| Year |
Citation |
Score |
| 2019 |
Agha G, Mendelson MM, Ward-Caviness CK, Joehanes R, Huan T, Gondalia R, Salfati E, Brody JA, Fiorito G, Bressler J, Chen BH, Ligthart S, Guarrera S, Colicino E, Just AC, ... ... Feinberg AP, et al. Blood Leukocyte DNA Methylation Predicts Risk of Future Myocardial Infarction and Coronary Heart Disease. Circulation. 140: 645-657. PMID 31424985 DOI: 10.1161/CIRCULATIONAHA.118.039357 |
0.52 |
|
| 2019 |
Wulfridge P, Langmead B, Feinberg AP, Hansen KD. Analyzing whole genome bisulfite sequencing data from highly divergent genotypes. Nucleic Acids Research. PMID 31392989 DOI: 10.1093/nar/gkz674 |
0.52 |
|
| 2019 |
Chan RF, Shabalin AA, Montano C, Hannon E, Hultman CM, Fallin MD, Feinberg AP, Mill J, van den Oord EJCG, Aberg KA. Independent Methylome-Wide Association Studies of Schizophrenia Detect Consistent Case-Control Differences. Schizophrenia Bulletin. PMID 31165892 DOI: 10.1093/schbul/sbz056 |
0.52 |
|
| 2019 |
Küpers LK, Monnereau C, Sharp GC, Yousefi P, Salas LA, Ghantous A, Page CM, Reese SE, Wilcox AJ, Czamara D, Starling AP, Novoloaca A, Lent S, Roy R, Hoyo C, ... ... Feinberg AP, et al. Meta-analysis of epigenome-wide association studies in neonates reveals widespread differential DNA methylation associated with birthweight. Nature Communications. 10: 1893. PMID 31015461 DOI: 10.1038/s41467-019-09671-3 |
0.52 |
|
| 2019 |
Ladd-Acosta C, Feinberg JI, Brown SC, Lurmann FW, Croen LA, Hertz-Picciotto I, Newschaffer CJ, Feinberg AP, Fallin MD, Volk HE. Epigenetic marks of prenatal air pollution exposure found in multiple tissues relevant for child health. Environment International. 126: 363-376. PMID 30826615 DOI: 10.1016/j.envint.2019.02.028 |
0.8 |
|
| 2019 |
Rizzardi LF, Hickey PF, Rodriguez DiBlasi V, Tryggvadóttir R, Callahan CM, Idrizi A, Hansen KD, Feinberg AP. Neuronal brain-region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability. Nature Neuroscience. PMID 30643296 DOI: 10.1038/s41593-018-0297-8 |
0.52 |
|
| 2018 |
Vanaja KG, Timp W, Feinberg AP, Levchenko A. A Loss of Epigenetic Control Can Promote Cell Death through Reversing the Balance of Pathways in a Signaling Network. Molecular Cell. PMID 30244832 DOI: 10.1016/j.molcel.2018.08.025 |
0.36 |
|
| 2018 |
Andrews SV, Sheppard B, Windham GC, Schieve LA, Schendel DE, Croen LA, Chopra P, Alisch RS, Newschaffer CJ, Warren ST, Feinberg AP, Fallin MD, Ladd-Acosta C. Case-control meta-analysis of blood DNA methylation and autism spectrum disorder. Molecular Autism. 9: 40. PMID 29988321 DOI: 10.1186/s13229-018-0224-6 |
0.8 |
|
| 2018 |
Wilton R, Li X, Feinberg AP, Szalay AS. Arioc: GPU-accelerated alignment of short bisulfite-treated reads. Bioinformatics (Oxford, England). PMID 29554207 DOI: 10.1093/bioinformatics/bty167 |
0.48 |
|
| 2017 |
Barrington WT, Wulfridge P, Wells AE, Rojas CM, Howe SYF, Perry A, Hua K, Pellizzon MA, Hansen KD, Voy BH, Bennett BJ, Pomp D, Feinberg AP, Threadgill DW. Improving Metabolic Health Through Precision Dietetics in Mice. Genetics. PMID 29158425 DOI: 10.1534/genetics.117.300536 |
0.52 |
|
| 2017 |
Andrews SV, Ellis SE, Bakulski KM, Sheppard B, Croen LA, Hertz-Picciotto I, Newschaffer CJ, Feinberg AP, Arking DE, Ladd-Acosta C, Fallin MD. Cross-tissue integration of genetic and epigenetic data offers insight into autism spectrum disorder. Nature Communications. 8: 1011. PMID 29066808 DOI: 10.1038/s41467-017-00868-y |
0.8 |
|
| 2017 |
McDonald OG, Li X, Saunders T, Tryggvadottir R, Mentch SJ, Warmoes MO, Word AE, Carrer A, Salz TH, Natsume S, Stauffer KM, Makohon-Moore A, Zhong Y, Wu H, Wellen KE, ... ... Feinberg AP, et al. Epigenomic reprogramming during pancreatic cancer progression links anabolic glucose metabolism to distant metastasis. Nature Genetics. PMID 28092686 DOI: 10.1038/ng.3753 |
0.48 |
|
| 2016 |
Andrews SV, Ladd-Acosta C, Feinberg AP, Hansen KD, Fallin MD. "Gap hunting" to characterize clustered probe signals in Illumina methylation array data. Epigenetics & Chromatin. 9: 56. PMID 27980682 DOI: 10.1186/s13072-016-0107-z |
0.8 |
|
| 2016 |
