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William George Noid - Publications

Affiliations: 
Chemistry Pennsylvania State University, State College, PA, United States 
Area:
Molecular Chemistry
Website:
http://chem.psu.edu/directory/wgn1
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45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Foley TT, Kidder KM, Shell MS, Noid WG. Exploring the landscape of model representations. Proceedings of the National Academy of Sciences of the United States of America. 117: 24061-24068. PMID 32929015 DOI: 10.1073/Pnas.2000098117  0.353
2019 DeLyser MR, Noid WG. Analysis of local density potentials. The Journal of Chemical Physics. 151: 224106. PMID 31837690 DOI: 10.1063/1.5128665  0.398
2019 Lebold KM, Noid WG. Dual-potential approach for coarse-grained implicit solvent models with accurate, internally consistent energetics and predictive transferability. The Journal of Chemical Physics. 151: 164113. PMID 31675902 DOI: 10.1063/1.5125246  0.37
2019 Dunn NJH, Gutama B, Noid WG. Simple Simulation Model for Exploring the Effects of Solvent and Structure on Asphaltene Aggregation. The Journal of Physical Chemistry. B. 123: 6111-6122. PMID 31287309 DOI: 10.1021/Acs.Jpcb.9B04275  0.354
2019 Lebold KM, Noid WG. Dual approach for effective potentials that accurately model structure and energetics. The Journal of Chemical Physics. 150: 234107. PMID 31228924 DOI: 10.1063/1.5094330  0.35
2019 Lebold KM, Noid WG. Systematic study of temperature and density variations in effective potentials for coarse-grained models of molecular liquids. Journal of Chemical Physics. 150: 14104-14104. PMID 30621403 DOI: 10.1063/1.5050509  0.349
2017 Dunn NJH, Lebold KM, DeLyser MR, Rudzinski JF, Noid WG. BOCS: Bottom-Up Open-Source Coarse-Graining Software. The Journal of Physical Chemistry. B. PMID 29227668 DOI: 10.1021/Acs.Jpcb.7B09993  0.372
2017 DeLyser MR, Noid WG. Extending pressure-matching to inhomogeneous systems via local-density potentials. The Journal of Chemical Physics. 147: 134111. PMID 28987122 DOI: 10.1063/1.4999633  0.318
2017 Rudzinski JF, Lu K, Milner ST, Maranas JK, Noid WG. Extended Ensemble Approach to Transferable Potentials for Low-Resolution Coarse-Grained Models of Ionomers. Journal of Chemical Theory and Computation. 13: 2185-2201. PMID 28399373 DOI: 10.1021/Acs.Jctc.6B01160  0.379
2017 Liao YT, Manson AC, DeLyser MR, Noid WG, Cremer PS. Trimethylamine N-oxide stabilizes proteins via a distinct mechanism compared with betaine and glycine. Proceedings of the National Academy of Sciences of the United States of America. 114: 2479-2484. PMID 28228526 DOI: 10.1073/Pnas.1614609114  0.339
2016 Dunn NJ, Foley TT, Noid WG. Van der Waals Perspective on Coarse-Graining: Progress toward Solving Representability and Transferability Problems. Accounts of Chemical Research. 49: 2832-2840. PMID 27993007 DOI: 10.1021/Acs.Accounts.6B00498  0.388
2016 Dunn NJ, Noid WG. Bottom-up coarse-grained models with predictive accuracy and transferability for both structural and thermodynamic properties of heptane-toluene mixtures. The Journal of Chemical Physics. 144: 204124. PMID 27250296 DOI: 10.1063/1.4952422  0.36
2016 Sahu D, Bastidas M, Lawrence CW, Noid WG, Showalter SA. Assessing Coupled Protein Folding and Binding Through Temperature-Dependent Isothermal Titration Calorimetry. Methods in Enzymology. 567: 23-45. PMID 26794349 DOI: 10.1016/Bs.Mie.2015.07.032  0.307
