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Volker Dötsch - Related publications

Goethe University Frankfurt Institute of Biophysical Chemistry 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Imbert L, Lenoir-Capello R, Crublet E, Vallet A, Awad R, Ayala I, Juillan-Binard C, Mayerhofer H, Kerfah R, Gans P, Miclet E, Boisbouvier J. In Vitro Production of Perdeuterated Proteins in HO for Biomolecular NMR Studies. Methods in Molecular Biology (Clifton, N.J.). 2199: 127-149. PMID 33125648 DOI: 10.1007/978-1-0716-0892-0_8   
2021 Cheng N, Zhang H, Zhang S, Ma X, Meng G. Crystal structure of the GTP-binding protein-like domain of AGAP1. Acta Crystallographica. Section F, Structural Biology Communications. 77: 105-112. PMID 33830075 DOI: 10.1107/S2053230X21003150   
2021 Cheng N, Zhang H, Zhang S, Ma X, Meng G. Crystal structure of the GTP-binding protein-like domain of AGAP1. Acta Crystallographica. Section F, Structural Biology Communications. 77: 105-112. PMID 33830075 DOI: 10.1107/S2053230X21003150   
2021 An H, Richardson A, Rajasekariah P, Zhong L, Fernando BSM, Macmillan A, Klotzsch E, Bryant K, Kaakoush NO, Tedla N. Nuclear Leukocyte Immunoglobulin-like Receptor A3 Is Monomeric and Is Involved in Multiple Layers of Regulated Gene Expression and Translation. Journal of Proteome Research. PMID 33793249 DOI: 10.1021/acs.jproteome.0c00946   
2021 Vu HN, Situ AJ, Ulmer TS. Isothermal Titration Calorimetry of Membrane Proteins. Methods in Molecular Biology (Clifton, N.J.). 2302: 69-79. PMID 33877623 DOI: 10.1007/978-1-0716-1394-8_5   
2021 Ferrando J, Solomon LA. Recent Progress Using De Novo Design to Study Protein Structure, Design and Binding Interactions. Life (Basel, Switzerland). 11. PMID 33802210 DOI: 10.3390/life11030225   
2021 Allen JR, Wilkinson EG, Strader LC. Creativity Comes from Interactions: Modules of Protein Interactions in Plants. The Febs Journal. PMID 33774929 DOI: 10.1111/febs.15847   
2021 Yu C, Bianco PR. In Vivo Binding of Single-Stranded DNA-Binding Protein to Stalled Replication Fork Helicases. Methods in Molecular Biology (Clifton, N.J.). 2281: 81-91. PMID 33847953 DOI: 10.1007/978-1-0716-1290-3_5   
2021 Peleg Y, Vincentelli R, Collins BM, Chen KE, Livingstone EK, Weeratunga S, Leneva N, Guo Q, Remans K, Perez K, E K Bjerga G, Larsen Ø, Vaněk O, Skořepa O, Jacquemin S, et al. Community-wide experimental evaluation of the PROSS stability-design method. Journal of Molecular Biology. 166964. PMID 33781758 DOI: 10.1016/j.jmb.2021.166964   
2021 Bartholow TG, Sztain T, Patel A, Lee DJ, Young MA, Abagyan R, Burkart MD. Elucidation of transient protein-protein interactions within carrier protein-dependent biosynthesis. Communications Biology. 4: 340. PMID 33727677 DOI: 10.1038/s42003-021-01838-3   
2021 Siddiqui MQ, Badmalia MD, Patel TR. Bioinformatic Analysis of Structure and Function of LIM Domains of Human Zyxin Family Proteins. International Journal of Molecular Sciences. 22. PMID 33808029 DOI: 10.3390/ijms22052647   
2021 Siddiqui MQ, Badmalia MD, Patel TR. Bioinformatic Analysis of Structure and Function of LIM Domains of Human Zyxin Family Proteins. International Journal of Molecular Sciences. 22. PMID 33808029 DOI: 10.3390/ijms22052647   
2021 Rosàs-Canyelles E, Modzelewski AJ, Gomez Martinez AE, Geldert A, Gopal A, He L, Herr AE. Multimodal detection of protein isoforms and nucleic acids from low starting cell numbers. Lab On a Chip. PMID 33978041 DOI: 10.1039/d1lc00073j   
2021 Goncharuk MV, Lushpa VA, Goncharuk SA, Arseniev AS, Mineev KS. Sampling the cultivation parameter space for the bacterial production of TLR1 intracellular domain reveals the multiple optima. Protein Expression and Purification. 181: 105832. PMID 33516826 DOI: 10.1016/j.pep.2021.105832   
2021 Jin YN, Cui ZH, Ma K, Yao JL, Ruan YY, Guo ZF. Characterization of ZmCOLD1, novel GPCR-Type G Protein genes involved in cold stress from L. and the evolution analysis with those from other species. Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 27: 619-632. PMID 33854288 DOI: 10.1007/s12298-021-00966-8   