Gomez-Cabrero D, Almgren M, Sjöholm LK, Hensvold AH, Ringh MV, Tryggvadottir R, Kere J, Scheynius A, Acevedo N, Reinius L, Taub MA, Montano C, Aryee MJ, Feinberg JI, Feinberg AP, et al. High-specificity bioinformatics framework for epigenomic profiling of discordant twins reveals specific and shared markers for ACPA and ACPA-positive rheumatoid arthritis. Genome Medicine. 8: 124. PMID 27876072 DOI: 10.1186/s13073-016-0374-0 |
0.32 |
|
| 2016 |
Li X, Liu Y, Salz T, Hansen KD, Feinberg AP. Whole genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver. Genome Research. PMID 27737935 DOI: 10.1101/gr.211854.116 |
0.32 |
|
| 2016 |
Montano C, Taub MA, Jaffe A, Briem E, Feinberg JI, Trygvadottir R, Idrizi A, Runarsson A, Berndsen B, Gur RC, Moore TM, Perry RT, Fugman D, Sabunciyan S, Yolken RH, ... ... Feinberg AP, et al. Association of DNA Methylation Differences With Schizophrenia in an Epigenome-Wide Association Study. Jama Psychiatry. PMID 27074206 DOI: 10.1001/jamapsychiatry.2016.0144 |
0.8 |
|
| 2016 |
Joubert BR, Felix JF, Yousefi P, Bakulski KM, Just AC, Breton C, Reese SE, Markunas CA, Richmond RC, Xu CJ, Küpers LK, Oh SS, Hoyo C, Gruzieva O, Söderhäll C, ... ... Feinberg AP, et al. DNA Methylation in Newborns and Maternal Smoking in Pregnancy: Genome-wide Consortium Meta-analysis. American Journal of Human Genetics. PMID 27040690 DOI: 10.1016/j.ajhg.2016.02.019 |
0.8 |
|
| 2016 |
Bakulski KM, Feinberg JI, Andrews SV, Yang J, Brown S, McKenney S, Witter F, Walston J, Feinberg AP, Fallin MD. DNA methylation of cord blood cell types: Applications for mixed cell birth studies. Epigenetics. 0. PMID 27019159 DOI: 10.1080/15592294.2016.1161875 |
0.8 |
|
| 2015 |
Vandiver AR, Idrizi A, Rizzardi L, Feinberg AP, Hansen KD. DNA methylation is stable during replication and cell cycle arrest. Scientific Reports. 5: 17911. PMID 26648411 DOI: 10.1038/srep17911 |
0.8 |
|
| 2015 |
Ladd-Acosta C, Shu C, Lee BK, Gidaya N, Singer A, Schieve LA, Schendel DE, Jones N, Daniels JL, Windham GC, Newschaffer CJ, Croen LA, Feinberg AP, Daniele Fallin M. Presence of an epigenetic signature of prenatal cigarette smoke exposure in childhood. Environmental Research. 144: 139-148. PMID 26610292 DOI: 10.1016/j.envres.2015.11.014 |
0.8 |
|
| 2015 |
Jung N, Dai B, Gentles AJ, Majeti R, Feinberg AP. An LSC epigenetic signature is largely mutation independent and implicates the HOXA cluster in AML pathogenesis. Nature Communications. 6: 8489. PMID 26444494 DOI: 10.1038/ncomms9489 |
0.8 |
|
| 2015 |
Feinberg AP, Fallin MD. Epigenetics at the Crossroads of Genes and the Environment. Jama. 314: 1129-30. PMID 26372577 DOI: 10.1001/jama.2015.10414 |
0.8 |
|
| 2015 |
Bakulski KM, Lee H, Feinberg JI, Wells EM, Brown S, Herbstman JB, Witter FR, Halden RU, Caldwell K, Mortensen ME, Jaffe AE, Moye J, Caulfield LE, Pan Y, Goldman LR, ... Feinberg AP, et al. Prenatal mercury concentration is associated with changes in DNA methylation at TCEANC2 in newborns. International Journal of Epidemiology. PMID 25906783 DOI: 10.1093/ije/dyv032 |
0.8 |
|
| 2015 |
Vandiver AR, Irizarry RA, Hansen KD, Garza LA, Runarsson A, Li X, Chien AL, Wang TS, Leung SG, Kang S, Feinberg AP. Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin. Genome Biology. 16: 80. PMID 25886480 DOI: 10.1186/s13059-015-0644-y |
0.8 |
|
| 2015 |
Feinberg JI, Bakulski KM, Jaffe AE, Tryggvadottir R, Brown SC, Goldman LR, Croen LA, Hertz-Picciotto I, Newschaffer CJ, Daniele Fallin M, Feinberg AP. Paternal sperm DNA methylation associated with early signs of autism risk in an autism-enriched cohort. International Journal of Epidemiology. 44: 1199-210. PMID 25878217 DOI: 10.1093/ije/dyv028 |
0.8 |
|
| 2015 |
Marioni RE, Shah S, McRae AF, Chen BH, Colicino E, Harris SE, Gibson J, Henders AK, Redmond P, Cox SR, Pattie A, Corley J, Murphy L, Martin NG, Montgomery GW, ... Feinberg AP, et al. DNA methylation age of blood predicts all-cause mortality in later life. Genome Biology. 16: 25. PMID 25633388 DOI: 10.1186/s13059-015-0584-6 |
0.8 |
|
| 2015 |
Multhaup ML, Seldin MM, Jaffe AE, Lei X, Kirchner H, Mondal P, Li Y, Rodriguez V, Drong A, Hussain M, Lindgren C, McCarthy M, Näslund E, Zierath JR, Wong GW, ... Feinberg AP, et al. Mouse-human experimental epigenetic analysis unmasks dietary targets and genetic liability for diabetic phenotypes. Cell Metabolism. 21: 138-49. PMID 25565211 DOI: 10.1016/j.cmet.2014.12.014 |
