Robert P. Rambo, Ph.D. - Publications

2003 Yale University, New Haven, CT 
General Biophysics, Biochemistry

41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Byrne EF, Sircar R, Miller PS, Hedger G, Luchetti G, Nachtergaele S, Tully MD, Mydock-McGrane L, Covey DF, Rambo RP, Sansom MS, Newstead S, Rohatgi R, Siebold C. Structural basis of Smoothened regulation by its extracellular domains. Nature. PMID 27437577 DOI: 10.1038/Nature18934  0.44
2015 Hengrung N, El Omari K, Serna Martin I, Vreede FT, Cusack S, Rambo RP, Vonrhein C, Bricogne G, Stuart DI, Grimes JM, Fodor E. Crystal structure of the RNA-dependent RNA polymerase from influenza C virus. Nature. 527: 114-7. PMID 26503046 DOI: 10.1038/Nature15525  0.44
2015 Rambo RP. Resolving Individual Components in Protein-RNA Complexes Using Small-Angle X-ray Scattering Experiments. Methods in Enzymology. 558: 363-90. PMID 26068747 DOI: 10.1016/bs.mie.2015.02.004  0.44
2015 Gervais D, King D, Kanda P, Foote N, Elliott L, Brown P, Lee NO, Thalassinos K, Pizzey C, Rambo R, Minshull TC, Dickman MJ, Smith S. Structural Characterisation of Non-Deamidated Acidic Variants of Erwinia chrysanthemi L-asparaginase Using Small-Angle X-ray Scattering and Ion-Mobility Mass Spectrometry. Pharmaceutical Research. PMID 26040662 DOI: 10.1007/s11095-015-1722-2  0.44
2015 Rambo RP, Tainer JA. Modeling macromolecular motions by x-ray-scattering-constrained molecular dynamics. Biophysical Journal. 108: 2421-3. PMID 25992719 DOI: 10.1016/j.bpj.2015.04.023  0.44
2014 Reyes FE, Schwartz CR, Tainer JA, Rambo RP. Methods for using new conceptual tools and parameters to assess RNA structure by small-angle X-ray scattering. Methods in Enzymology. 549: 235-63. PMID 25432752 DOI: 10.1016/B978-0-12-801122-5.00011-8  0.44
2014 Pratt AJ, Shin DS, Merz GE, Rambo RP, Lancaster WA, Dyer KN, Borbat PP, Poole FL, Adams MW, Freed JH, Crane BR, Tainer JA, Getzoff ED. Aggregation propensities of superoxide dismutase G93 hotspot mutants mirror ALS clinical phenotypes. Proceedings of the National Academy of Sciences of the United States of America. 111: E4568-76. PMID 25316790 DOI: 10.1073/Pnas.1308531111  0.44
2014 Mason AC, Rambo RP, Greer B, Pritchett M, Tainer JA, Cortez D, Eichman BF. A structure-specific nucleic acid-binding domain conserved among DNA repair proteins. Proceedings of the National Academy of Sciences of the United States of America. 111: 7618-23. PMID 24821763 DOI: 10.1073/Pnas.1324143111  0.44
2014 Groocock LM, Nie M, Prudden J, Moiani D, Wang T, Cheltsov A, Rambo RP, Arvai AS, Hitomi C, Tainer JA, Luger K, Perry JJ, Lazzerini-Denchi E, Boddy MN. RNF4 interacts with both SUMO and nucleosomes to promote the DNA damage response. Embo Reports. 15: 601-8. PMID 24714598 DOI: 10.1002/Embr.201338369  0.44
2014 Dyer KN, Hammel M, Rambo RP, Tsutakawa SE, Rodic I, Classen S, Tainer JA, Hura GL. High-throughput SAXS for the characterization of biomolecules in solution: a practical approach. Methods in Molecular Biology (Clifton, N.J.). 1091: 245-58. PMID 24203338 DOI: 10.1007/978-1-62703-691-7_18  0.44
2014 Zhao W, Saro D, Hammel M, Kwon Y, Xu Y, Rambo RP, Williams GJ, Chi P, Lu L, Pezza RJ, Camerini-Otero RD, Tainer JA, Wang HW, Sung P. Mechanistic insights into the role of Hop2-Mnd1 in meiotic homologous DNA pairing. Nucleic Acids Research. 42: 906-17. PMID 24150939 DOI: 10.1093/Nar/Gkt924  0.44
2013 Strulson CA, Yennawar NH, Rambo RP, Bevilacqua PC. Molecular crowding favors reactivity of a human ribozyme under physiological ionic conditions. Biochemistry. 52: 8187-97. PMID 24187989 DOI: 10.1021/Bi400816S  0.44