2015 Dunn NJ, Noid WG. Bottom-up coarse-grained models that accurately describe the structure, pressure, and compressibility of molecular liquids. The Journal of Chemical Physics. 143: 243148. PMID 26723633 DOI: 10.1063/1.4937383  0.39
2015 Foley TT, Shell MS, Noid WG. The impact of resolution upon entropy and information in coarse-grained models. The Journal of Chemical Physics. 143: 243104. PMID 26723589 DOI: 10.1063/1.4929836  0.375
2015 Rudzinski JF, Noid WG. Bottom-Up Coarse-Graining of Peptide Ensembles and Helix-Coil Transitions. Journal of Chemical Theory and Computation. 11: 1278-91. PMID 26579774 DOI: 10.1021/Ct5009922  0.354
2015 Rudzinski JF, Noid WG. A generalized-Yvon-Born-Green method for coarse-grained modeling The European Physical Journal Special Topics. 224: 2193-2216. DOI: 10.1140/Epjst/E2015-02408-9  0.363
2014 Ellis CR, Noid WG. Deciphering the glycosylation code. The Journal of Physical Chemistry. B. 118: 11462-9. PMID 25188817 DOI: 10.1016/J.Bpj.2014.11.2802  0.352
2014 Rudzinski JF, Noid WG. Investigation of coarse-grained mappings via an iterative generalized Yvon-Born-Green method. The Journal of Physical Chemistry. B. 118: 8295-312. PMID 24684663 DOI: 10.1021/Jp501694Z  0.372
2013 Noid WG. Perspective: Coarse-grained models for biomolecular systems. Journal of Chemical Physics. 139: 90901. PMID 24028092 DOI: 10.1063/1.4818908  0.34
2013 Noid WG. Systematic methods for structurally consistent coarse-grained models. Methods in Molecular Biology (Clifton, N.J.). 924: 487-531. PMID 23034761 DOI: 10.1007/978-1-62703-017-5_19  0.356
2012 Rudzinski JF, Noid WG. The role of many-body correlations in determining potentials for coarse-grained models of equilibrium structure. The Journal of Physical Chemistry. B. 116: 8621-35. PMID 22564079 DOI: 10.1021/Jp3002004  0.391
2012 Ellis CR, Maiti B, Noid WG. Specific and nonspecific effects of glycosylation. Journal of the American Chemical Society. 134: 8184-93. PMID 22524526 DOI: 10.1021/Ja301005F  0.332
2012 Rudzinski JF, Noid WG. Coarse-graining entropy, forces, and structures. The Journal of Chemical Physics. 135: 214101. PMID 22149773 DOI: 10.1063/1.3663709  0.396
2011 Wostenberg C, Kumar S, Noid WG, Showalter SA. Atomistic simulations reveal structural disorder in the RAP74-FCP1 complex. The Journal of Physical Chemistry. B. 115: 13731-9. PMID 21988473 DOI: 10.1021/Jp208008M  0.333
2011 Mullinax JW, Noid WG. Reference state for the generalized Yvon-Born-Green theory: application for coarse-grained model of hydrophobic hydration. The Journal of Chemical Physics. 133: 124107. PMID 20886924 DOI: 10.1063/1.3481574  0.401
2010 Mullinax JW, Noid WG. Recovering physical potentials from a model protein databank Proceedings of the National Academy of Sciences of the United States of America. 107: 19867-19872. PMID 21041685 DOI: 10.1073/Pnas.1006428107  0.334
2010 Mullinax JW, Noid WG. A Generalized-Yvon−Born−Green Theory for Determining Coarse-Grained Interaction Potentials† Journal of Physical Chemistry C. 114: 5661-5674. DOI: 10.1021/Jp9073976  0.38
2009 Krishna V, Noid WG, Voth GA. The multiscale coarse-graining method. IV. Transferring coarse-grained potentials between temperatures. The Journal of Chemical Physics. 131: 024103. PMID 19603966 DOI: 10.1063/1.3167797  0.33
2009 Wang Y, Noid WG, Liu P, Voth GA. Effective force coarse-graining. Physical Chemistry Chemical Physics : Pccp. 11: 2002-15. PMID 19280011 DOI: 10.1039/B819182D  0.357
