Kunio Miki - Publications

Affiliations: 
Chemistry-Graduate School of Science Kyoto University, Kyōto-shi, Kyōto-fu, Japan 

219 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Kageyama Y, Irie Y, Matsushima Y, Segawa T, Bellier JP, Hidaka K, Sugiyama H, Kaneda D, Hashizume Y, Akatsu H, Miki K, Kita A, Walker DG, Irie K, Tooyama I. Characterization of a Conformation-Restricted Amyloid β Peptide and Immunoreactivity of Its Antibody in Human AD brain. Acs Chemical Neuroscience. PMID 34464082 DOI: 10.1021/acschemneuro.1c00416  1
2021 Mori Y, Kawamura H, Sato T, Fujita T, Nagata R, Fujihashi M, Miki K, Atomi H. Identification and enzymatic analysis of an archaeal ATP-dependent serine kinase from the hyperthermophilic archaeon . Journal of Bacteriology. JB0002521. PMID 34096778 DOI: 10.1128/JB.00025-21  1
2021 Tashiro R, Sato T, Atomi H, Miki K, Fujihashi M. Altering the Phosphorylation Position of Pyrophosphate-Dependent -Inositol-1-Kinase Based on Its Crystal Structure. Acs Chemical Biology. 16: 794-799. PMID 33877806 DOI: 10.1021/acschembio.0c00733  1
2021 Inoue Y, Hanazono Y, Noi K, Kawamoto A, Kimatsuka M, Harada R, Takeda K, Kita R, Iwamasa N, Shibata K, Noguchi K, Shigeta Y, Namba K, Ogura T, Miki K, et al. Split conformation of Chaetomium thermophilum Hsp104 disaggregase. Structure (London, England : 1993). PMID 33651974 DOI: 10.1016/j.str.2021.02.002  1
2020 Stepanova R, Inagi H, Sugawara K, Asada K, Nishi T, Ueda D, Yasuno Y, Shinada T, Miki K, Fujihashi M, Sato T. Characterization of Class IB terpene synthase: the first crystal structure bound with substrate surrogate. Acs Chemical Biology. PMID 32227910 DOI: 10.1021/Acschembio.0C00145  1
2020 Miki K, Atomi H, Watanabe S. Structural Insight into [NiFe] Hydrogenase Maturation by Transient Complexes between Hyp Proteins. Accounts of Chemical Research. PMID 32227866 DOI: 10.1021/Acs.Accounts.0C00022  0.01
2020 Watanabe S, Miki K. Structural Biology of Maturation of [NiFe] Hydrogenases Journal of the Crystallographic Society of Japan. 62: 91-98. DOI: 10.5940/Jcrsj.62.91  0.01
2019 Tai Y, Takaba K, Hanazono Y, Dao HA, Miki K, Takeda K. X-ray crystallographic studies on the hydrogen isotope effects of green fluorescent protein at sub-ångström resolutions. Acta Crystallographica. Section D, Structural Biology. 75: 1096-1106. PMID 31793903 DOI: 10.2210/Pdb6Kkz/Pdb  1
2019 Kita A, Kishimoto A, Shimosaka T, Tomita H, Yokooji Y, Imanaka T, Atomi H, Miki K. Crystal structure of pantoate kinase from Thermococcus kodakarensis. Proteins. PMID 31697438 DOI: 10.1002/Prot.25852  1
2019 Hanazono Y, Takeda K, Miki K. Characterization of perdeuterated HiPIP with high-resolution X-ray crystallography. Proteins. PMID 31365157 DOI: 10.1002/Prot.25793  1
2019 Takaba K, Tai Y, Eki H, Dao HA, Hanazono Y, Hasegawa K, Miki K, Takeda K. Subatomic resolution X-ray structures of green fluorescent protein. Iucrj. 6: 387-400. PMID 31098020 DOI: 10.2210/Pdb6Jgj/Pdb  1
2018 Niwa S, Takeda K, Kosugi M, Tsutsumi E, Mogi T, Miki K. Crystal structure of heme A synthase from . Proceedings of the National Academy of Sciences of the United States of America. PMID 30397130 DOI: 10.1073/pnas.1813346115  1
2018 Hasegawa N, Jonotsuka H, Miki K, Takeda K. X-ray structure analysis of bacteriorhodopsin at 1.3 Å resolution. Scientific Reports. 8: 13123. PMID 30177765 DOI: 10.1038/S41598-018-31370-0  1
2018 Hanazono Y, Takeda K, Miki K. Co-translational folding of α-helical proteins: structural studies of intermediate-length variants of the λ repressor. Febs Open Bio. 8: 1312-1321. PMID 30087834 DOI: 10.1002/2211-5463.12480  1
2018 Kwon S, Watanabe S, Nishitani Y, Kawashima T, Kanai T, Atomi H, Miki K. Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA. Proceedings of the National Academy of Sciences of the United States of America. PMID 29915046 DOI: 10.1073/Pnas.1801955115  0.01
2018 Nishitani Y, Horiuchi A, Aslam M, Kanai T, Atomi H, Miki K. Crystal structures of an archaeal chitinase ChiD and its ligand complexes. Glycobiology. 28: 418-426. PMID 29800365 DOI: 10.2210/Pdb5Xsw/Pdb  0.01
2018 Fujihashi M, Sato T, Tanaka Y, Yamamoto D, Nishi T, Ueda D, Murakami M, Yasuno Y, Sekihara A, Fuku K, Shinada T, Miki K. Crystal structure and functional analysis of large-terpene synthases belonging to a newly found subclass. Chemical Science. 9: 3754-3758. PMID 29780507 DOI: 10.1039/C8Sc00289D  1
2018 Nagata R, Fujihashi M, Sato T, Atomi H, Miki K. Identification of a pyrophosphate-dependent kinase and its donor selectivity determinants. Nature Communications. 9: 1765. PMID 29720581 DOI: 10.1038/S41467-018-04201-Z  1
2018 Kwon S, Nishitani Y, Hirao Y, Kanai T, Atomi H, Miki K. Structure of a [NiFe] hydrogenase maturation protease HycI provides insights into its substrate selectivity. Biochemical and Biophysical Research Communications. PMID 29526754 DOI: 10.1016/J.Bbrc.2018.03.058  0.08
2018 Niwa S, Takeda K, Kosugi M, Tsutsumi E, Mogi T, Miki K. Crystal structure of heme A synthase fromBacillus subtilis. Proceedings of the National Academy of Sciences of the United States of America. 115: 11953-11957. DOI: 10.2210/Pdb6Ied/Pdb  1
2017 Ohno H, Takeda K, Niwa S, Tsujinaka T, Hanazono Y, Hirano Y, Miki K. Crystallographic characterization of the high-potential iron-sulfur protein in the oxidized state at 0.8 Å resolution. Plos One. 12: e0178183. PMID 28542634 DOI: 10.1371/Journal.Pone.0178183  1
2017 Kita A, Jimbo M, Sakai R, Morimoto Y, Takeuchi R, Tanaka H, Takahashi T, Miki K. Crystal structure of octocoral lectin SLL-2 complexed with Forssman antigen tetrasaccharide. Glycobiology. PMID 28510705 DOI: 10.1093/Glycob/Cwx043  1
2017 Nagata R, Fujihashi M, Kawamura H, Sato T, Fujita T, Atomi H, Miki K. Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis. Acs Chemical Biology. PMID 28358477 DOI: 10.1021/Acschembio.7B00064  1
2017 Takaba K, Takeda K, Kosugi M, Tamada T, Miki K. Distribution of valence electrons of the flavin cofactor in NADH-cytochrome b5 reductase. Scientific Reports. 7: 43162. PMID 28225078 DOI: 10.1038/Srep43162  1
2017 Takeda K, Miki K. Ultra-high-resolution structure and charge-density analysis of high-potential iron-sulfur protein. The Febs Journal. PMID 28165666 DOI: 10.1111/Febs.14036  1
2016 Hanazono Y, Takeda K, Miki K. Structural studies of the N-terminal fragments of the WW domain: Insights into co-translational folding of a beta-sheet protein. Scientific Reports. 6: 34654. PMID 27698466 DOI: 10.1038/Srep34654  1
2016 Veit S, Takeda K, Tsunoyama Y, Baymann F, Nevo R, Reich Z, Rögner M, Miki K, Rexroth S. Structural and functional characterisation of the cyanobacterial PetC3 Rieske protein family. Biochimica Et Biophysica Acta. PMID 27663073 DOI: 10.1016/J.Bbabio.2016.09.007  1
2016 Hanazono Y, Takeda K, Miki K. Characterization of the Nqo5 subunit of bacterial complex I in the isolated state. Febs Open Bio. 6: 687-95. PMID 27398308 DOI: 10.1002/2211-5463.12070  1
2016 Nishitani Y, Simons JR, Kanai T, Atomi H, Miki K. Crystal structure of the TK2203 protein from Thermococcus kodakarensis, a putative extradiol dioxygenase. Acta Crystallographica. Section F, Structural Biology Communications. 72: 427-33. PMID 27303894 DOI: 10.1107/S2053230X16006920  0.04
2016 Hirano Y, Takeda K, Miki K. Charge-density analysis of an iron-sulfur protein at an ultra-high resolution of 0.48 Å. Nature. 534: 281-4. PMID 27279229 DOI: 10.1038/Nature18001  1