0.8 |
|
| 2015 |
Schlaeger TM, Daheron L, Brickler TR, Entwisle S, Chan K, Cianci A, DeVine A, Ettenger A, Fitzgerald K, Godfrey M, Gupta D, McPherson J, Malwadkar P, Gupta M, Bell B, ... ... Feinberg AP, et al. A comparison of non-integrating reprogramming methods. Nature Biotechnology. 33: 58-63. PMID 25437882 DOI: 10.1038/nbt.3070 |
0.8 |
|
| 2015 |
Sinha S, Thomas D, Yu L, Gentles AJ, Jung N, Corces-Zimmerman MR, Chan SM, Reinisch A, Feinberg AP, Dill DL, Majeti R. Mutant WT1 is associated with DNA hypermethylation of PRC2 targets in AML and responds to EZH2 inhibition. Blood. 125: 316-26. PMID 25398938 DOI: 10.1182/blood-2014-03-566018 |
0.8 |
|
| 2014 |
Feinberg AP. The nucleolus gets the silent treatment. Cell Stem Cell. 15: 675-6. PMID 25479743 DOI: 10.1016/j.stem.2014.11.017 |
0.8 |
|
| 2014 |
Timp W, Bravo HC, McDonald OG, Goggins M, Umbricht C, Zeiger M, Feinberg AP, Irizarry RA. Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors. Genome Medicine. 6: 61. PMID 25191524 DOI: 10.1186/s13073-014-0061-y |
0.8 |
|
| 2014 |
Feinberg A. DNA methylation in cancer: three decades of discovery. Genome Medicine. 6: 36. PMID 25031622 DOI: 10.1186/gm553 |
0.8 |
|
| 2014 |
Prusevich P, Kalin JH, Ming SA, Basso M, Givens J, Li X, Hu J, Taylor MS, Cieniewicz AM, Hsiao PY, Huang R, Roberson H, Adejola N, Avery LB, Casero RA, ... ... Feinberg AP, et al. A selective phenelzine analogue inhibitor of histone demethylase LSD1. Acs Chemical Biology. 9: 1284-93. PMID 24707965 DOI: 10.1021/cb500018s |
0.8 |
|
| 2014 |
Liu Y, Li X, Aryee MJ, Ekström TJ, Padyukov L, Klareskog L, Vandiver A, Moore AZ, Tanaka T, Ferrucci L, Fallin MD, Feinberg AP. GeMes, clusters of DNA methylation under genetic control, can inform genetic and epigenetic analysis of disease. American Journal of Human Genetics. 94: 485-95. PMID 24656863 DOI: 10.1016/j.ajhg.2014.02.011 |
0.8 |
|
| 2014 |
Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA. Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays. Bioinformatics (Oxford, England). 30: 1363-9. PMID 24478339 DOI: 10.1093/bioinformatics/btu049 |
0.8 |
|
| 2014 |
Hansen KD, Sabunciyan S, Langmead B, Nagy N, Curley R, Klein G, Klein E, Salamon D, Feinberg AP. Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization. Genome Research. 24: 177-84. PMID 24068705 DOI: 10.1101/gr.157743.113 |
0.8 |
|
| 2014 |
Ladd-Acosta C, Hansen KD, Briem E, Fallin MD, Kaufmann WE, Feinberg AP. Common DNA methylation alterations in multiple brain regions in autism. Molecular Psychiatry. 19: 862-71. PMID 23999529 DOI: 10.1038/mp.2013.114 |
0.8 |
|
| 2013 |
Montaño CM, Irizarry RA, Kaufmann WE, Talbot K, Gur RE, Feinberg AP, Taub MA. Measuring cell-type specific differential methylation in human brain tissue. Genome Biology. 14: R94. PMID 24000956 DOI: 10.1186/gb-2013-14-8-r94 |
0.8 |
|
| 2013 |
Feinberg AP. The epigenetic basis of common human disease. Transactions of the American Clinical and Climatological Association. 124: 84-93. PMID 23874013 |
0.8 |
|
| 2013 |
Timp W, Feinberg AP. Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host. Nature Reviews. Cancer. 13: 497-510. PMID 23760024 DOI: 10.1038/nrc3486 |
0.8 |
|
| 2013 |
Feinberg AP. A third-generation method reveals cell lineage ancestry. Nature Methods. 10: 117-8. PMID 23361091 DOI: 10.1038/nmeth.2338 |
0.8 |
|
| 2013 |
Liu Y, Aryee MJ, Padyukov L, Fallin MD, Hesselberg E, Runarsson A, Reinius L, Acevedo N, Taub M, Ronninger M, Shchetynsky K, Scheynius A, Kere J, Alfredsson L, Klareskog L, ... ... Feinberg AP, et al. Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis. Nature Biotechnology. 31: 142-7. PMID 23334450 DOI: 10.1038/nbt.2487 |
0.8 |
|
| 2013 |
Reddy KL, Feinberg AP. Higher order chromatin organization in cancer. Seminars in Cancer Biology. 23: 109-15. PMID 23266653 DOI: 10.1016/j.semcancer.2012.12.001 |
0.8 |
|
| 2012 |
Wen B, Wu H, Loh YH, Briem E, Daley GQ, Feinberg AP. Euchromatin islands in large heterochromatin domains are enriched for CTCF binding and differentially DNA-methylated regions. Bmc Genomics. 13: 566. PMID 23102236 DOI: 10.1186/1471-2164-13-566 |
0.8 |
|
| 2012 |
