP, et al. FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar. Proceedings of the National Academy of Sciences of the United States of America. 108: 10756-61. PMID 21653885 DOI: 10.1073/Pnas.1104713108  0.52
2011 Jiao Y, Wickett NJ, Ayyampalayam S, Chanderbali AS, Landherr L, Ralph PE, Tomsho LP, Hu Y, Liang H, Soltis PS, Soltis DE, Clifton SW, Schlarbaum SE, Schuster SC, Ma H, et al. Ancestral polyploidy in seed plants and angiosperms. Nature. 473: 97-100. PMID 21478875 DOI: 10.1038/Nature09916  0.52
2011 Der JP, Barker MS, Wickett NJ, dePamphilis CW, Wolf PG. De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum. Bmc Genomics. 12: 99. PMID 21303537 DOI: 10.1186/1471-2164-12-99  0.52
2011 Forrest LL, Wickett NJ, Cox CJ, Goffinet B. Deep sequencing of Ptilidium (Ptilidiaceae) suggests evolutionary stasis in liverwort plastid genome structure Plant Ecology and Evolution. 144: 29-43. DOI: 10.5091/Plecevo.2011.535  0.52
2011 Liang H, Ayyampalayam S, Wickett N, Barakat A, Xu Y, Landherr L, Ralph PE, Jiao Y, Xu T, Schlarbaum SE, Ma H, Leebens-Mack JH, dePamphilis CW. Generation of a large-scale genomic resource for functional and comparative genomics in Liriodendron tulipifera L Tree Genetics and Genomes. 7: 941-954. DOI: 10.1007/S11295-011-0386-2  0.52
2008 Wickett NJ, Fan Y, Lewis PO, Goffinet B. Distribution and evolution of pseudogenes, gene losses, and a gene rearrangement in the plastid genome of the nonphotosynthetic liverwort, Aneura mirabilis (Metzgeriales, Jungermanniopsida). Journal of Molecular Evolution. 67: 111-22. PMID 18594897 DOI: 10.1007/S00239-008-9133-1  0.52
2008 Wickett NJ, Zhang Y, Hansen SK, Roper JM, Kuehl JV, Plock SA, Wolf PG, DePamphilis CW, Boore JL, Goffinet B. Functional gene losses occur with minimal size reduction in the plastid genome of the parasitic liverwort Aneura mirabilis. Molecular Biology and Evolution. 25: 393-401. PMID 18056074 DOI: 10.1093/Molbev/Msm267  0.52
2007 Goffinet B, Wickett NJ, Werner O, Ros RM, Shaw AJ, Cox CJ. Distribution and phylogenetic significance of the 71-kb inversion in the plastid genome in Funariidae (Bryophyta). Annals of Botany. 99: 747-53. PMID 17337480 DOI: 10.1093/Aob/Mcm010  0.52
2005 Goffinet B, Wickett NJ, Shaw AJ, Cox CJ. Phylogenetic significance of the rpoA loss in the chloroplast genome of mosses Taxon. 54: 353-360. DOI: 10.2307/25065363  0.52
Low-probability matches
2021 Carey SB, Jenkins J, Lovell JT, Maumus F, Sreedasyam A, Payton AC, Shu S, Tiley GP, Fernandez-Pozo N, Healey A, Barry K, Chen C, Wang M, Lipzen A, Daum C, ... ... Wickett NJ, et al. Gene-rich UV sex chromosomes harbor conserved regulators of sexual development. Science Advances. 7. PMID 34193417 DOI: 10.1126/sciadv.abh2488  0.24
2021 Baker WJ, Bailey P, Barber V, Barker A, Bellot S, Bishop D, Botigué LR, Brewer G, Carruthers T, Clarkson JJ, Cook J, Cowan RS, Dodsworth S, Epitawalage N, Françoso E, ... ... Wickett NJ, et al. A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life. Systematic Biology. PMID 33983440 DOI: 10.1093/sysbio/syab035  0.24
2020 Gardner EM, Johnson MG, Pereira JT, Puad ASA, Arifiani D, Wickett NJ, Zerega NJC. Paralogs and off-target sequences improve phylogenetic resolution in a densely-sampled study of the breadfruit genus (Artocarpus, Moraceae). Systematic Biology. PMID 32970819 DOI: 10.1093/sysbio/syaa073  0.24