2016 Fujihashi M, Nishitani Y, Kiriyama T, Aono R, Sato T, Takai T, Tagashira K, Fukuda W, Atomi H, Imanaka T, Miki K. Mutation design of a thermophilic Rubisco based on three-dimensional structure enhances its activity at ambient temperature. Proteins. PMID 27273261 DOI: 10.1002/Prot.25080  1
2016 Kwon S, Nishitani Y, Watanabe S, Hirao Y, Imanaka T, Kanai T, Atomi H, Miki K. Crystal structure of a [NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis KOD1. Proteins. PMID 27192667 DOI: 10.1002/Prot.25070  1
2016 Aikawa Y, Nishitani Y, Tomita H, Atomi H, Miki K. Crystal structure of ketopantoate reductase from Thermococcus kodakarensis complexed with NADP(.). Acta Crystallographica. Section F, Structural Biology Communications. 72: 369-75. PMID 27139828 DOI: 10.1107/S2053230X16005033  1
2016 Hanazono Y, Takeda K, Niwa S, Hibi M, Takahashi N, Kanai T, Atomi H, Miki K. Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1. Febs Letters. 590: 298-304. PMID 26823175 DOI: 10.1002/1873-3468.12055  1
2016 Aikawa Y, Nishitani Y, Tomita H, Atomi H, Miki K. Crystal structure of archaeal ketopantoate reductase complexed with coenzyme a and 2-oxopantoate provides structural insights into feedback regulation. Proteins. 84: 374-82. PMID 26757028 DOI: 10.1002/Prot.24984  1
2016 Aikawa Y, Nishitani Y, Tomita H, Atomi H, Miki K. Crystal structure of archaeal ketopantoate reductase complexed with coenzyme a and 2-oxopantoate provides structural insights into feedback regulation Proteins: Structure, Function and Bioinformatics. DOI: 10.1002/prot.24984  1
2015 Aikawa Y, Kida H, Nishitani Y, Miki K. Expression, purification, crystallization and X-ray diffraction studies of the molecular chaperone prefoldin from Homo sapiens. Acta Crystallographica. Section F, Structural Biology Communications. 71: 1189-93. PMID 26323306 DOI: 10.1107/S2053230X15013990  1
2015 Watanabe S, Kawashima T, Nishitani Y, Kanai T, Wada T, Inaba K, Atomi H, Imanaka T, Miki K. Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer. Proceedings of the National Academy of Sciences of the United States of America. 112: 7701-6. PMID 26056269 DOI: 10.1073/Pnas.1503102112  0.04
2015 Kita A, Jimbo M, Sakai R, Morimoto Y, Miki K. Crystal structure of a symbiosis-related lectin from octocoral. Glycobiology. 25: 1016-23. PMID 26022515 DOI: 10.1093/Glycob/Cwv033  1
2015 Nagata R, Fujihashi M, Sato T, Atomi H, Miki K. Crystal Structure and Product Analysis of an Archaeal myo-Inositol Kinase Reveal Substrate Recognition Mode and 3-OH Phosphorylation. Biochemistry. 54: 3494-503. PMID 25972008 DOI: 10.1021/Acs.Biochem.5B00296  1
2015 Takeda K, Niwa S, Miki K. Crystal Structure of the Complex between the Light Harvesting Core Antenna and the Photosynthetic Reaction Center (LH1-RC Complex) Journal of the Crystallographic Society of Japan. 57: 104-109. DOI: 10.5940/Jcrsj.57.104  1
2015 Numoto N, Nakagawa T, Fukumori Y, Miki K. Deoxygenated Structure of Invertebrate Giant Hemoglobin Seibutsu Butsuri. 55: 266-268. DOI: 10.2142/Biophys.55.266  0.08
2015 Nishitani Y, Horiuchi A, Kanai T, Atomi H, Miki K. Structural studies of a novel type of chitinase from archaea Acta Crystallographica Section A. 71. DOI: 10.1107/S2053273315096734  0.01
2015 Watanabe S, Kawashima T, Nishitani Y, Kanai T, Wada T, Inaba K, Atomi H, Imanaka T, Miki K. Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer Proceedings of the National Academy of Sciences of the United States of America. 112: 7701-7706. DOI: 10.1073/pnas.1503102112  1
2014 Numoto N, Nakagawa T, Ohara R, Hasegawa T, Kita A, Yoshida T, Maruyama T, Imai K, Fukumori Y, Miki K. The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins. Acta Crystallographica. Section D, Biological Crystallography. 70: 1823-31. PMID 25004960 DOI: 10.1107/S1399004714008475  1
2014 Niwa S, Yu LJ, Takeda K, Hirano Y, Kawakami T, Wang-Otomo ZY, Miki K. Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 Å. Nature. 508: 228-32. PMID 24670637 DOI: 10.1038/Nature13197  1
2014 Kishimoto A, Kita A, Ishibashi T, Tomita H, Yokooji Y, Imanaka T, Atomi H, Miki K. Crystal structure of phosphopantothenate synthetase from Thermococcus kodakarensis. Proteins. 82: 1924-36. PMID 24638914 DOI: 10.1002/Prot.24546  1
2014 Hayashi Y, Tsurumizu R, Tsukahara J, Takeda K, Narita S, Mori M, Miki K, Tokuda H. Roles of the protruding loop of factor B essential for the localization of lipoproteins (LolB) in the anchoring of bacterial triacylated proteins to the outer membrane. The Journal of Biological Chemistry. 289: 10530-9. PMID 24569999 DOI: 10.1074/Jbc.M113.539270  1
2014 Fujihashi M, Nakatani T, Hirooka K, Matsuoka H, Fujita Y, Miki K. Structural characterization of a ligand-bound form of Bacillus subtilis FadR involved in the regulation of fatty acid degradation. Proteins. 82: 1301-10. PMID 24356978 DOI: 10.1002/Prot.24496  1
2014 Miki K. 世界結晶年2014に寄せて;世界結晶年2014に寄せて;International Year of Crystallography 2014 Journal of the Crystallographic Society of Japan. 56: 347-347. DOI: 10.5940/Jcrsj.56.347  0.01
2014 Numoto N, Nakagawa T, Kita A, Ito N, Fukumori Y, Miki K. Partial oxygen-dissociation of crystalline giant hemoglobin Acta Crystallographica Section A. 70. DOI: 10.1107/S2053273314095254  1
2013 Tominaga T, Watanabe S, Matsumi R, Atomi H, Imanaka T, Miki K. Crystal structures of the carbamoylated and cyanated forms of HypE for [NiFe] hydrogenase maturation. Proceedings of the National Academy of Sciences of the United States of America. 110: 20485-90. PMID 24297906 DOI: 10.1073/Pnas.1313620110  1
2013 Fujihashi M, Ishida T, Kuroda S, Kotra LP, Pai EF, Miki K. Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase. Journal of the American Chemical Society. 135: 17432-43. PMID 24151964 DOI: 10.1021/Ja408197K  1
2013 Sato T, Fujihashi M, Miyamoto Y, Kuwata K, Kusaka E, Fujita H, Miki K, Atomi H. An uncharacterized member of the ribokinase family in Thermococcus kodakarensis exhibits myo-inositol kinase activity. The Journal of Biological Chemistry. 288: 20856-67. PMID 23737529 DOI: 10.1074/Jbc.M113.457259  1
2013 Nishitani Y, Aono R, Nakamura A, Sato T, Atomi H, Imanaka T, Miki K. Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization. Journal of Molecular Biology. 425: 2709-21. PMID 23659790 DOI: 10.1016/J.Jmb.2013.04.026  1
2013 Nagamatsu Y, Takeda K, Kuranaga T, Numoto N, Miki K. Origin of asymmetry at the intersubunit interfaces of V1-ATPase from Thermus thermophilus. Journal of Molecular Biology. 425: 2699-708. PMID 23639357 DOI: 10.1016/J.Jmb.2013.04.022  1
2013 Sasaki D, Watanabe S, Matsumi R, Shoji T, Yasukochi A, Tagashira K, Fukuda W, Kanai T, Atomi H, Imanaka T, Miki K. Identification and structure of a novel archaeal HypB for [NiFe] hydrogenase maturation. Journal of Molecular Biology. 425: 1627-40. PMID 23399544 DOI: 10.1107/S0108767312096742  0.01
2013 Fujihashi M, Mito K, Pai EF, Miki K. Atomic resolution structure of the orotidine 5'-monophosphate decarboxylase product complex combined with surface plasmon resonance analysis: implications for the catalytic mechanism. The Journal of Biological Chemistry. 288: 9011-6. PMID 23395822 DOI: 10.1074/Jbc.M112.427252  1