Herb BR, Wolschin F, Hansen KD, Aryee MJ, Langmead B, Irizarry R, Amdam GV, Feinberg AP. Reversible switching between epigenetic states in honeybee behavioral subcastes. Nature Neuroscience. 15: 1371-3. PMID 22983211 DOI: 10.1038/nn.3218 |
0.8 |
|
| 2012 |
Sabunciyan S, Aryee MJ, Irizarry RA, Rongione M, Webster MJ, Kaufman WE, Murakami P, Lessard A, Yolken RH, Feinberg AP, Potash JB. Genome-wide DNA methylation scan in major depressive disorder. Plos One. 7: e34451. PMID 22511943 DOI: 10.1371/journal.pone.0034451 |
0.8 |
|
| 2012 |
Pujadas E, Feinberg AP. Regulated noise in the epigenetic landscape of development and disease. Cell. 148: 1123-31. PMID 22424224 DOI: 10.1016/j.cell.2012.02.045 |
0.8 |
|
| 2012 |
Jaffe AE, Murakami P, Lee H, Leek JT, Fallin MD, Feinberg AP, Irizarry RA. Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies. International Journal of Epidemiology. 41: 200-9. PMID 22422453 DOI: 10.1093/ije/dyr238 |
0.8 |
|
| 2012 |
Lee H, Jaffe AE, Feinberg JI, Tryggvadottir R, Brown S, Montano C, Aryee MJ, Irizarry RA, Herbstman J, Witter FR, Goldman LR, Feinberg AP, Fallin MD. DNA methylation shows genome-wide association of NFIX, RAPGEF2 and MSRB3 with gestational age at birth. International Journal of Epidemiology. 41: 188-99. PMID 22422452 DOI: 10.1093/ije/dyr237 |
0.8 |
|
| 2012 |
Vanaja KG, Feinberg AP, Levchenko A. Stem cell differentiation as a renewal-reward process: predictions and validation in the colonic crypt. Advances in Experimental Medicine and Biology. 736: 199-209. PMID 22161330 DOI: 10.1007/978-1-4419-7210-1_11 |
0.8 |
|
| 2012 |
Jaffe AE, Feinberg AP, Irizarry RA, Leek JT. Significance analysis and statistical dissection of variably methylated regions. Biostatistics (Oxford, England). 13: 166-78. PMID 21685414 DOI: 10.1093/biostatistics/kxr013 |
0.8 |
|
| 2011 |
Kim K, Zhao R, Doi A, Ng K, Unternaehrer J, Cahan P, Huo H, Loh YH, Aryee MJ, Lensch MW, Li H, Collins JJ, Feinberg AP, Daley GQ. Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells. Nature Biotechnology. 29: 1117-9. PMID 22119740 DOI: 10.1038/nbt.2052 |
0.8 |
|
| 2011 |
Lee RS, Tamashiro KL, Aryee MJ, Murakami P, Seifuddin F, Herb B, Huo Y, Rongione M, Feinberg AP, Moran TH, Potash JB. Adaptation of the CHARM DNA methylation platform for the rat genome reveals novel brain region-specific differences. Epigenetics : Official Journal of the Dna Methylation Society. 6: 1378-90. PMID 22048247 DOI: 10.4161/epi.6.11.18072 |
0.8 |
|
| 2011 |
Onyango P, Feinberg AP. A nucleolar protein, H19 opposite tumor suppressor (HOTS), is a tumor growth inhibitor encoded by a human imprinted H19 antisense transcript. Proceedings of the National Academy of Sciences of the United States of America. 108: 16759-64. PMID 21940503 DOI: 10.1073/pnas.1110904108 |
0.8 |
|
| 2011 |
McDonald OG, Wu H, Timp W, Doi A, Feinberg AP. Genome-scale epigenetic reprogramming during epithelial-to-mesenchymal transition. Nature Structural & Molecular Biology. 18: 867-74. PMID 21725293 DOI: 10.1038/nsmb.2084 |
0.8 |
|
| 2011 |
Hansen KD, Timp W, Bravo HC, Sabunciyan S, Langmead B, McDonald OG, Wen B, Wu H, Liu Y, Diep D, Briem E, Zhang K, Irizarry RA, Feinberg AP. Increased methylation variation in epigenetic domains across cancer types. Nature Genetics. 43: 768-75. PMID 21706001 DOI: 10.1038/ng.865 |
0.8 |
|
| 2011 |
Aryee MJ, Wu Z, Ladd-Acosta C, Herb B, Feinberg AP, Yegnasubramanian S, Irizarry RA. Accurate genome-scale percentage DNA methylation estimates from microarray data. Biostatistics (Oxford, England). 12: 197-210. PMID 20858772 DOI: 10.1093/biostatistics/kxq055 |
0.8 |
|
| 2010 |
Feinberg AP. Epigenomics reveals a functional genome anatomy and a new approach to common disease. Nature Biotechnology. 28: 1049-52. PMID 20944596 DOI: 10.1038/nbt1010-1049 |
0.8 |
|
| 2010 |
Feinberg AP, Irizarry RA, Fradin D, Aryee MJ, Murakami P, Aspelund T, Eiriksdottir G, Harris TB, Launer L, Gudnason V, Fallin MD. Personalized epigenomic signatures that are stable over time and covary with body mass index. Science Translational Medicine. 2: 49ra67. PMID 20844285 DOI: 10.1126/scitranslmed.3001262 |
0.8 |
|
| 2010 |
Fradin D, Cheslack-Postava K, Ladd-Acosta C, Newschaffer C, Chakravarti A, Arking DE, Feinberg A, Fallin MD. Parent-of-origin effects in autism identified through genome-wide linkage analysis of 16,000 SNPs. Plos One. 5. PMID 20824079 DOI: 10.1371/journal.pone.0012513 |