2013 Hura GL, Budworth H, Dyer KN, Rambo RP, Hammel M, McMurray CT, Tainer JA. Comprehensive macromolecular conformations mapped by quantitative SAXS analyses. Nature Methods. 10: 453-4. PMID 23624664 DOI: 10.1038/nmeth.2453  0.44
2013 Rambo RP, Tainer JA. Accurate assessment of mass, models and resolution by small-angle scattering. Nature. 496: 477-81. PMID 23619693 DOI: 10.1038/nature12070  0.44
2013 Rambo RP, Tainer JA. Super-resolution in solution X-ray scattering and its applications to structural systems biology. Annual Review of Biophysics. 42: 415-41. PMID 23495971 DOI: 10.1146/annurev-biophys-083012-130301  0.44
2013 Classen S, Hura GL, Holton JM, Rambo RP, Rodic I, McGuire PJ, Dyer K, Hammel M, Meigs G, Frankel KA, Tainer JA. Implementation and performance of SIBYLS: a dual endstation small-angle X-ray scattering and macromolecular crystallography beamline at the Advanced Light Source. Journal of Applied Crystallography. 46: 1-13. PMID 23396808 DOI: 10.1107/S0021889812048698  0.44
2013 Brosey CA, Yan C, Tsutakawa SE, Heller WT, Rambo RP, Tainer JA, Ivanov I, Chazin WJ. A new structural framework for integrating replication protein A into DNA processing machinery. Nucleic Acids Research. 41: 2313-27. PMID 23303776 DOI: 10.1093/Nar/Gks1332  0.44
2012 Pratt AJ, Rambo RP, Lau PW, MacRae IJ. Preparation and characterization of the extracellular domain of human Sid-1. Plos One. 7: e33607. PMID 22509261 DOI: 10.1371/Journal.Pone.0033607  0.44
2012 Roberts VA, Pique ME, Hsu S, Li S, Slupphaug G, Rambo RP, Jamison JW, Liu T, Lee JH, Tainer JA, Ten Eyck LF, Woods VL. Combining H/D exchange mass spectroscopy and computational docking reveals extended DNA-binding surface on uracil-DNA glycosylase. Nucleic Acids Research. 40: 6070-81. PMID 22492624 DOI: 10.1093/Nar/Gks291  0.44
2012 Bétous R, Mason AC, Rambo RP, Bansbach CE, Badu-Nkansah A, Sirbu BM, Eichman BF, Cortez D. SMARCAL1 catalyzes fork regression and Holliday junction migration to maintain genome stability during DNA replication. Genes & Development. 26: 151-62. PMID 22279047 DOI: 10.1101/Gad.178459.111  0.44
2011 Singh RK, Larson JD, Zhu W, Rambo RP, Hura GL, Becker DF, Tanner JJ. Small-angle X-ray scattering studies of the oligomeric state and quaternary structure of the trifunctional proline utilization A (PutA) flavoprotein from Escherichia coli. The Journal of Biological Chemistry. 286: 43144-53. PMID 22013066 DOI: 10.1074/Jbc.M111.292474  0.44
2011 Kazantsev AV, Rambo RP, Karimpour S, Santalucia J, Tainer JA, Pace NR. Solution structure of RNase P RNA. Rna (New York, N.Y.). 17: 1159-71. PMID 21531920 DOI: 10.1261/Rna.2563511  0.44
2011 Rambo RP, Tainer JA. Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law. Biopolymers. 95: 559-71. PMID 21509745 DOI: 10.1002/bip.21638  0.44
2010 Rambo RP, Williams GJ, Tainer JA. Achieving fidelity in homologous recombination despite extreme complexity: informed decisions by molecular profiling. Molecular Cell. 40: 347-8. PMID 21070960 DOI: 10.1016/j.molcel.2010.10.032  0.44
2010 Stoddard CD, Montange RK, Hennelly SP, Rambo RP, Sanbonmatsu KY, Batey RT. Free state conformational sampling of the SAM-I riboswitch aptamer domain. Structure (London, England : 1993). 18: 787-97. PMID 20637415 DOI: 10.1016/J.Str.2010.04.006  0.44
2010 Hammond JA, Rambo RP, Kieft JS. Multi-domain packing in the aminoacylatable 3' end of a plant viral RNA. Journal of Molecular Biology. 399: 450-63. PMID 20398674 DOI: 10.1016/J.Jmb.2010.04.016  0.44