2013 Hanazono Y, Takeda K, Oka T, Abe T, Tomonari T, Akiyama N, Aikawa Y, Yohda M, Miki K. Nonequivalence observed for the 16-meric structure of a small heat shock protein, SpHsp16.0, from Schizosaccharomyces pombe. Structure (London, England : 1993). 21: 220-8. PMID 23273429 DOI: 10.1016/J.Str.2012.11.015  1
2012 Watanabe S, Matsumi R, Atomi H, Imanaka T, Miki K. Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation. Structure (London, England : 1993). 20: 2124-37. PMID 23123111 DOI: 10.1016/J.Str.2012.09.018  0.01
2012 Watanabe S, Sasaki D, Tominaga T, Miki K. Structural basis of [NiFe] hydrogenase maturation by Hyp proteins. Biological Chemistry. 393: 1089-100. PMID 23096350 DOI: 10.1515/Hsz-2012-0197  0.01
2012 Aono R, Sato T, Yano A, Yoshida S, Nishitani Y, Miki K, Imanaka T, Atomi H. Enzymatic characterization of AMP phosphorylase and ribose-1,5-bisphosphate isomerase functioning in an archaeal AMP metabolic pathway. Journal of Bacteriology. 194: 6847-55. PMID 23065974 DOI: 10.1128/Jb.01335-12  0.01
2012 Tominaga T, Watanabe S, Matsumi R, Atomi H, Imanaka T, Miki K. Structure of the [NiFe]-hydrogenase maturation protein HypF from Thermococcus kodakarensis KOD1. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 68: 1153-7. PMID 23027738 DOI: 10.1107/S1744309112036421  0.01
2012 Veit S, Takeda K, Tsunoyama Y, Rexroth D, Rögner M, Miki K. Structure of a thermophilic cyanobacterial b6f-type Rieske protein. Acta Crystallographica. Section D, Biological Crystallography. 68: 1400-8. PMID 22993094 DOI: 10.2210/Pdb3Azc/Pdb  1
2012 Ishibashi T, Tomita H, Yokooji Y, Morikita T, Watanabe B, Hiratake J, Kishimoto A, Kita A, Miki K, Imanaka T, Atomi H. A detailed biochemical characterization of phosphopantothenate synthetase, a novel enzyme involved in coenzyme A biosynthesis in the Archaea. Extremophiles : Life Under Extreme Conditions. 16: 819-28. PMID 22940806 DOI: 10.1007/S00792-012-0477-5  1
2012 Numoto N, Kita A, Fujii N, Miki K. A P39R mutation at the N-terminal domain of human αB-crystallin regulates its oligomeric state and chaperone-like activity. Biochemical and Biophysical Research Communications. 425: 601-6. PMID 22877753 DOI: 10.1016/J.Bbrc.2012.07.138  1
2012 Hirano Y, Kimura Y, Suzuki H, Miki K, Wang ZY. Structure analysis and comparative characterization of the cytochrome c' and flavocytochrome c from thermophilic purple photosynthetic bacterium Thermochromatium tepidum. Biochemistry. 51: 6556-67. PMID 22827326 DOI: 10.1021/Bi3005522  1
2012 Shimizu K, Kita A, Fujii N, Miki K. Structural features of isomerizable aspartyl residues in human α-crystallins. Molecular Vision. 18: 1823-7. PMID 22815635  1
2012 Hanazono Y, Takeda K, Yohda M, Miki K. Structural studies on the oligomeric transition of a small heat shock protein, StHsp14.0. Journal of Molecular Biology. 422: 100-8. PMID 22613762 DOI: 10.1016/J.Jmb.2012.05.017  1
2012 Nakamura A, Fujihashi M, Aono R, Sato T, Nishiba Y, Yoshida S, Yano A, Atomi H, Imanaka T, Miki K. Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1. The Journal of Biological Chemistry. 287: 20784-96. PMID 22511789 DOI: 10.1074/Jbc.M112.349423  1
2012 Sasaki D, Watanabe S, Kanai T, Atomi H, Imanaka T, Miki K. Characterization and in vitro interaction study of a [NiFe] hydrogenase large subunit from the hyperthermophilic archaeon Thermococcus kodakarensis KOD1. Biochemical and Biophysical Research Communications. 417: 192-6. PMID 22138400 DOI: 10.1016/J.Bbrc.2011.11.083  0.01
2012 Fujihashi M, Hiraki M, Ueno G, Baba S, Murakami H, Suzuki M, Watanabe N, Tanaka I, Nakagawa A, Wakatsuki S, Yamamoto M, Miki K. Crystal sample pins and a storage cassette system compatible with the protein crystallography beamlines at both the Photon Factory and SPring-8 Journal of Applied Crystallography. 45: 1156-1161. DOI: 10.1107/S002188981203734X  1
2011 Sasaki D, Fujihashi M, Iwata Y, Murakami M, Yoshimura T, Hemmi H, Miki K. Structure and mutation analysis of archaeal geranylgeranyl reductase. Journal of Molecular Biology. 409: 543-57. PMID 21515284 DOI: 10.1016/J.Jmb.2011.04.002  1
2011 Takeda K, Hayashi T, Abe T, Hirano Y, Hanazono Y, Yohda M, Miki K. Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0. Journal of Structural Biology. 174: 92-9. PMID 21195185 DOI: 10.1016/J.Jsb.2010.12.006  1
2011 Sasaki D, Fujihashi M, Okuyama N, Kobayashi Y, Noike M, Koyama T, Miki K. Crystal structure of heterodimeric hexaprenyl diphosphate synthase from Micrococcus luteus B-P 26 reveals that the small subunit is directly involved in the product chain length regulation. The Journal of Biological Chemistry. 286: 3729-40. PMID 21068379 DOI: 10.1074/Jbc.M110.147991  1
2011 Miki K. 2SD-06 Creation and Future Evolution of Quantum Structural Biology(2SD Sail on, Quantum Structural Biology,The 49th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 51. DOI: 10.2142/Biophys.51.S17_4  0.01
2011 Sasaki D, Fujihashi M, Okuyama N, Noike M, Koyama T, Miki K. Structural insights into function of heterodimeric prenyltransferase Acta Crystallographica Section A. 67: 774-774. DOI: 10.1107/S0108767311080421  1
2010 Orita I, Kita A, Yurimoto H, Kato N, Sakai Y, Miki K. Crystal structure of 3-hexulose-6-phosphate synthase, a member of the orotidine 5'-monophosphate decarboxylase suprafamily. Proteins. 78: 3488-92. PMID 20938979 DOI: 10.1002/Prot.22860  1
2010 Nishitani Y, Yoshida S, Fujihashi M, Kitagawa K, Doi T, Atomi H, Imanaka T, Miki K. Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile. The Journal of Biological Chemistry. 285: 39339-47. PMID 20926376 DOI: 10.1074/Jbc.M110.147587  1
2010 Su JR, Takeda K, Tamura S, Fujiki Y, Miki K. Monomer-dimer transition of the conserved N-terminal domain of the mammalian peroxisomal matrix protein import receptor, Pex14p. Biochemical and Biophysical Research Communications. 394: 217-21. PMID 20193661 DOI: 10.1016/J.Bbrc.2010.02.160  1
2010 Hirano Y, Higuchi M, Azai C, Oh-Oka H, Miki K, Wang ZY. Crystal structure of the electron carrier domain of the reaction center cytochrome c(z) subunit from green photosynthetic bacterium Chlorobium tepidum. Journal of Molecular Biology. 397: 1175-87. PMID 20156447 DOI: 10.1016/J.Jmb.2010.02.011  1
2010 Nakamura A, Takumi K, Miki K. Crystal structure of a thermophilic GrpE protein: insight into thermosensing function for the DnaK chaperone system. Journal of Molecular Biology. 396: 1000-11. PMID 20036249 DOI: 10.1016/J.Jmb.2009.12.028  0.01
2010 Takeda K, Kusumoto K, Hirano Y, Miki K. Detailed assessment of X-ray induced structural perturbation in a crystalline state protein. Journal of Structural Biology. 169: 135-44. PMID 19782139 DOI: 10.1016/J.Jsb.2009.09.012  1
2010 Numoto N, Nakagawa T, Kita A, Fukumori Y, Miki K. 1P040 1G1450 Structure transition between oxy and deoxy states of V2 hemoglobin from Lameltibrachia Satsuma(Protein:Structure & Function,Oral Presentations,The 48th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 50. DOI: 10.2142/Biophys.50.S25_6  1
2009 Fujihashi M, Miki K. [Development of automatic crystal mounting system commonly utilizable for SPring-8 and photon factory]. Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. 54: 1493-5. PMID 21089577  1
2009 Wakatsuki S, Yamamoto M, Tanaka I, Miki K, Nakagawa A. [Development of beam line X-ray crystallography targeting multiprotein complexes: Overview]. Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. 54: 1476. PMID 21089573  1