0.8 |
|
| 2010 |
Ji H, Ehrlich LI, Seita J, Murakami P, Doi A, Lindau P, Lee H, Aryee MJ, Irizarry RA, Kim K, Rossi DJ, Inlay MA, Serwold T, Karsunky H, Ho L, ... ... Feinberg AP, et al. Comprehensive methylome map of lineage commitment from haematopoietic progenitors. Nature. 467: 338-42. PMID 20720541 DOI: 10.1038/nature09367 |
0.8 |
|
| 2010 |
Kim K, Doi A, Wen B, Ng K, Zhao R, Cahan P, Kim J, Aryee MJ, Ji H, Ehrlich LI, Yabuuchi A, Takeuchi A, Cunniff KC, Hongguang H, McKinney-Freeman S, ... ... Feinberg AP, et al. Epigenetic memory in induced pluripotent stem cells. Nature. 467: 285-90. PMID 20644535 DOI: 10.1038/nature09342 |
0.8 |
|
| 2010 |
Lennerz JK, Timmerman RJ, Grange DK, DeBaun MR, Feinberg AP, Zehnbauer BA. Addition of H19 'loss of methylation testing' for Beckwith-Wiedemann syndrome (BWS) increases the diagnostic yield. The Journal of Molecular Diagnostics : Jmd. 12: 576-88. PMID 20616360 DOI: 10.2353/jmoldx.2010.100005 |
0.8 |
|
| 2010 |
Ladd-Acosta C, Aryee MJ, Ordway JM, Feinberg AP. Comprehensive high-throughput arrays for relative methylation (CHARM). Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. Unit 20.1.1-19. PMID 20373514 DOI: 10.1002/0471142905.hg2001s65 |
0.8 |
|
| 2010 |
Wu H, Caffo B, Jaffee HA, Irizarry RA, Feinberg AP. Redefining CpG islands using hidden Markov models. Biostatistics (Oxford, England). 11: 499-514. PMID 20212320 DOI: 10.1093/biostatistics/kxq005 |
0.8 |
|
| 2010 |
Feinberg AP, Irizarry RA. Evolution in health and medicine Sackler colloquium: Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease. Proceedings of the National Academy of Sciences of the United States of America. 107: 1757-64. PMID 20080672 DOI: 10.1073/pnas.0906183107 |
0.8 |
|
| 2010 |
Feinberg AP. Genome-scale approaches to the epigenetics of common human disease. Virchows Archiv : An International Journal of Pathology. 456: 13-21. PMID 19844740 DOI: 10.1007/s00428-009-0847-2 |
0.8 |
|
| 2009 |
Feinberg A. Interview: Professor Andrew Feinberg speaks to Epigenomics. Epigenomics. 1: 25-7. PMID 22122634 DOI: 10.2217/epi.09.8 |
0.8 |
|
| 2009 |
Doi A, Park IH, Wen B, Murakami P, Aryee MJ, Irizarry R, Herb B, Ladd-Acosta C, Rho J, Loewer S, Miller J, Schlaeger T, Daley GQ, Feinberg AP. Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts. Nature Genetics. 41: 1350-3. PMID 19881528 DOI: 10.1038/ng.471 |
0.8 |
|
| 2009 |
Irizarry RA, Wu H, Feinberg AP. A species-generalized probabilistic model-based definition of CpG islands. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 20: 674-80. PMID 19777308 DOI: 10.1007/s00335-009-9222-5 |
0.8 |
|
| 2009 |
Cruz-Correa M, Zhao R, Oviedo M, Bernabe RD, Lacourt M, Cardona A, Lopez-Enriquez R, Wexner S, Cuffari C, Hylind L, Platz E, Cui H, Feinberg AP, Giardiello FM. Temporal stability and age-related prevalence of loss of imprinting of the insulin-like growth factor-2 gene. Epigenetics : Official Journal of the Dna Methylation Society. 4: 114-8. PMID 19242102 DOI: 10.4161/epi.4.2.7954 |
0.8 |
|
| 2009 |
Timp W, Levchenko A, Feinberg AP. A new link between epigenetic progenitor lesions in cancer and the dynamics of signal transduction. Cell Cycle (Georgetown, Tex.). 8: 383-90. PMID 19177016 |
0.36 |
|
| 2009 |
Wen B, Wu H, Shinkai Y, Irizarry RA, Feinberg AP. Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells. Nature Genetics. 41: 246-50. PMID 19151716 DOI: 10.1038/ng.297 |
0.8 |
|
| 2009 |
Irizarry RA, Ladd-Acosta C, Wen B, Wu Z, Montano C, Onyango P, Cui H, Gabo K, Rongione M, Webster M, Ji H, Potash JB, Sabunciyan S, Feinberg AP. The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores. Nature Genetics. 41: 178-86. PMID 19151715 DOI: 10.1038/ng.298 |
0.8 |
|
| 2008 |
Wen B, Wu H, Bjornsson H, Green RD, Irizarry R, Feinberg AP. Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification. Genome Research. 18: 1806-13. PMID 18849526 DOI: 10.1101/gr.067587.108 |
0.8 |
|
| 2008 |
Nguyen P, Bar-Sela G, Sun L, Bisht KS, Cui H, Kohn E, Feinberg AP, Gius D. BAT3 and SET1A form a complex with CTCFL/BORIS to modulate H3K4 histone dimethylation and gene expression. Molecular and Cellular Biology. 28: 6720-9. PMID 18765639 DOI: 10.1128/MCB.00568-08 |