2010 Rambo RP, Tainer JA. Improving small-angle X-ray scattering data for structural analyses of the RNA world. Rna (New York, N.Y.). 16: 638-46. PMID 20106957 DOI: 10.1261/rna.1946310  0.44
2010 Rambo RP, Tainer JA. Bridging the solution divide: comprehensive structural analyses of dynamic RNA, DNA, and protein assemblies by small-angle X-ray scattering. Current Opinion in Structural Biology. 20: 128-37. PMID 20097063 DOI: 10.1016/  0.44
2010 Hammel M, Yu Y, Mahaney BL, Cai B, Ye R, Phipps BM, Rambo RP, Hura GL, Pelikan M, So S, Abolfath RM, Chen DJ, Lees-Miller SP, Tainer JA. Ku and DNA-dependent protein kinase dynamic conformations and assembly regulate DNA binding and the initial non-homologous end joining complex. The Journal of Biological Chemistry. 285: 1414-23. PMID 19893054 DOI: 10.1074/Jbc.M109.065615  0.44
2009 Nishimura N, Hitomi K, Arvai AS, Rambo RP, Hitomi C, Cutler SR, Schroeder JI, Getzoff ED. Structural mechanism of abscisic acid binding and signaling by dimeric PYR1. Science (New York, N.Y.). 326: 1373-9. PMID 19933100 DOI: 10.1126/Science.1181829  0.44
2009 Hura GL, Menon AL, Hammel M, Rambo RP, Poole FL, Tsutakawa SE, Jenney FE, Classen S, Frankel KA, Hopkins RC, Yang SJ, Scott JW, Dillard BD, Adams MW, Tainer JA. Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS). Nature Methods. 6: 606-12. PMID 19620974 DOI: 10.1038/Nmeth.1353  0.44
2009 Hammond JA, Rambo RP, Filbin ME, Kieft JS. Comparison and functional implications of the 3D architectures of viral tRNA-like structures. Rna (New York, N.Y.). 15: 294-307. PMID 19144910 DOI: 10.1261/Rna.1360709  0.44
2008 Garst AD, Héroux A, Rambo RP, Batey RT. Crystal structure of the lysine riboswitch regulatory mRNA element. The Journal of Biological Chemistry. 283: 22347-51. PMID 18593706 DOI: 10.1074/Jbc.C800120200  0.44
2008 Gilbert SD, Rambo RP, Van Tyne D, Batey RT. Structure of the SAM-II riboswitch bound to S-adenosylmethionine. Nature Structural & Molecular Biology. 15: 177-82. PMID 18204466 DOI: 10.1038/Nsmb.1371  0.44
2008 Costantino DA, Pfingsten JS, Rambo RP, Kieft JS. tRNA-mRNA mimicry drives translation initiation from a viral IRES. Nature Structural & Molecular Biology. 15: 57-64. PMID 18157151 DOI: 10.1038/Nsmb1351  0.44
2007 Keel AY, Rambo RP, Batey RT, Kieft JS. A general strategy to solve the phase problem in RNA crystallography. Structure (London, England : 1993). 15: 761-72. PMID 17637337 DOI: 10.1016/J.Str.2007.06.003  0.44
2004 Rambo RP, Doudna JA. Assembly of an active group II intron-maturase complex by protein dimerization. Biochemistry. 43: 6486-97. PMID 15157082 DOI: 10.1021/Bi049912U  0.44
2000 Batey RT, Rambo RP, Lucast L, Rha B, Doudna JA. Crystal structure of the ribonucleoprotein core of the signal recognition particle. Science (New York, N.Y.). 287: 1232-9. PMID 10678824 DOI: 10.1126/Science.287.5456.1232  0.44
1999 Batey RT, Rambo RP, Doudna JA. Tertiary Motifs in RNA Structure and Folding. Angewandte Chemie (International Ed. in English). 38: 2326-2343. PMID 10458781 DOI: 10.1002/(Sici)1521-3773(19990816)38:16<2326::Aid-Anie2326>3.0.Co;2-3  0.44
1998 Basu S, Rambo RP, Strauss-Soukup J, Cate JH, Ferré-D'Amaré AR, Strobel SA, Doudna JA. A specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptor. Nature Structural Biology. 5: 986-92. PMID 9808044 DOI: 10.1038/2960  0.44
1992 Chen X, Rambo R, Matthews CR. Amino acid replacements can selectively affect the interaction energy of autonomous folding units in the alpha subunit of tryptophan synthase. Biochemistry. 31: 2219-23. PMID 1540577 DOI: 10.1021/Bi00123A002  0.44
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