2009 Hayashi T, Abe T, Takeda K, Akiyama N, Yohda M, Miki K. Crystallization and heavy-atom derivatization of StHsp14.0, a small heat-shock protein from Sulfolobus tokodaii. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 65: 1007-10. PMID 19851008 DOI: 10.1107/S1744309109032540  1
2009 Numoto N, Hasegawa Y, Takeda K, Miki K. Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase. Embo Reports. 10: 1228-34. PMID 19779483 DOI: 10.1038/Embor.2009.202  1
2009 Watanabe S, Arai T, Matsumi R, Atomi H, Imanaka T, Miki K. Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation. Journal of Molecular Biology. 394: 448-59. PMID 19769985 DOI: 10.1016/J.Jmb.2009.09.030  0.04
2009 Higuchi M, Hirano Y, Kimura Y, Oh-oka H, Miki K, Wang ZY. Overexpression, characterization, and crystallization of the functional domain of cytochrome c(z) from Chlorobium tepidum. Photosynthesis Research. 102: 77-84. PMID 19731072 DOI: 10.1007/S11120-009-9492-5  1
2009 Akiyama N, Takeda K, Miki K. Crystal structure of a periplasmic substrate-binding protein in complex with calcium lactate. Journal of Molecular Biology. 392: 559-65. PMID 19631222 DOI: 10.1016/J.Jmb.2009.07.043  1
2009 Kichise T, Hisano T, Takeda K, Miki K. Crystal structure of phenylacetic acid degradation protein PaaG from Thermus thermophilus HB8. Proteins. 76: 779-86. PMID 19452559 DOI: 10.1002/Prot.22455  1
2009 Su JR, Takeda K, Tamura S, Fujiki Y, Miki K. Crystal structure of the conserved N-terminal domain of the peroxisomal matrix protein import receptor, Pex14p. Proceedings of the National Academy of Sciences of the United States of America. 106: 417-21. PMID 19122147 DOI: 10.1073/Pnas.0808681106  1
2009 Kita A, Tasaki S, Yohda M, Miki K. Crystal structure of PH1733, an aspartate racemase homologue, from Pyrococcus horikoshii OT3. Proteins. 74: 240-4. PMID 18831039 DOI: 10.1002/Prot.22244  1
2009 Numoto N, Nakagawa T, Fukumori Y, Miki K. 2P-011 Crystal structure of a 400 kDa hemoglobin (V2Hb) from Lamellibrachia satsuma(Protein:Structure,The 47th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 49. DOI: 10.2142/Biophys.49.S107_5  0.01
2008 Numoto N, Nakagawa T, Kita A, Sasayama Y, Fukumori Y, Miki K. Structural basis for the heterotropic and homotropic interactions of invertebrate giant hemoglobin. Biochemistry. 47: 11231-8. PMID 18834142 DOI: 10.1021/Bi8012609  1
2008 Kida H, Sugano Y, Iizuka R, Fujihashi M, Yohda M, Miki K. Structural and molecular characterization of the prefoldin beta subunit from Thermococcus strain KS-1. Journal of Molecular Biology. 383: 465-74. PMID 18775436 DOI: 10.1016/J.Jmb.2008.08.041  1
2008 Watanabe S, Oguchi Y, Takeda K, Miki K, Tokuda H. Introduction of a lethal redox switch that controls the opening and closing of the hydrophobic cavity in LolA. The Journal of Biological Chemistry. 283: 25421-7. PMID 18621730 DOI: 10.1074/Jbc.M804737200  1
2008 Oguchi Y, Takeda K, Watanabe S, Yokota N, Miki K, Tokuda H. Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release. The Journal of Biological Chemistry. 283: 25414-20. PMID 18617521 DOI: 10.1074/Jbc.M804736200  1
2008 Miki K. [Protein higher-order structure formation system]. Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. 53: 624-7. PMID 18409552  0.01
2008 Numoto N, Nakagawa T, Kita A, Sasayama Y, Fukumori Y, Miki K. Structure of the partially unliganded met state of 400 kDa hemoglobin: insights into ligand-induced structural changes of giant hemoglobins. Proteins. 73: 113-25. PMID 18398907 DOI: 10.1002/Prot.22040  1
2008 Watanabe S, Kita A, Kobayashi K, Miki K. Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA. Proceedings of the National Academy of Sciences of the United States of America. 105: 4121-6. PMID 18334645 DOI: 10.1073/Pnas.0709188105  1
2008 Hayashida M, Kim SH, Takeda K, Hisano T, Miki K. Crystal structure of N-acylamino acid racemase from Thermus thermophilus HB8. Proteins. 71: 519-23. PMID 18214979 DOI: 10.1002/Prot.21926  1
2008 Ohtaki A, Kida H, Miyata Y, Ide N, Yonezawa A, Arakawa T, Iizuka R, Noguchi K, Kita A, Odaka M, Miki K, Yohda M. Structure and molecular dynamics simulation of archaeal prefoldin: the molecular mechanism for binding and recognition of nonnative substrate proteins. Journal of Molecular Biology. 376: 1130-41. PMID 18201719 DOI: 10.1016/J.Jmb.2007.12.010  1
2008 Kajitani K, Fujihashi M, Kobayashi Y, Shimizu S, Tsujimoto Y, Miki K. Crystal structure of human cyclophilin D in complex with its inhibitor, cyclosporin A at 0.96-A resolution. Proteins. 70: 1635-9. PMID 18076075 DOI: 10.1002/Prot.21855  1
2008 Kim SH, Hisano T, Iwasaki W, Ebihara A, Miki K. Crystal structure of the flavin reductase component (HpaC) of 4-hydroxyphenylacetate 3-monooxygenase from Thermus thermophilus HB8: Structural basis for the flavin affinity Proteins: Structure, Function and Genetics. 70: 718-730. PMID 17729270 DOI: 10.1002/Prot.21534  1
2008 Hasegawa Y, Numoto N, Inaka K, Nakagawa T, Fukumori Y, Miki K. 2P-102 Crystallization of supramacromolecular complexes of proteins under microgravity condition(The 46th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 48. DOI: 10.2142/Biophys.48.S91_1  0.01
2008 Numoto N, Nakagawa T, Fukumori Y, Miki K. 1P-016 Crystal structure of a 3,600kDa hemoglobin from a tube worm Lamellibrachia satsuma at 5.6Å resolution(The 46th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 48. DOI: 10.2142/Biophys.48.S23_2  0.01
2008 Nakamura A, Wada C, Miki K. Structural basis for regulation of bifunctional roles of the F-plasmid replication initiator RepE Acta Crystallographica Section A. 64. DOI: 10.1107/S0108767308090272  0.01
2008 Kida H, Sugano Y, Iizuka R, Fujihashi M, Yohda M, Miki K. Structural and molecular characterization of the prefoldin beta subunit from Thermococcus strain Acta Crystallographica Section A. 64: 339-339. DOI: 10.1107/S0108767308089162  1
2008 Hirano Y, Higuchi M, Oh-oka H, Miki K, Wang Z-. Structural studies of the cytochrome cz from the green photosynthetic bacterium Chlorobium tepidum Acta Crystallographica Section A. 64: 376-376. DOI: 10.1107/S0108767308087990  1
2007 Nakamura A, Wada C, Miki K. Structural basis for regulation of bifunctional roles in replication initiator protein. Proceedings of the National Academy of Sciences of the United States of America. 104: 18484-9. PMID 18000058 DOI: 10.1073/Pnas.0705623104  0.01
2007 Kim SH, Hisano T, Takeda K, Iwasaki W, Ebihara A, Miki K. Crystal structure of the oxygenase component (HpaB) of the 4-hydroxyphenylacetate 3-monooxygenase from Thermus thermophilus HB8 Journal of Biological Chemistry. 282: 33107-33117. PMID 17804419 DOI: 10.1074/Jbc.M703440200  1
2007 Arai T, Watanabe S, Matsumi R, Atomi H, Imanaka T, Miki K. Crystallization and preliminary X-ray crystallographic study of [NiFe]-hydrogenase maturation factor HypE from Thermococcus kodakaraensis KOD1. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 63: 765-7. PMID 17768349 DOI: 10.1107/S1744309107038833  0.01
2007 Hirano Y, Hossain MM, Takeda K, Tokuda H, Miki K. Structural studies of the Cpx pathway activator NlpE on the outer membrane of Escherichia coli. Structure (London, England : 1993). 15: 963-76. PMID 17698001 DOI: 10.1016/J.Str.2007.06.014  1
2007 Suzuki H, Hirano Y, Kimura Y, Takaichi S, Kobayashi M, Miki K, Wang ZY. Purification, characterization and crystallization of the core complex from thermophilic purple sulfur bacterium Thermochromatium tepidum. Biochimica Et Biophysica Acta. 1767: 1057-63. PMID 17658456 DOI: 10.1016/J.Bbabio.2007.06.002  1