0.8 |
|
| 2008 |
Nguyen P, Cui H, Bisht KS, Sun L, Patel K, Lee RS, Kugoh H, Oshimura M, Feinberg AP, Gius D. CTCFL/BORIS is a methylation-independent DNA-binding protein that preferentially binds to the paternal H19 differentially methylated region. Cancer Research. 68: 5546-51. PMID 18632606 DOI: 10.1158/0008-5472.CAN-08-1005 |
0.8 |
|
| 2008 |
Bjornsson HT, Sigurdsson MI, Fallin MD, Irizarry RA, Aspelund T, Cui H, Yu W, Rongione MA, Ekström TJ, Harris TB, Launer LJ, Eiriksdottir G, Leppert MF, Sapienza C, Gudnason V, ... Feinberg AP, et al. Intra-individual change over time in DNA methylation with familial clustering. Jama. 299: 2877-83. PMID 18577732 DOI: 10.1001/jama.299.24.2877 |
0.8 |
|
| 2008 |
Sun L, Huang L, Nguyen P, Bisht KS, Bar-Sela G, Ho AS, Bradbury CM, Yu W, Cui H, Lee S, Trepel JB, Feinberg AP, Gius D. DNA methyltransferase 1 and 3B activate BAG-1 expression via recruitment of CTCFL/BORIS and modulation of promoter histone methylation. Cancer Research. 68: 2726-35. PMID 18413740 DOI: 10.1158/0008-5472.CAN-07-6654 |
0.8 |
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| 2008 |
Bjornsson HT, Albert TJ, Ladd-Acosta CM, Green RD, Rongione MA, Middle CM, Irizarry RA, Broman KW, Feinberg AP. SNP-specific array-based allele-specific expression analysis. Genome Research. 18: 771-9. PMID 18369178 DOI: 10.1101/gr.073254.107 |
0.8 |
|
| 2008 |
Irizarry RA, Ladd-Acosta C, Carvalho B, Wu H, Brandenburg SA, Jeddeloh JA, Wen B, Feinberg AP. Comprehensive high-throughput arrays for relative methylation (CHARM). Genome Research. 18: 780-90. PMID 18316654 DOI: 10.1101/gr.7301508 |
0.8 |
|
| 2008 |
Yu W, Gius D, Onyango P, Muldoon-Jacobs K, Karp J, Feinberg AP, Cui H. Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature. 451: 202-6. PMID 18185590 DOI: 10.1038/nature06468 |
0.76 |
|
| 2008 |
Potash JB, Buervenich S, Cox NJ, Zandi PP, Akula N, Steele J, Rathe JA, Avramopoulos D, Detera-Wadleigh SD, Gershon ES, DePaulo JR, Feinberg AP, McMahon FJ. Gene-based SNP mapping of a psychotic bipolar affective disorder linkage region on 22q12.3: association with HMG2L1 and TOM1. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. 147: 59-67. PMID 17671966 DOI: 10.1002/ajmg.b.30574 |
0.8 |
|
| 2007 |
Kaneda A, Wang CJ, Cheong R, Timp W, Onyango P, Wen B, Iacobuzio-Donahue CA, Ohlsson R, Andraos R, Pearson MA, Sharov AA, Longo DL, Ko MS, Levchenko A, Feinberg AP. Enhanced sensitivity to IGF-II signaling links loss of imprinting of IGF2 to increased cell proliferation and tumor risk. Proceedings of the National Academy of Sciences of the United States of America. 104: 20926-31. PMID 18087038 DOI: 10.1073/pnas.0710359105 |
0.8 |
|
| 2007 |
Ladd-Acosta C, Pevsner J, Sabunciyan S, Yolken RH, Webster MJ, Dinkins T, Callinan PA, Fan JB, Potash JB, Feinberg AP. DNA methylation signatures within the human brain. American Journal of Human Genetics. 81: 1304-15. PMID 17999367 DOI: 10.1086/524110 |
0.8 |
|
| 2007 |
Bjornsson HT, Brown LJ, Fallin MD, Rongione MA, Bibikova M, Wickham E, Fan JB, Feinberg AP. Epigenetic specificity of loss of imprinting of the IGF2 gene in Wilms tumors. Journal of the National Cancer Institute. 99: 1270-3. PMID 17686827 DOI: 10.1093/jnci/djm069 |
0.8 |
|
| 2007 |
Reinhold WC, Reimers MA, Maunakea AK, Kim S, Lababidi S, Scherf U, Shankavaram UT, Ziegler MS, Stewart C, Kouros-Mehr H, Cui H, Dolginow D, Scudiero DA, Pommier YG, Munroe DJ, ... Feinberg AP, et al. Detailed DNA methylation profiles of the E-cadherin promoter in the NCI-60 cancer cells. Molecular Cancer Therapeutics. 6: 391-403. PMID 17272646 DOI: 10.1158/1535-7163.MCT-06-0609 |
0.8 |
|
| 2007 |
Rivera MN, Kim WJ, Wells J, Driscoll DR, Brannigan BW, Han M, Kim JC, Feinberg AP, Gerald WL, Vargas SO, Chin L, Iafrate AJ, Bell DW, Haber DA. An X chromosome gene, WTX, is commonly inactivated in Wilms tumor. Science (New York, N.Y.). 315: 642-5. PMID 17204608 DOI: 10.1126/science.1137509 |
0.8 |
|
| 2007 |
Postovit LM, Costa FF, Bischof JM, Seftor EA, Wen B, Seftor RE, Feinberg AP, Soares MB, Hendrix MJ. The commonality of plasticity underlying multipotent tumor cells and embryonic stem cells. Journal of Cellular Biochemistry. 101: 908-17. PMID 17177292 DOI: 10.1002/jcb.21227 |