2020 Ribeiro CL, Conde D, Balmant KM, Dervinis C, Johnson MG, McGrath AP, Szewczyk P, Unda F, Finegan CA, Schmidt HW, Miles B, Drost DR, Novaes E, Gonzalez-Benecke CA, Peter GF, ... ... Wickett NJ, et al. The uncharacterized gene contributes to vessel element dimensions in . Proceedings of the National Academy of Sciences of the United States of America. PMID 32041869 DOI: 10.1073/Pnas.1912434117  0.24
2019 Dodsworth S, Pokorny L, Johnson MG, Kim JT, Maurin O, Wickett NJ, Forest F, Baker WJ. Hyb-Seq for Flowering Plant Systematics. Trends in Plant Science. PMID 31477409 DOI: 10.1016/J.Tplants.2019.07.011  0.24
2018 Johnson MG, Pokorny L, Dodsworth S, Botigué LR, Cowan RS, Devault A, Eiserhardt WL, Epitawalage N, Forest F, Kim JT, Leebens-Mack JH, Leitch IJ, Maurin O, Soltis DE, Soltis PS, ... ... Wickett NJ, et al. A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-medoids Clustering. Systematic Biology. PMID 30535394 DOI: 10.1093/Sysbio/Syy086  0.24
2018 Villaverde T, Pokorny L, Olsson S, Rincón-Barrado M, Johnson MG, Gardner EM, Wickett NJ, Molero J, Riina R, Sanmartín I. Bridging the micro- and macroevolutionary levels in phylogenomics: Hyb-Seq solves relationships from populations to species and above. The New Phytologist. PMID 30016546 DOI: 10.1111/Nph.15312  0.24
2018 Laricchia KM, Johnson MG, Ragone D, Williams EW, Zerega NJC, Wickett NJ. A transcriptome screen for positive selection in domesticated breadfruit and its wild relatives (Artocarpus spp.). American Journal of Botany. PMID 29882953 DOI: 10.1002/Ajb2.1095  0.24
2018 Kates HR, Johnson MG, Gardner EM, Zerega NJC, Wickett NJ. Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus. American Journal of Botany. PMID 29729187 DOI: 10.1002/Ajb2.1068  0.24
2016 Gardner EM, Johnson MG, Ragone D, Wickett NJ, Zerega NJ. Low-coverage, whole-genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery. Applications in Plant Sciences. 4. PMID 27437173 DOI: 10.3732/Apps.1600017  0.24
2012 Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Zhang Y, Carpenter EJ, et al. A genome triplication associated with early diversification of the core eudicots. Genome Biology. 13: R3. PMID 22280555 DOI: 10.1186/Gb-2012-13-1-R3  0.16
2012 Bandaranayake PC, Tomilov A, Tomilova NB, Ngo QA, Wickett N, dePamphilis CW, Yoder JI. The TvPirin gene is necessary for haustorium development in the parasitic plant Triphysaria versicolor. Plant Physiology. 158: 1046-53. PMID 22128136 DOI: 10.1104/Pp.111.186858  0.16
2019 Wong GK, Soltis DE, Leebens-Mack J, Wickett NJ, Barker MS, de Peer YV, Graham SW, Melkonian M. Sequencing and Analyzing the Transcriptomes of a Thousand Species Across the Tree of Life for Green Plants. Annual Review of Plant Biology. PMID 31851546 DOI: 10.1146/Annurev-Arplant-042916-041040  0.08
2019 Carpenter EJ, Matasci N, Ayyampalayam S, Wu S, Sun J, Yu J, Jimenez Vieira FR, Bowler C, Dorrell RG, Gitzendanner MA, Li L, Du W, K Ullrich K, Wickett NJ, Barkmann TJ, et al. Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP). Gigascience. 8. PMID 31644802 DOI: 10.1093/Gigascience/Giz126  0.08
2019 Bruzzese DJ, Wagner DL, Harrison T, Jogesh T, Overson RP, Wickett NJ, Raguso RA, Skogen KA. Phylogeny, host use, and diversification in the moth family Momphidae (Lepidoptera: Gelechioidea). Plos One. 14: e0207833. PMID 31170152 DOI: 10.1371/Journal.Pone.0207833  0.01