2009 Mullinax JW, Noid WG. Extended ensemble approach for deriving transferable coarse-grained potentials Journal of Chemical Physics. 131: 104110. DOI: 10.1063/1.3220627  0.386
2008 Zhang Z, Lu L, Noid WG, Krishna V, Pfaendtner J, Voth GA. A systematic methodology for defining coarse-grained sites in large biomolecules. Biophysical Journal. 95: 5073-83. PMID 18757560 DOI: 10.1529/Biophysj.108.139626  0.389
2008 Noid WG, Liu P, Wang Y, Chu JW, Ayton GS, Izvekov S, Andersen HC, Voth GA. The multiscale coarse-graining method. II. Numerical implementation for coarse-grained molecular models. The Journal of Chemical Physics. 128: 244115. PMID 18601325 DOI: 10.1063/1.2938857  0.357
2008 Noid WG, Chu JW, Ayton GS, Krishna V, Izvekov S, Voth GA, Das A, Andersen HC. The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models. The Journal of Chemical Physics. 128: 244114. PMID 18601324 DOI: 10.1063/1.2938860  0.387
2007 Noid WG, Chu JW, Ayton GS, Voth GA. Multiscale coarse-graining and structural correlations: connections to liquid-state theory. The Journal of Physical Chemistry. B. 111: 4116-27. PMID 17394308 DOI: 10.1021/Jp068549T  0.331
2007 Ayton GS, Noid WG, Voth GA. Multiscale modeling of biomolecular systems: in serial and in parallel. Current Opinion in Structural Biology. 17: 192-8. PMID 17383173 DOI: 10.1016/J.Sbi.2007.03.004  0.372
2007 Ayton GS, Noid WG, Voth GA. Systematic Coarse Graining of Biomolecular and Soft-Matter Systems Mrs Bulletin. 32: 929-934. DOI: 10.1557/Mrs2007.190  0.359
2005 Noid WG, Loring RF. Classical and quantum mechanical infrared echoes from resonantly coupled molecular vibrations. The Journal of Chemical Physics. 122: 174507. PMID 15910045 DOI: 10.1063/1.1888485  0.624
2005 Noid WG, Loring RF. Nonlinear spectroscopy of resonantly coupled classical mechanical molecular vibrations Molecular Physics. 103: 3071-3081. DOI: 10.1080/00268970500245999  0.635
2004 Noid WG, Loring RF. Interpreting nonlinear vibrational spectroscopy with the classical mechanical analogs of double-sided Feynman diagrams. The Journal of Chemical Physics. 121: 7057-69. PMID 15473771 DOI: 10.1063/1.1792211  0.643
2004 Noid WG, Ezra GS, Loring RF. Semiclassical calculation of the vibrational echo. The Journal of Chemical Physics. 120: 1491-9. PMID 15268274 DOI: 10.1063/1.1633550  0.647
2004 Noid WG, Ezra GS, Loring RF. Vibrational echoes: Dephasing, rephasing, and the stability of classical trajectories Journal of Physical Chemistry B. 108: 6536-6543. DOI: 10.1021/Jp036749O  0.649
2003 Merchant KA, Noid WG, Akiyama R, Finkelstein IJ, Goun A, McClain BL, Loring RF, Fayer MD. Myoglobin-CO substate structures and dynamics: multidimensional vibrational echoes and molecular dynamics simulations. Journal of the American Chemical Society. 125: 13804-18. PMID 14599220 DOI: 10.1021/Ja035654X  0.647
2003 Noid WG, Ezra GS, Loring RF. Optical response functions with semiclassical dynamics Journal of Chemical Physics. 119: 1003-1020. DOI: 10.1063/1.1577319  0.628
2003 Merchant KA, Noid WG, Thompson DE, Akiyama R, Loring RF, Fayer MD. Structural assignments and dynamics of the a substates of MbCo: Spectrally resolved vibrational echo experiments and molecular dynamics simulations Journal of Physical Chemistry B. 107: 4-7. DOI: 10.1021/Jp026793O  0.626
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