2007 Kim SH, Miyatake H, Hisano T, Iwasaki W, Ebihara A, Miki K. Crystallization and preliminary X-ray analysis of the oxygenase component (HpaB) of 4-hydroxyphenylacetate 3-monooxygenase from Thermus thermophilus HB8 Acta Crystallographica Section F: Structural Biology and Crystallization Communications. 63: 556-559. PMID 17620709 DOI: 10.1107/S174430910702492X  1
2007 Watanabe S, Matsumi R, Arai T, Atomi H, Imanaka T, Miki K. Crystal structures of [NiFe] hydrogenase maturation proteins HypC, HypD, and HypE: insights into cyanation reaction by thiol redox signaling. Molecular Cell. 27: 29-40. PMID 17612488 DOI: 10.1016/J.Molcel.2007.05.039  0.01
2007 Iwasaki W, Miki K. Crystal structure of the stationary phase survival protein SurE with metal ion and AMP. Journal of Molecular Biology. 371: 123-36. PMID 17561111 DOI: 10.1016/J.Jmb.2007.05.007  0.01
2007 Watanabe S, Matsumi R, Atomi H, Imanaka T, Miki K. Crystallization and preliminary X-ray crystallographic studies of the [NiFe] hydrogenase maturation proteins HypC and HypD. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 63: 538-41. PMID 17554182 DOI: 10.1107/S1744309107023391  0.01
2007 Nakamura A, Wada C, Miki K. Expression and purification of F-plasmid RepE and preliminary X-ray crystallographic study of its complex with operator DNA. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 63: 346-9. PMID 17401213 DOI: 10.1107/S1744309107012894  0.01
2007 Maruyama D, Nishitani Y, Nonaka T, Kita A, Fukami TA, Mio T, Yamada-Okabe H, Yamada-Okabe T, Miki K. Crystal structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans and catalytic reaction mechanism. The Journal of Biological Chemistry. 282: 17221-30. PMID 17392279 DOI: 10.1074/Jbc.M611873200  1
2007 Nakamura A, Sosa A, Komori H, Kita A, Miki K. Crystal structure of TTHA1657 (AT-rich DNA-binding protein; p25) from Thermus thermophilus HB8 at 2.16 A resolution. Proteins. 66: 755-9. PMID 17154156 DOI: 10.1002/Prot.21222  1
2007 Fujihashi M, Numoto N, Kobayashi Y, Mizushima A, Tsujimura M, Nakamura A, Kawarabayasi Y, Miki K. Crystal structure of archaeal photolyase from Sulfolobus tokodaii with two FAD molecules: implication of a novel light-harvesting cofactor. Journal of Molecular Biology. 365: 903-10. PMID 17107688 DOI: 10.1016/J.Jmb.2006.10.012  1
2007 Yamamoto T, Nishikawa K, Sugiyama A, Nagao H, Sugimori K, Numoto N, Miki K, Fukumori Y. 3P357 Theoretical study of sulfide-binding mechanism and free energy of giant hemoglobin of Oligobrachia mashikoi in the energy representation(Others,Poster Presentations) Seibutsu Butsuri. 47. DOI: 10.2142/Biophys.47.S292_2  0.01
2006 Watanabe S, Kita A, Kobayashi K, Takahashi Y, Miki K. Crystallization and preliminary X-ray crystallographic studies of the oxidative-stress sensor SoxR and its complex with DNA. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 62: 1275-7. PMID 17142916 DOI: 10.1107/S1744309106048482  1
2006 Hirano Y, Hossain MM, Takeda K, Tokuda H, Miki K. Purification, crystallization and preliminary X-ray crystallographic analysis of the outer membrane lipoprotein NlpE from Escherichia coli. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 62: 1227-30. PMID 17142903 DOI: 10.1107/S1744309106045313  1
2006 Maruyama D, Nishitani Y, Nonaka T, Kita A, Fukami TA, Mio T, Yamada-Okabe H, Yamada-Okabe T, Miki K. Purification, crystallization and preliminary X-ray diffraction studies of UDP-N-acetylglucosamine pyrophosphorylase from Candida albicans. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 62: 1206-8. PMID 17142897 DOI: 10.1107/S1744309106044186  1
2006 Okajima K, Fukushima Y, Suzuki H, Kita A, Ochiai Y, Katayama M, Shibata Y, Miki K, Noguchi T, Itoh S, Ikeuchi M. Fate determination of the flavin photoreceptions in the cyanobacterial blue light receptor TePixD (Tll0078). Journal of Molecular Biology. 363: 10-8. PMID 16952375 DOI: 10.1016/J.Jmb.2006.08.005  1
2006 Yoshida T, Seko T, Okada O, Iwata K, Liu L, Miki K, Yohda M. Roles of conserved basic amino acid residues and activation mechanism of the hyperthermophilic aspartate racemase at high temperature. Proteins. 64: 502-12. PMID 16705641 DOI: 10.1002/Prot.21010  1
2006 Nishitani Y, Maruyama D, Nonaka T, Kita A, Fukami TA, Mio T, Yamada-Okabe H, Yamada-Okabe T, Miki K. Crystal structures of N-acetylglucosamine-phosphate mutase, a member of the alpha-D-phosphohexomutase superfamily, and its substrate and product complexes. The Journal of Biological Chemistry. 281: 19740-7. PMID 16651269 DOI: 10.1074/Jbc.M600801200  1
2006 Takata T, Shimo-Oka T, Kojima M, Miki K, Fujii N. Differential analysis of D-beta-Asp-containing proteins found in normal and infrared irradiated rabbit lens. Biochemical and Biophysical Research Communications. 344: 263-71. PMID 16630575 DOI: 10.1016/J.Bbrc.2006.03.126  0.01
2006 Nishitani Y, Maruyama D, Nonaka T, Kita A, Fukami TA, Mio T, Yamada-Okabe H, Yamada-Okabe T, Miki K. Purification, crystallization and preliminary X-ray diffraction studies of N-acetylglucosamine-phosphate mutase from Candida albicans. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 62: 419-21. PMID 16582501 DOI: 10.1107/S1744309106010177  1
2006 Hisano T, Kasuya K, Tezuka Y, Ishii N, Kobayashi T, Shiraki M, Oroudjev E, Hansma H, Iwata T, Doi Y, Saito T, Miki K. The crystal structure of polyhydroxybutyrate depolymerase from Penicillium funiculosum provides insights into the recognition and degradation of biopolyesters. Journal of Molecular Biology. 356: 993-1004. PMID 16405909 DOI: 10.1016/J.Jmb.2005.12.028  0.04
2006 Liu L, Song X, He D, Komma C, Kita A, Virbasius JV, Huang G, Bellamy HD, Miki K, Czech MP, Zhou GW. Crystal structure of the C2 domain of class II phosphatidylinositide 3-kinase C2alpha. The Journal of Biological Chemistry. 281: 4254-60. PMID 16338929 DOI: 10.1074/Jbc.M510791200  1
2006 Nishikawa K, Sugiyama A, Yamamoto T, Nagao H, Numoto N, Miki K, Fukumori Y. 1P569 Molecular dynamics study of solvent water behavior in giant hemoglobin of Oligobrachia mashikoi(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006) Seibutsu Butsuri. 46. DOI: 10.2142/Biophys.46.S289_1  0.01
2006 Sugiyama A, Yamamoto T, Nagao H, Nishikawa K, Numoto N, Miki K, Fukumori Y. 1P567 Molecular dynamics study of dynamical structure stability of giant hemoglobin from Oligobrachia mashikoi(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006) Biophysics. 46. DOI: 10.2142/Biophys.46.S288_3  0.01
2005 Miura-Ohnuma J, Nonaka T, Katoh S, Murata K, Kita A, Miki K, Katoh E. Improved expression, purification and crystallization of a putative N-acetyl-gamma-glutamyl-phosphate reductase from rice (Oryza sativa). Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 61: 1058-61. PMID 16511234 DOI: 10.1107/S1744309105035384  1
2005 Fukamizo T, Amano S, Yamaguchi K, Yoshikawa T, Katsumi T, Saito J, Suzuki M, Miki K, Nagata Y, Ando A. Bacillus circulans MH-K1 chitosanase: amino acid residues responsible for substrate binding. Journal of Biochemistry. 138: 563-9. PMID 16272568 DOI: 10.1093/Jb/Mvi156  0.01
2005 Iwasaki W, Miyatake H, Miki K. Crystal structure of the small form of glucose-inhibited division protein A from Thermus thermophilus HB8. Proteins. 61: 1121-6. PMID 16245325 DOI: 10.1002/Prot.20667  0.01