0.8 |
|
| 2006 |
Feinberg AP, Ohlsson R, Henikoff S. The epigenetic progenitor origin of human cancer Nature Reviews Genetics. 7: 21-33. PMID 16369569 DOI: 10.1038/nrg1748 |
0.8 |
|
| 2005 |
Niemitz EL, Feinberg AP, Brandenburg SA, Grundy PE, DeBaun MR. Children with idiopathic hemihypertrophy and beckwith-wiedemann syndrome have different constitutional epigenotypes associated with wilms tumor. American Journal of Human Genetics. 77: 887-91. PMID 16252245 DOI: 10.1086/497540 |
0.96 |
|
| 2005 |
Wangler MF, An P, Feinberg AP, Province M, Debaun MR. Inheritance pattern of Beckwith-Wiedemann syndrome is heterogeneous in 291 families with an affected proband. American Journal of Medical Genetics. Part A. 137: 16-21. PMID 16007611 DOI: 10.1002/ajmg.a.30827 |
0.8 |
|
| 2005 |
Mummert SK, Lobanenkov VA, Feinberg AP. Association of chromosome arm 16q loss with loss of imprinting of insulin-like growth factor-II in Wilms tumor. Genes, Chromosomes & Cancer. 43: 155-61. PMID 15761865 DOI: 10.1002/gcc.20176 |
1 |
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| 2005 |
Wangler MF, Chang AS, Moley KH, Feinberg AP, Debaun MR. Factors associated with preterm delivery in mothers of children with Beckwith-Wiedemann syndrome: a case cohort study from the BWS registry. American Journal of Medical Genetics. Part A. 134: 187-91. PMID 15723285 DOI: 10.1002/ajmg.a.30595 |
0.8 |
|
| 2005 |
Chang AS, Moley KH, Wangler M, Feinberg AP, Debaun MR. Association between Beckwith-Wiedemann syndrome and assisted reproductive technology: a case series of 19 patients. Fertility and Sterility. 83: 349-54. PMID 15705373 DOI: 10.1016/j.fertnstert.2004.07.964 |
0.8 |
|
| 2004 |
Gius D, Cui H, Bradbury CM, Cook J, Smart DK, Zhao S, Young L, Brandenburg SA, Hu Y, Bisht KS, Ho AS, Mattson D, Sun L, Munson PJ, Chuang EY, ... ... Feinberg AP, et al. Distinct effects on gene expression of chemical and genetic manipulation of the cancer epigenome revealed by a multimodality approach. Cancer Cell. 6: 361-71. PMID 15488759 DOI: 10.1016/j.ccr.2004.08.029 |
0.8 |
|
| 2004 |
Niemitz EL, DeBaun MR, Fallon J, Murakami K, Kugoh H, Oshimura M, Feinberg AP. Microdeletion of LIT1 in familial Beckwith-Wiedemann syndrome. American Journal of Human Genetics. 75: 844-9. PMID 15372379 DOI: 10.1086/425343 |
0.96 |
|
| 2004 |
Yu W, Ginjala V, Pant V, Chernukhin I, Whitehead J, Docquier F, Farrar D, Tavoosidana G, Mukhopadhyay R, Kanduri C, Oshimura M, Feinberg AP, Lobanenkov V, Klenova E, Ohlsson R. Poly(ADP-ribosyl)ation regulates CTCF-dependent chromatin insulation. Nature Genetics. 36: 1105-10. PMID 15361875 DOI: 10.1038/ng1426 |
0.8 |
|
| 2004 |
Bjornsson HT, Fallin MD, Feinberg AP. An integrated epigenetic and genetic approach to common human disease. Trends in Genetics : Tig. 20: 350-8. PMID 15262407 DOI: 10.1016/j.tig.2004.06.009 |
0.8 |
|
| 2004 |
Cruz-Correa M, Cui H, Giardiello FM, Powe NR, Hylind L, Robinson A, Hutcheon DF, Kafonek DR, Brandenburg S, Wu Y, He X, Feinberg AP. Loss of imprinting of insulin growth factor II gene: a potential heritable biomarker for colon neoplasia predisposition. Gastroenterology. 126: 964-70. PMID 15057734 |
0.76 |
|
| 2004 |
Niemitz EL, Feinberg AP. Epigenetics and assisted reproductive technology: a call for investigation. American Journal of Human Genetics. 74: 599-609. PMID 14991528 DOI: 10.1086/382897 |
0.96 |
|
| 2003 |
Kraggerud SM, Lee MP, Skotheim RI, Stenwig AE, Fosså SD, Feinberg AP, Lothe RA. Lack of parental origin specificity of altered alleles at 11p15 in testicular germ cell tumors. Cancer Genetics and Cytogenetics. 147: 1-8. PMID 14580764 |
0.36 |
|
| 2003 |
Cui H, Cruz-Correa M, Giardiello FM, Hutcheon DF, Kafonek DR, Brandenburg S, Wu Y, He X, Powe NR, Feinberg AP. Loss of IGF2 imprinting: a potential marker of colorectal cancer risk. Science (New York, N.Y.). 299: 1753-5. PMID 12637750 DOI: 10.1126/science.1080902 |
0.76 |
|
| 2003 |
DeBaun MR, Niemitz EL, Feinberg AP. Association of in vitro fertilization with Beckwith-Wiedemann syndrome and epigenetic alterations of LIT1 and H19. American Journal of Human Genetics. 72: 156-60. PMID 12439823 DOI: 10.1086/346031 |