2019 Medina R, Johnson MG, Liu Y, Wickett NJ, Shaw AJ, Goffinet B. Phylogenomic delineation of Physcomitrium (Bryophyta: Funariaceae) based on targeted sequencing of nuclear exons and their flanking regions rejects the retention of Physcomitrella , Physcomitridium and Aphanorrhegma Journal of Systematics and Evolution. 57: 404-417. DOI: 10.1111/Jse.12516  0.01
2018 Guillory WX, Onyshchenko A, Ruck EC, Parks M, Nakov T, Wickett NJ, Alverson AJ. Recurrent loss, horizontal transfer, and the obscure origins of mitochondrial introns in diatoms (Bacillariophyta). Genome Biology and Evolution. PMID 29850800 DOI: 10.1093/Gbe/Evy103  0.01
2018 Parks MB, Nakov T, Ruck EC, Wickett NJ, Alverson AJ. Phylogenomics reveals an extensive history of genome duplication in diatoms (Bacillariophyta). American Journal of Botany. PMID 29665021 DOI: 10.1002/Ajb2.1056  0.01
2018 Gitzendanner MA, Yang Y, Wickett NJ, McKain M, Beaulieu JM. Methods for exploring the plant tree of life Applications in Plant Sciences. 6: e1039. DOI: 10.1002/Aps3.1039  0.01
2017 Parks MB, Wickett NJ, Alverson AJ. Signal, Uncertainty, and Conflict in Phylogenomic Data for a Diverse Lineage of Microbial Eukaryotes (Diatoms, Bacillariophyta). Molecular Biology and Evolution. PMID 29040712 DOI: 10.1093/Molbev/Msx268  0.01
2017 Carvalho-Silva M, Stech M, Soares-Silva LH, Buck WR, Wickett NJ, Liu Y, Câmara PE. A molecular phylogeny of the Sematophyllaceae s.l. (Hypnales) based on plastid, mitochondrial and nuclear markers, and its taxonomic implications Taxon. 66: 811-831. DOI: 10.12705/664.2  0.01
2017 BRISCOE LRE, ZEREGA NJC, LUMBSCH HT, STECH M, KRAICHAK E, KONRAT MJV, ENGEL JJ, WICKETT NJ. Molecular, morphological, and biogeographic perspectives on the classification of Acrobolboideae (Acrobolbaceae, Marchantiophyta) Phytotaxa. 319: 56. DOI: 10.11646/Phytotaxa.319.1.2  0.01
2015 Das M, Fernández-Aparicio M, Yang Z, Huang K, Wickett NJ, Alford S, Wafula EK, dePamphilis C, Bouwmeester H, Timko MP, Yoder JI, Westwood JH. Parasitic Plants <i>Striga</i> and <i>Phelipanche</i> Dependent upon Exogenous Strigolactones for Germination Have Retained Genes for Strigolactone Biosynthesis American Journal of Plant Sciences. 6: 1151-1166. DOI: 10.4236/Ajps.2015.68120  0.01
2014 Cox CJ, Goffinet B, Wickett NJ, Boles SB, Shaw AJ. Moss diversity: A molecular phylogenetic analysis of genera Phytotaxa. 9: 175. DOI: 10.11646/Phytotaxa.9.1.10  0.01
2010 Preußing M, Olsson S, Schäfer-Verwimp A, Wickett NJ, Wicke S, Quandt D, Nebel M. New insights in the evolution of the liverwort family Aneuraceae (Metzgeriales, Marchantiophyta), with emphasis on the genus Lobatiriccardia Taxon. 59: 1424-1440. DOI: 10.1002/Tax.595009  0.01
2008 WICKETT NJ, GOFFINET B. Origin and relationships of the myco-heterotrophic liverwort Cryptothallus mirabilis Malmb. (Metzgeriales, Marchantiophyta) Botanical Journal of the Linnean Society. 156: 1-12. DOI: 10.1111/J.1095-8339.2007.00743.X  0.01
2005 Goffinet B, Wickett NJ, Shaw AJ, Cox CJ. Phylogenetic significance of the rpoA loss in the chloroplast genome of mosses Taxon. 54: 353-360. DOI: 10.2307/25065363  0.01
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