2005 Nonaka T, Kita A, Miura-Ohnuma J, Katoh E, Inagaki N, Yamazaki T, Miki K. Crystal structure of putative N-acetyl-gamma-glutamyl-phosphate reductase (AK071544) from rice (Oryza sativa). Proteins. 61: 1137-40. PMID 16240442 DOI: 10.1002/Prot.20679  1
2005 Watanabe S, Kita A, Miki K. Crystal structure of atypical cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8. Journal of Molecular Biology. 353: 1043-54. PMID 16216272 DOI: 10.1016/J.Jmb.2005.09.017  1
2005 Numoto N, Nakagawa T, Kita A, Sasayama Y, Fukumori Y, Miki K. Structure of an extracellular giant hemoglobin of the gutless beard worm Oligobrachia mashikoi. Proceedings of the National Academy of Sciences of the United States of America. 102: 14521-6. PMID 16204001 DOI: 10.1073/Pnas.0501541102  1
2005 Hirano Y, Miki K. [Bacterial photosynthetic unit: light-harvesting and reaction center complexes]. Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. 50: 1180-8. PMID 16104583  1
2005 Takata T, Shimo-Oka T, Miki K, Fujii N. Characterization of new D-beta-aspartate-containing proteins in a lens-derived cell line. Biochemical and Biophysical Research Communications. 334: 1022-31. PMID 16038880 DOI: 10.1016/J.Bbrc.2005.06.195  0.01
2005 Shomura Y, Torayama I, Suh DY, Xiang T, Kita A, Sankawa U, Miki K. Crystal structure of stilbene synthase from Arachis hypogaea. Proteins. 60: 803-6. PMID 16028220 DOI: 10.1002/Prot.20584  1
2005 Nogi T, Hirano Y, Miki K. Structural and functional studies on the tetraheme cytochrome subunit and its electron donor proteins: the possible docking mechanisms during the electron transfer reaction. Photosynthesis Research. 85: 87-99. PMID 15977061 DOI: 10.1007/S11120-004-2416-5  1
2005 Numoto N, Nakagawa T, Kita A, Sasayama Y, Fukumori Y, Miki K. Crystallization and preliminary X-ray crystallographic analysis of extracellular giant hemoglobin from pogonophoran Oligobrachia mashikoi. Biochimica Et Biophysica Acta. 1750: 173-6. PMID 15951254 DOI: 10.1016/J.Bbapap.2005.05.009  1
2005 Kim SH, Miyatake H, Ueno T, Nagao T, Miki K. Development of a novel ampholyte buffer for isoelectric focusing: electric charge-separation of protein samples for X-ray crystallography using free-flow isoelectric focusing. Acta Crystallographica. Section D, Biological Crystallography. 61: 799-802. PMID 15930643 DOI: 10.1107/S0907444905008085  0.16
2005 Miyatake H, Kim SH, Motegi I, Matsuzaki H, Kitahara H, Higuchi A, Miki K. Development of a fully automated macromolecular crystallization/observation robotic system, HTS-80. Acta Crystallographica. Section D, Biological Crystallography. 61: 658-63. PMID 15930616 DOI: 10.1107/S090744490500939X  0.24
2005 Kita A, Okajima K, Morimoto Y, Ikeuchi M, Miki K. Structure of a cyanobacterial BLUF protein, Tll0078, containing a novel FAD-binding blue light sensor domain. Journal of Molecular Biology. 349: 1-9. PMID 15876364 DOI: 10.1016/J.Jmb.2005.03.067  1
2005 Numoto N, Nakagawa T, Kita A, Sasayama Y, Fukumori Y, Miki K. 3SE53 Molecular assembly of giant hemoglobin Seibutsu Butsuri. 45. DOI: 10.2142/Biophys.45.S29_2  1
2005 Nagao H, Sugiyama A, Yamamoto T, Takamatsu Y, Fukumori Y, Numoto N, Miki K. 3P095 Simulation of giant hemoglobin of Oligobrachia mashikoi Seibutsu Butsuri. 45. DOI: 10.2142/Biophys.45.S227_3  0.04
2005 Numoto N, Nakagawa T, Kita A, Sasayama Y, Fukumori Y, Miki K. Structure of a giant hemoglobin of the gutless beard worm Oligobrachia mashikoi Acta Crystallographica Section A. 61: 239-239. DOI: 10.1107/S0108767305089804  1
2004 Iwasaki W, Miyatake H, Ebihara A, Miki K. Crystallization and preliminary X-ray crystallographic studies of the small form of glucose-inhibited division protein A from Thermus thermophilus HB8 Acta Crystallographica Section D: Biological Crystallography. 60: 515-517. PMID 14993678 DOI: 10.1107/S0907444904000721  1
2004 Pang H, Bartlam M, Zeng Q, Miyatake H, Hisano T, Miki K, Wong LL, Gao GF, Rao Z. Crystal structure of human pirin: an iron-binding nuclear protein and transcription cofactor. The Journal of Biological Chemistry. 279: 1491-8. PMID 14573596 DOI: 10.1074/Jbc.M310022200  0.2
2004 Maruyama D, Nishitani Y, Nonaka T, Kita A, Fukami TA, Sogabe S, Mio T, Yamada-Okabe H, Yamada-Okabe T, Miki K. 1P022 Crystal structure and reaction mechanism of UDP-N-acetylglucosamine pyrophosphorylase from Candida albicans Seibutsu Butsuri. 44. DOI: 10.2142/Biophys.44.S35_2  1
2004 Takeda K, Miyatake H, Park S, Kawamoto M, Kamiya N, Miki K. Multi-wavelength anomalous diffraction method for I and Xe atoms using ultra-high-energy X-rays from SPring-8 Journal of Applied Crystallography. 37: 925-933. DOI: 10.1107/S0021889804023076  1
2003 Kharel Y, Zhang YW, Fujihashi M, Miki K, Koyama T, Khare Y. Significance of highly conserved aromatic residues in Micrococcus luteus B-P 26 undecaprenyl diphosphate synthase. Journal of Biochemistry. 134: 819-26. PMID 14769870 DOI: 10.1093/Jb/Mvg207  1
2003 Mizuno N, Voordouw G, Miki K, Sarai A, Higuchi Y. Crystal structure of dissimilatory sulfite reductase D (DsrD) protein--possible interaction with B- and Z-DNA by its winged-helix motif. Structure (London, England : 1993). 11: 1133-40. PMID 12962631 DOI: 10.1016/S0969-2126(03)00156-4  1
2003 Fujihashi M, Peapus DH, Nakajima E, Yamada T, Saito JI, Kita A, Higuchi Y, Sugawara Y, Ando A, Kamiya N, Nagata Y, Miki K. X-ray crystallographic characterization and phasing of a fucose-specific lectin from Aleuria aurantia. Acta Crystallographica. Section D, Biological Crystallography. 59: 378-80. PMID 12554959 DOI: 10.1107/S0907444902022175  1
2003 Miyatake H, Kim S, Motegi I, Matsuzaki H, Kitahara H, Higuchi A, Miki K. Development of full-automated macromolecular crystallization/observation system Seibutsu Butsuri. 43. DOI: 10.2142/Biophys.43.S81_1  0.16
2003 Nonaka T, Fujihashi M, Kita A, Saeki K, Horikoshi K, Ito S, Miki K. 酸化剤耐性アルカリセリンプロテアーゼ(Kp-43プロテアーゼ)の結晶構造と酸化によるズブチリシンの失活機構 Seibutsu Butsuri. 43. DOI: 10.2142/Biophys.43.S43_3  1
2003 Miyatake H, Takeda K, Park S, Kawamoto M, Kamiya N, Miki K. MAD phasing at ultra-high energy region Seibutsu Butsuri. 43. DOI: 10.2142/Biophys.43.S2_2  1
2002 Liu L, Iwata K, Yohda M, Miki K. Structural insight into gene duplication, gene fusion and domain swapping in the evolution of PLP-independent amino acid racemases. Febs Letters. 528: 114-8. PMID 12297289 DOI: 10.1016/S0014-5793(02)03264-7  1
2002 Liu L, Nogi T, Kobayashi M, Nozawa T, Miki K. Ultrahigh-resolution structure of high-potential iron-sulfur protein from Thermochromatium tepidum. Acta Crystallographica. Section D, Biological Crystallography. 58: 1085-91. PMID 12077426 DOI: 10.1107/S0907444902006261  1
2002 Liu L, Iwata K, Kita A, Kawarabayasi Y, Yohda M, Miki K. Crystal structure of aspartate racemase from Pyrococcus horikoshii OT3 and its implications for molecular mechanism of PLP-independent racemization. Journal of Molecular Biology. 319: 479-89. PMID 12051922 DOI: 10.1016/S0022-2836(02)00296-6  1
2001 Iizuka R, Yoshida T, Maruyama T, Shomura Y, Miki K, Yohda M. Glycine at the 65th position plays an essential role in ATP-dependent protein folding by archael group II chaperonin Biochemical and Biophysical Research Communications. 289: 1118-1124. PMID 11741308 DOI: 10.1006/Bbrc.2001.6139  1
