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Monica Berrondo, Ph.D. - Publications

Affiliations: 
2010 Johns Hopkins University, Baltimore, MD 
Area:
General Biophysics, Chemical Engineering
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9 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Berrondo M, Kaufmann S, Berrondo M. Automated Aufbau of antibody structures from given sequences using Macromoltek's SmrtMolAntibody. Proteins. 82: 1636-45. PMID 24777752 DOI: 10.1002/Prot.24595  0.375
2012 Miklos AE, Kluwe C, Der BS, Pai S, Sircar A, Hughes RA, Berrondo M, Xu J, Codrea V, Buckley PE, Calm AM, Welsh HS, Warner CR, Zacharko MA, Carney JP, et al. Structure-based design of supercharged, highly thermoresistant antibodies. Chemistry & Biology. 19: 449-55. PMID 22520751 DOI: 10.1016/J.Chembiol.2012.01.018  0.685
2011 Berrondo M, Gray JJ. Computed structures of point deletion mutants and their enzymatic activities Proteins: Structure, Function and Bioinformatics. 79: 2844-2860. PMID 21905110 DOI: 10.1002/Prot.23109  0.623
2011 Chaudhury S, Berrondo M, Weitzner BD, Muthu P, Bergman H, Gray JJ. Benchmarking and analysis of protein docking performance in Rosetta v3.2. Plos One. 6: e22477. PMID 21829626 DOI: 10.1371/Journal.Pone.0022477  0.725
2011 Leaver-Fay A, Tyka M, Lewis SM, Lange OF, Thompson J, Jacak R, Kaufman K, Renfrew PD, Smith CA, Sheffler W, Davis IW, Cooper S, Treuille A, Mandell DJ, Richter F, ... ... Berrondo M, et al. ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules. Methods in Enzymology. 487: 545-74. PMID 21187238 DOI: 10.1016/B978-0-12-381270-4.00019-6  0.533
2010 Sircar A, Chaudhury S, Kilambi KP, Berrondo M, Gray JJ. A generalized approach to sampling backbone conformations with RosettaDock for CAPRI rounds 13-19 Proteins: Structure, Function and Bioinformatics. 78: 3115-3123. PMID 20535822 DOI: 10.1002/Prot.22765  0.632
2010 Berrondo M, Gray JJ, Schleif R. Computational Predictions of the Mutant Behavior of AraC Journal of Molecular Biology. 398: 462-470. PMID 20338183 DOI: 10.1016/J.Jmb.2010.03.021  0.623
2008 Berrondo M, Ostermeier M, Gray JJ. Structure Prediction of Domain Insertion Proteins from Structures of Individual Domains Structure. 16: 513-527. PMID 18400174 DOI: 10.1016/J.Str.2008.01.012  0.732
2007 Chaudhury S, Sircar A, Sivasubramanian A, Berrondo M, Gray JJ. Incorporating biochemical information and backbone flexibility in RosettaDock for CAPRI rounds 6-12 Proteins: Structure, Function and Genetics. 69: 793-800. PMID 17894347 DOI: 10.1002/Prot.21731  0.642
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