0.96 |
|
| 2002 |
Cui H, Onyango P, Brandenburg S, Wu Y, Hsieh CL, Feinberg AP. Loss of imprinting in colorectal cancer linked to hypomethylation of H19 and IGF2. Cancer Research. 62: 6442-6. PMID 12438232 |
0.76 |
|
| 2002 |
Onyango P, Celic I, McCaffery JM, Boeke JD, Feinberg AP. SIRT3, a human SIR2 homologue, is an NAD-dependent deacetylase localized to mitochondria. Proceedings of the National Academy of Sciences of the United States of America. 99: 13653-8. PMID 12374852 DOI: 10.1073/pnas.222538099 |
0.8 |
|
| 2002 |
Feinberg AP, Cui H, Ohlsson R. DNA methylation and genomic imprinting: insights from cancer into epigenetic mechanisms. Seminars in Cancer Biology. 12: 389-98. PMID 12191638 |
0.76 |
|
| 2002 |
Onyango P, Jiang S, Uejima H, Shamblott MJ, Gearhart JD, Cui H, Feinberg AP. Monoallelic expression and methylation of imprinted genes in human and mouse embryonic germ cell lineages. Proceedings of the National Academy of Sciences of the United States of America. 99: 10599-604. PMID 12114541 DOI: 10.1073/pnas.152327599 |
0.8 |
|
| 2002 |
Loukinov DI, Pugacheva E, Vatolin S, Pack SD, Moon H, Chernukhin I, Mannan P, Larsson E, Kanduri C, Vostrov AA, Cui H, Niemitz EL, Rasko JE, Docquier FM, Kistler M, ... ... Feinberg AP, et al. BORIS, a novel male germ-line-specific protein associated with epigenetic reprogramming events, shares the same 11-zinc-finger domain with CTCF, the insulator protein involved in reading imprinting marks in the soma. Proceedings of the National Academy of Sciences of the United States of America. 99: 6806-11. PMID 12011441 DOI: 10.1073/pnas.092123699 |
0.96 |
|
| 2002 |
Rhee I, Bachman KE, Park BH, Jair KW, Yen RW, Schuebel KE, Cui H, Feinberg AP, Lengauer C, Kinzler KW, Baylin SB, Vogelstein B. DNMT1 and DNMT3b cooperate to silence genes in human cancer cells. Nature. 416: 552-6. PMID 11932749 DOI: 10.1038/416552a |
0.76 |
|
| 2002 |
Strichman-Almashanu LZ, Lee RS, Onyango PO, Perlman E, Flam F, Frieman MB, Feinberg AP. A genome-wide screen for normally methylated human CpG islands that can identify novel imprinted genes. Genome Research. 12: 543-54. PMID 11932239 DOI: 10.1101/gr.224102. Article published online before print in March 2002 |
0.8 |
|
| 2002 |
DeBaun MR, Niemitz EL, McNeil DE, Brandenburg SA, Lee MP, Feinberg AP. Epigenetic alterations of H19 and LIT1 distinguish patients with Beckwith-Wiedemann syndrome with cancer and birth defects. American Journal of Human Genetics. 70: 604-11. PMID 11813134 DOI: 10.1086/338934 |
0.8 |
|
| 2002 |
Filippova GN, Qi CF, Ulmer JE, Moore JM, Ward MD, Hu YJ, Loukinov DI, Pugacheva EM, Klenova EM, Grundy PE, Feinberg AP, Cleton-Jansen AM, Moerland EW, Cornelisse CJ, Suzuki H, et al. Tumor-associated zinc finger mutations in the CTCF transcription factor selectively alter tts DNA-binding specificity. Cancer Research. 62: 48-52. PMID 11782357 |
0.8 |
|
| 2001 |
Ravenel JD, Broman KW, Perlman EJ, Niemitz EL, Jayawardena TM, Bell DW, Haber DA, Uejima H, Feinberg AP. Loss of imprinting of insulin-like growth factor-II (IGF2) gene in distinguishing specific biologic subtypes of Wilms tumor. Journal of the National Cancer Institute. 93: 1698-703. PMID 11717330 |
0.8 |
|
| 2001 |
Cui H, Niemitz EL, Ravenel JD, Onyango P, Brandenburg SA, Lobanenkov VV, Feinberg AP. Loss of imprinting of insulin-like growth factor-II in Wilms' tumor commonly involves altered methylation but not mutations of CTCF or its binding site. Cancer Research. 61: 4947-50. PMID 11431321 |
0.96 |
|
| 2000 |
Lee MP, Ravenel JD, Hu RJ, Lustig LR, Tomaselli G, Berger RD, Brandenburg SA, Litzi TJ, Bunton TE, Limb C, Francis H, Gorelikow M, Gu H, Washington K, Argani P, ... ... Feinberg AP, et al. Targeted disruption of the Kvlqt1 gene causes deafness and gastric hyperplasia in mice. The Journal of Clinical Investigation. 106: 1447-55. PMID 11120752 DOI: 10.1172/JCI10897 |
0.8 |
|
| 1998 |
Randhawa GS, Cui H, Barletta JA, Strichman-Almashanu LZ, Talpaz M, Kantarjian H, Deisseroth AB, Champlin RC, Feinberg AP. Loss of imprinting in disease progression in chronic myelogenous leukemia. Blood. 91: 3144-7. PMID 9558368 |
0.76 |
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