2001 Komori H, Masui R, Kuramitsu S, Yokoyama S, Shibata T, Inoue Y, Miki K. Crystal structure of thermostable DNA photolyase: Pyrimidine-dimer recognition mechanism Proceedings of the National Academy of Sciences of the United States of America. 98: 13560-13565. PMID 11707580 DOI: 10.1073/Pnas.241371398  0.04
2001 Liu L, Iwata K, Kawarabayasi Y, Kikuchi H, Kita A, Yohda M, Miki K. Crystallization and preliminary X-ray analysis of aspartate racemase from Pyrococcus horikoshii OT3. Acta Crystallographica. Section D, Biological Crystallography. 57: 1674-6. PMID 11679741 DOI: 10.1107/S0907444901012549  1
2001 Nogi T, Miki K. Structural basis of bacterial photosynthetic reaction centers. Journal of Biochemistry. 130: 319-329. PMID 11530006 DOI: 10.1093/Oxfordjournals.Jbchem.A002989  1
2001 Inaka K, Kanaya E, Kikuchi M, Miki K. Crystal structure of a mutant human lysozyme with a substituted disulfide bond. Proteins. 43: 413-419. PMID 11340658 DOI: 10.1002/Prot.1054  0.01
2001 Fathir I, Mori T, Nogi T, Kobayashi M, Miki K, Nozawa T. Structure of the H subunit of the photosynthetic reaction center from the thermophilic purple sulfur bacterium, Thermochromatium tepidum Implications for the specific binding of the lipid molecule to the membrane protein complex. Febs Journal. 268: 2652-2657. PMID 11322886 DOI: 10.1046/J.1432-1327.2001.02158.X  1
2001 Nonaka T, Fujihashi M, Kita A, Saeki K, Ito S, Miki K. Crystallization and preliminary X‐ray diffraction studies of a novel alkaline serine protease (KP‐43) from alkaliphilic Bacillus sp. strain KSM‐KP43 Acta Crystallographica Section D-Biological Crystallography. 57: 717-718. PMID 11320315 DOI: 10.1107/S0907444901002566  1
2001 Fujihashi M, Zhang Y, Higuchi Y, Li X, Koyama T, Miki K. Crystal structure of cis-prenyl chain elongating enzyme, undecaprenyl diphosphate synthase Proceedings of the National Academy of Sciences of the United States of America. 98: 4337-4342. PMID 11287651 DOI: 10.1073/Pnas.071514398  1
2001 Sogabe S, Miki K. Crystal structure of the oxidized cytochrome c(2) from Blastochloris viridis. Febs Letters. 491: 174-179. PMID 11240122 DOI: 10.1016/S0014-5793(01)02179-2  0.01
2001 Komori H, Wada C, Miki K. Structure and Function of DNA Replication Initiator Protein, RepE. Seibutsu Butsuri. 41: 235-239. DOI: 10.2142/Biophys.41.235  0.01
2000 Nogi T, Fathir I, Kobayashi M, Nozawa T, Miki K. Crystal structures of photosynthetic reaction center and high-potential iron-sulfur protein from Thermochromatium tepidum: Thermostability and electron transfer Proceedings of the National Academy of Sciences of the United States of America. 97: 13561-13566. PMID 11095707 DOI: 10.1073/Pnas.240224997  1
2000 Mizuno N, Hittel DS, Miki K, Voordouw G, Higuchi Y. Preliminary X-ray crystallographic study of DsrD protein from the sulfate-reducing bacterium Desulfovibrio vulgaris Acta Crystallographica Section D: Biological Crystallography. 56: 754-755. PMID 10818354 DOI: 10.1107/S0907444900004327  1
2000 Nogi T, Kobayashi M, Nozawa T, Miki K. Crystallization and preliminary crystallographic analysis of the high-potential iron-sulfur protein from Thermochromatium tepidum. Acta Crystallographica Section D-Biological Crystallography. 56: 656-658. PMID 10771441 DOI: 10.1107/S0907444900003127  1
2000 Uga H, Komori H, Miki K, Wada C. The iteron regions necessary for the RepE-iteron interaction in vivo in mini-F plasmids of Escherichia coli. Journal of Biochemistry. 127: 537-541. PMID 10739943 DOI: 10.1093/Oxfordjournals.Jbchem.A022638  0.01
2000 Arai M, Hamel P, Kanaya E, Inaka K, Miki K, Kikuchi OM, Kuwajima K. Effect of an alternative disulfide bond on the structure, stability, and folding of human lysozyme. Biochemistry. 39: 3472-3479. PMID 10727242 DOI: 10.1021/Bi9921945  0.01
2000 Nogi T, Fathir I, Kobayashi M, Nozawa T, Miki K. Crystal structures of photosynthetic reaction center and high-potential iron-sulfur protein from Thermochromatium tepidum Acta Crystallographica Section A. 56: 279-279. DOI: 10.1107/S0108767300025964  1
2000 Kitano K, Maeda N, Atomi H, Imanaka T, Miki K. Crystal structure of new class Rubisco from Thermococcus kodakaraensis KOD1 with pentagonal symmetry Biochemical Society Transactions. 28. DOI: 10.1042/Bst028A418C  0.01
1999 Osyczka A, Nagashima KVP, Sogabe S, Miki K, Shimada K, Matsuura K. Comparison of the binding sites for high-potential iron-sulfur protein and cytochrome c on the tetraheme cytochrome subunit bound to the bacterial photosynthetic reaction center. Biochemistry. 38: 15779-15790. PMID 10625444 DOI: 10.1021/Bi990907D  0.01
1999 Fujihashi M, Shimizu N, Zhang Y, Koyama T, Miki K. Crystallization and preliminary X-ray diffraction studies of undecaprenyl diphosphate synthase from Micrococcus luteus B-P 26. Acta Crystallographica Section D-Biological Crystallography. 55: 1606-1607. PMID 10489461 DOI: 10.1107/S0907444999008768  1
1999 Komori H, Matsunaga F, Higuchi Y, Ishiai M, Wada C, Miki K. Crystal structure of a prokaryotic replication initiator protein bound to DNA at 2.6 Å resolution The Embo Journal. 18: 4597-4607. PMID 10469640 DOI: 10.1093/Emboj/18.17.4597  0.01
1999 Kitano K, Niimura Y, Nishiyama Y, Miki K. Stimulation of Peroxidase Activity by Decamerization Related to Ionic Strength: AhpC Protein from Amphibacillus xylanus. Journal of Biochemistry. 126: 313-319. PMID 10423523 DOI: 10.1093/Oxfordjournals.Jbchem.A022451  0.04
1999 Higuchi Y, Ogata H, Miki K, Yasuoka N, Yagi T. Removal of the bridging ligand atom at the Ni-Fe active site of [NiFe] hydrogenase upon reduction with H2, as revealed by X-ray structure analysis at 1.4 A resolution. Structure. 7: 549-556. PMID 10378274 DOI: 10.1016/S0969-2126(99)80071-9  0.01
1999 Kita A, Kita S, Fujisawa I, Inaka K, Ishida T, Horiike K, Nozaki M, Miki K. An archetypical extradiol-cleaving catecholic dioxygenase: the crystal structure of catechol 2,3-dioxygenase (metapyrocatechase) from Pseudomonas putida mt-2 Structure. 7: 25-34. PMID 10368270 DOI: 10.1016/S0969-2126(99)80006-9  1
1999 Komori H, Sasai N, Matsunaga F, Wada C, Miki K. Crystallization and Preliminary X-Ray Diffraction Studies of a Replication Initiator Protein (RepE54) of the Mini-F Plasmid Complexed with Iteron DNA Journal of Biochemistry. 125: 24-26. PMID 9880791 DOI: 10.1093/Oxfordjournals.Jbchem.A022262  0.01
1999 Nogi T, Fathir I, Kobayashi M, Nozawa Y, Miki K. X-ray crystallography of photosynthetic reation center from thermophilic purple sulfur bacterium Chromatium tepidum Seibutsu Butsuri. 39. DOI: 10.2142/Biophys.39.S105_3  1
1998 Kataoka M, Yamamoto K, Shimizu S, Ohta M, Kita A, Higuchi Y, Miki K. Crystallization and preliminary X-ray diffraction study of lactonohydrolase from Fusarium oxysporum. Acta Crystallographica Section D-Biological Crystallography. 54: 1432-1434. PMID 10089529 DOI: 10.1107/S0907444998006131  1
1998 Osyczka A, Nagashima KVP, Sogabe S, Miki K, Yoshida M, Shimada K, Matsuura K. Interaction Site for Soluble Cytochromes on the Tetraheme Cytochrome Subunit Bound to the Bacterial Photosynthetic Reaction Center Mapped by Site-Directed Mutagenesis† Biochemistry. 37: 11732-11744. PMID 9718296 DOI: 10.1021/Bi980910H  0.01
1998 Kitadokoro K, Hagishita S, Sato T, Ohtani M, Miki K. Crystal Structure of Human Secretory Phospholipase A2-IIA Complex with the Potent Indolizine Inhibitor 120-1032 Journal of Biochemistry. 123: 619-623. PMID 9538252 DOI: 10.1093/Oxfordjournals.Jbchem.A021982  0.01