2021 Kanitkar TR, Sen N, Nair S, Soni N, Amritkar K, Ramtirtha Y, Madhusudhan MS. Methods for Molecular Modelling of Protein Complexes. Methods in Molecular Biology (Clifton, N.J.). 2305: 53-80. PMID 33950384 DOI: 10.1007/978-1-0716-1406-8_3   
2021 Guo L, Zhao M, Tang Y, Han J, Gui Y, Ge J, Jiang S, Dai Q, Zhang W, Lin M, Zhou Z, Wang J. Modular Assembly of Ordered Hydrophilic Proteins Improve Salinity Tolerance in . International Journal of Molecular Sciences. 22. PMID 33923104 DOI: 10.3390/ijms22094482   
2021 Suazo KF, Park KY, Distefano MD. A Not-So-Ancient Grease History: Click Chemistry and Protein Lipid Modifications. Chemical Reviews. PMID 33821625 DOI: 10.1021/acs.chemrev.0c01108   
2021 Huang SK, Pandey A, Tran DP, Villanueva NL, Kitao A, Sunahara RK, Sljoka A, Prosser RS. Delineating the conformational landscape of the adenosine A receptor during G protein coupling. Cell. PMID 33743210 DOI: 10.1016/j.cell.2021.02.041   
2021 Kagami L, Roca-Martínez J, Gavaldá-García J, Ramasamy P, Feenstra KA, Vranken WF. Online biophysical predictions for SARS-CoV-2 proteins. Bmc Molecular and Cell Biology. 22: 23. PMID 33892639 DOI: 10.1186/s12860-021-00362-w   
2021 Wang P, Li RQ, Wang L, Yang WT, Zou QH, Xiao D. Proteomic Analyses of Clinical Isolates to Identify Drug Resistant Mechanism. Frontiers in Cellular and Infection Microbiology. 11: 625430. PMID 33718272 DOI: 10.3389/fcimb.2021.625430   
2021 Cagiada M, Johansson KE, Valanciute A, Nielsen SV, Hartmann-Petersen R, Yang JJ, Fowler DM, Stein A, Lindorff-Larsen K. Understanding the origins of loss of protein function by analyzing the effects of thousands of variants on activity and abundance. Molecular Biology and Evolution. PMID 33779753 DOI: 10.1093/molbev/msab095   
2021 Yoshikawa M, Yoshii T, Ikuta M, Tsukiji S. Synthetic Protein Condensates That Inducibly Recruit and Release Protein Activity in Living Cells. Journal of the American Chemical Society. PMID 33890764 DOI: 10.1021/jacs.0c12375   
2021 Liu X, Cao Y, Fu H, Wei J, Chen J, Hu J, Liu B. Proteomics Analysis of Serum from COVID-19 Patients. Acs Omega. 6: 7951-7958. PMID 33778306 DOI: 10.1021/acsomega.1c00616   
2021 Patel D, Patel JS, Ytreberg FM. Implementing and Assessing an Alchemical Method for Calculating Protein-Protein Binding Free Energy. Journal of Chemical Theory and Computation. PMID 33709712 DOI: 10.1021/acs.jctc.0c01045   
2021 Ge C, Feng N, Hu C, Tang Y, Li X, Wang X. Transwell isolation and difference analysis of capacitated boar sperm proteins based on the iTRAQ technique. Theriogenology. 168: 13-24. PMID 33839467 DOI: 10.1016/j.theriogenology.2021.03.010   
2021 Sharir-Ivry A, Xia Y. Quantifying evolutionary importance of protein sites: A Tale of two measures. Plos Genetics. 17: e1009476. PMID 33826605 DOI: 10.1371/journal.pgen.1009476   
2021 Sedova M, Jaroszewski L, Iyer M, Li Z, Godzik A. ModFlex: Towards Function Focused Protein Modeling. Journal of Molecular Biology. 433: 166828. PMID 33972023 DOI: 10.1016/j.jmb.2021.166828   
2021 Dai B, Bailey-Kellogg C. Protein Interaction Interface Region Prediction by Geometric Deep Learning. Bioinformatics (Oxford, England). PMID 33693581 DOI: 10.1093/bioinformatics/btab154   
2021 Mehla J, Liechti G, Morgenstein RM, Caufield JH, Hosseinnia A, Gagarinova A, Phanse S, Goodacre N, Brockett M, Sakhawalkar N, Babu M, Xiao R, Montelione GT, Vorobiev S, Blaauwen TD, et al. ZapG (YhcB/DUF1043), a novel cell division protein in gamma-proteobacteria linking the Z-ring to septal peptidoglycan synthesis. The Journal of Biological Chemistry. 100700. PMID 33895137 DOI: 10.1016/j.jbc.2021.100700   
2021 Yang J, Wang F, Chen B. The role of WDR76 in diverse interactions and human diseases. Bosnian Journal of Basic Medical Sciences. PMID 33714259 DOI: 10.17305/bjbms.2020.5506   
2021 Jiang H, Bao J, Xing Y, Feng C, Li X, Chen Q. Proteomic Analysis of the Hemolymph After Infection in the Chinese Mitten Crab . Frontiers in Immunology. 12: 659723. PMID 33868309 DOI: 10.3389/fimmu.2021.659723   