1997 Kita A, Kita S, Inaka K, Ishida T, Horiike K, Nozaki M, Miki K. Crystallization and Preliminary X-Ray Diffraction Studies of Expressed Pseudomonas putida Catechol 2,3-Dioxygenase Journal of Biochemistry. 122: 201-204. PMID 9276689 DOI: 10.1093/Oxfordjournals.Jbchem.A021729  1
1996 Kataoka M, Yamamoto K, Shimizu S, Kita K, Hashimoto T, Yanase H, Kita A, Miki K. Crystallization and preliminary X-ray diffraction study of aldehyde reductase from a red yeast, Sporobolomyces salmonicolor. Acta Crystallographica Section D-Biological Crystallography. 52: 405-406. PMID 15299712 DOI: 10.1107/S0907444995011012  1
1996 Nishida H, Miki K. Electrostatic properties deduced from refined structures of NADH-cytochrome b5 reductase and the other flavin-dependent reductases: pyridine nucleotide-binding and interaction with an electron-transfer partner. Proteins. 26: 32-41. PMID 8880927 DOI: 10.1002/(Sici)1097-0134(199609)26:1<32::Aid-Prot3>3.0.Co;2-I  0.01
1996 Kawahara Y, Kato S, Kanada T, Murai T, Miki K. Preparation of bis(phosphine)bis(selenocarboxylato)-nickel(II), -palladium(II) and -platinum(II) complexes and their crystal structure analysis Journal of the Chemical Society-Dalton Transactions. 79-85. DOI: 10.1039/Dt9960000079  0.01
1995 Saito J-, Nagata Y, Ando A, Kita A, Miki K. Crystallization and preliminary X-ray crystallographic analysis of chitosanase from Bacillus circulans MH-K1. Acta Crystallographica Section D-Biological Crystallography. 51: 856-857. PMID 15299827 DOI: 10.1107/S090744499500268X  1
1995 Inaka K, Miki K, Kikuchi M, Taniyama Y, Matsushima M. Structure of a glutathionylated human lysozyme: a folding intermediate mimic in the formation of a disulfide bond. Acta Crystallographica Section D-Biological Crystallography. 51: 619-625. PMID 15299791 DOI: 10.1107/S0907444994013478  0.01
1995 Nishida H, Inaka K, Yamanaka M, Kaida S, Kobayashi K, Miki K. Crystal Structure Of Nadh-Cytochrome B5 Reductase From Pig Liver At 2.4 A Resolution Biochemistry. 34: 2763-2767. PMID 7893687 DOI: 10.1021/Bi00009A004  0.01
1995 Nishida H, Inaka K, Miki K. Specific arrangement of three amino acid residues for flavin-binding barrel structures in NADH-cytochrome b5 reductase and the other flavin-dependent reductases Febs Letters. 361: 97-100. PMID 7890048 DOI: 10.1016/0014-5793(95)00161-2  0.01
1995 Sogabe S, Miki K. Refined crystal structure of ferrocytochrome c2 from Rhodopseudomonas viridis at 1.6 A resolution. Journal of Molecular Biology. 252: 235-247. PMID 7674304 DOI: 10.1006/Jmbi.1995.0491  0.01
1995 Kita A, Kasai S, Miki K. Crystal Structure Determination of a Flavoprotein FP390 from a Luminescent Bacterium, Photobacterium phosphoreum Journal of Biochemistry. 117: 575-578. PMID 7629024 DOI: 10.1093/Oxfordjournals.Jbchem.A124746  1
1993 Briozzo P, Inaka K, Minami Y, Otani T, Miki K. Crystallization and Preliminary X-ray Diffraction Studies of C-1027-AG, the Apoprotein of the Macromolecular Antitumor Antibiotic C-1027 from Streptomyces globisporus Acta Crystallographica Section D-Biological Crystallography. 49: 372-374. PMID 15299511 DOI: 10.1107/S0907444993002719  0.01
1993 Sada K, Kondo T, Miyata M, Tamada T, Miki K. A novel molecular channel with a hydrogen bond ‘hook’; inclusion phenomena of cholanamide and the crystal structure of a 1:1 complex of cholanamide and 1,4-dioxane Journal of the Chemical Society, Chemical Communications. 753-755. DOI: 10.1039/C39930000753  0.01
1991 Kita A, Kasai N, Kasai S, Nakaya T, Miki K. Crystallization and preliminary X-ray diffraction studies of a flavoprotein, FP390, from a luminescent bacterium, Photobacterium phosphoreum Journal of Biochemistry. 110: 748-750. PMID 1783606 DOI: 10.1093/Oxfordjournals.Jbchem.A123652  1
1991 Miki K, Kasai N, Shibakami M, Takemoto K, Miyata M. New chiral recognition ability of a steroidal bile acid; direct evidence for efficient optical resolution of racemic lactones by cholic acid inclusion crystals Journal of the Chemical Society, Chemical Communications. 1757-1759. DOI: 10.1039/C39910001757  0.01
1987 Miyata M, Goonewardena W, Shibakami M, Takemoto K, Masui A, Miki K, Kasai N. Inclusion compounds of methyl esters of cholic and deoxycholic acids; structure of a 1:1 complex between methyl cholate and methanol Journal of the Chemical Society, Chemical Communications. 1140-1141. DOI: 10.1039/C39870001140  0.01
1987 Miki K, Kasai N, Tsutsumi H, Miyata M, Takemoto K. Structure of a 2 : 1 complex between deoxycholic acid and ferrocene Journal of the Chemical Society, Chemical Communications. 545-546. DOI: 10.1039/C39870000545  0.01
1986 Miki K, Yasuaki, Yukawa M, Owatari A, Hato Y, Harada S, Kai Y, Kasai N, Hata Y, Tanaka N, Kakudo M, Katsube Y, Kawabe K, Yoshtoa Zi, Ogoshi H. Crystal structures of modified myoglobins. I. Heme orientation and structural changes around heme in myoglobins reconstituted with isopemptoheme, pemptoheme, 2-ethyldeuteroheme, and 4-ethyldeuteroheme Journal of Biochemistry. 100: 269-276. PMID 3782051 DOI: 10.1093/Oxfordjournals.Jbchem.A121712  1
1986 Sato M, Nagae S, Ohmae K, Nakaya J, Miki K, Kasai N. Preparation and crystal structure of an imidazolate-bridged polynuclear complex [{Cu(im)(dien)}n][CIO4]n(dien = diethylenetriamine), and its properties in dimethyl sulphoxide solution Journal of the Chemical Society-Dalton Transactions. 1949-1953. DOI: 10.1039/Dt9860001949  0.04
1985 Deisenhofer J, Epp O, Miki K, Huber R, Michel H. Structure of the protein subunits in the photosynthetic reaction centre of Rhodopseudomonas viridis at 3Å resolution. Nature. 318: 618-24. PMID 22439175 DOI: 10.1038/318618A0  1
1984 Deisenhofer J, Epp O, Miki K, Huber R, Michel H. X-ray structure analysis of a membrane protein complex. Electron density map at 3 A resolution and a model of the chromophores of the photosynthetic reaction center from Rhodopseudomonas viridis. Journal of Molecular Biology. 180: 385-98. PMID 6392571 DOI: 10.1016/S0022-2836(84)80011-X  1
1984 Miki K, Yamatoya K, Kasai N, Kurosawa H, Emoto M, Urabe A. Unprecedented higher stability of E-than Z-olefin complexes of platinum(II). Molecular structures of the η3-methally(triphenylphosphine)(Z-and E-but-2-ene)-platinum(II) cation Journal of the Chemical Society, Chemical Communications. 1520-1522. DOI: 10.1039/C39840001520  0.04
1982 Miki K, Taniguchi H, Kai Y, Kasai N, Nishiwaki K, Wada M. X-Ray crystal structure of the cationic cyclic alkyl(alkoxy)carbene complex of nickel(II), trans-[Ni(C6Cl5)(PMe3)2(CCH2CH2CH2O)]BF4 and the corresponding alkoxy vinyl complex, trans-[Ni(C6Cl5)-(PMe3)2(CCHCH2CH2O)]; evidence for strong π-bonding in the nickel–carbene bond Journal of the Chemical Society, Chemical Communications. 1178-1180. DOI: 10.1039/C39820001178  0.04
1982 Kai Y, Kanehisa N, Miki K, Kasai N, Mashima K, Nagasuna K, Yasuda H, Nakamura A. X-Ray evidence for a mononuclear s-trans-η4-1,3-diene complex; molecular structure of Zr(η5-C5H5)2(s-trans-PhCHCH–CHCHPh) Journal of the Chemical Society, Chemical Communications. 191-192. DOI: 10.1039/C39820000191  0.01
1979 Murahashi S, Kitani Y, Hosokawa T, Miki K, Kasai N. Synthesis and structure of α-diazomethyl palladium σ-complexes; X-ray crystal structure of chloro[diazo(ethoxycarbonyl)methyl]bistriphenylphosphinepalladium Journal of the Chemical Society, Chemical Communications. 450-451. DOI: 10.1039/C39790000450  0.01
Show low-probability matches.