2021 Kuechler ER, Rose A, Bolten M, Madero A, Kammoonah S, Colborne S, Gsponer J, Morin GB, Mayor T. Protein feature analysis of heat shock induced ubiquitination sites reveals preferential modification site localization. Journal of Proteomics. 239: 104182. PMID 33705978 DOI: 10.1016/j.jprot.2021.104182   
2021 Wang N, Zhang J, Liu B. IDRBP-PPCT: Identifying nucleic acid-binding proteins based on Position-Specific Score Matrix and Position-Specific Frequency Matrix Cross Transformation. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 33780341 DOI: 10.1109/TCBB.2021.3069263   
2021 Speer SL, Zheng W, Jiang X, Chu IT, Guseman AJ, Liu M, Pielak GJ, Li C. The intracellular environment affects protein-protein interactions. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33836588 DOI: 10.1073/pnas.2019918118   
2021 Kim DG, Choi Y, Kim HS. Epitopes of Protein Binders Are Related to the Structural Flexibility of a Target Protein Surface. Journal of Chemical Information and Modeling. PMID 33829791 DOI: 10.1021/acs.jcim.0c01397   
2021 Guo Y, Li Y, Zhou S, Ye Q, Zan X, He Y. Metal-Organic Framework-Based Composites for Protein Delivery and Therapeutics. Acs Biomaterials Science & Engineering. PMID 33901394 DOI: 10.1021/acsbiomaterials.0c01600   
2021 Blanco-Urrejola M, Gaminde-Blasco A, Gamarra M, de la Cruz A, Vecino E, Alberdi E, Baleriola J. RNA Localization and Local Translation in Glia in Neurological and Neurodegenerative Diseases: Lessons from Neurons. Cells. 10. PMID 33809142 DOI: 10.3390/cells10030632   
2021 Mihara E, Watanabe S, Bashiruddin NK, Nakamura N, Matoba K, Sano Y, Maini R, Yin Y, Sakai K, Arimori T, Matsumoto K, Suga H, Takagi J. Lasso-grafting of macrocyclic peptide pharmacophores yields multi-functional proteins. Nature Communications. 12: 1543. PMID 33750839 DOI: 10.1038/s41467-021-21875-0   
2021 Harish M, Venkatraman P. Evolution of biophysical tools for quantitative protein interactions and drug discovery. Emerging Topics in Life Sciences. PMID 33739398 DOI: 10.1042/ETLS20200258   
2021 Das JK, Roy S. A study on non-synonymous mutational patterns in structural proteins of SARS-CoV-2. Genome. PMID 33788636 DOI: 10.1139/gen-2020-0157   
2021 Frappier V, Keating AE. Data-driven computational protein design. Current Opinion in Structural Biology. 69: 63-69. PMID 33910104 DOI: 10.1016/   
2021 Pham T, Liao R, Labaer J, Guo J. Multiplexed In Situ Protein Profiling with High-Performance Cleavable Fluorescent Tyramide. Molecules (Basel, Switzerland). 26. PMID 33921211 DOI: 10.3390/molecules26082206   
2021 Dellas N, Liu J, Botham RC, Huisman GW. Adapting protein sequences for optimized therapeutic efficacy. Current Opinion in Chemical Biology. 64: 38-47. PMID 33933937 DOI: 10.1016/j.cbpa.2021.03.005   
2021 Zhang J, Wang Y, Fu S, Yuan Q, Wang Q, Xia N, Wen Y, Li J, Tong S. Role of Small Envelope Protein in Sustaining the Intracellular and Extracellular Levels of Hepatitis B Virus Large and Middle Envelope Proteins. Viruses. 13. PMID 33918367 DOI: 10.3390/v13040613   
2021 Patni K, Agarwal P, Kumar A, Meena LS. Computational evaluation of anticipated PE_PGRS39 protein involvement in host-pathogen interplay and its integration into vaccine development. 3 Biotech. 11: 204. PMID 33824847 DOI: 10.1007/s13205-021-02746-3   
2021 Ju F, Zhu J, Shao B, Kong L, Liu TY, Zheng WM, Bu D. CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction. Nature Communications. 12: 2535. PMID 33953201 DOI: 10.1038/s41467-021-22869-8   
2021 Liu C, Wu T, Shu X, Li ST, Wang DR, Wang N, Zhou R, Yang H, Jiang H, Hendriks IA, Gong P, Zhang L, Nielsen ML, Li K, Wang L, et al. Identification of Protein Direct Interactome with Genetic Code Expansion and Search Engine OpenUaa. Advanced Biology. 5: e2000308. PMID 33729691 DOI: 10.1002/adbi.202000308   
2021 Bassot C, Elofsson A. Accurate contact-based modelling of repeat proteins predicts the structure of new repeats protein families. Plos Computational Biology. 17: e1008798. PMID 33857128 DOI: 10.1371/journal.pcbi.1008798   
2021 Weidner T, Castner DG. Developments and Ongoing Challenges for Analysis of Surface-Bound Proteins. Annual Review of Analytical Chemistry (Palo Alto, Calif.). PMID 33979545 DOI: 10.1146/annurev-anchem-091520-010206