Shaul Mukamel - Publications

Affiliations: 
Chemistry University of California, Irvine, Irvine, CA 
Area:
dynamics and relaxation processes of large molecules, biological complexes and semiconductors
Website:
http://mukamel.ps.uci.edu/

254 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Hu W, Ye S, Zhang Y, Li T, Zhang G, Luo Y, Mukamel S, Jiang J. Machine Learning Protocol for Surface Enhanced Raman Spectroscopy. The Journal of Physical Chemistry Letters. PMID 31538788 DOI: 10.1021/acs.jpclett.9b02517  0.88
2019 Cho D, Rouxel JR, Mukamel S, Chan GK, Li Z. Stimulated X-ray Raman and Absorption Spectroscopy of Iron-Sulfur Dimers. The Journal of Physical Chemistry Letters. PMID 31532691 DOI: 10.1021/acs.jpclett.9b02414  0.56
2019 Asban S, Cho D, Mukamel S. Frequency-, Time-, and Wavevector-Resolved Ultrafast Incoherent Diffraction of Noisy X-ray Pulses. The Journal of Physical Chemistry Letters. PMID 31503495 DOI: 10.1021/acs.jpclett.9b00924  0.64
2019 Zhang Z, Wang K, Yi Z, Zubairy MS, Scully MO, Mukamel S. Polariton-assisted Cooperativity of Molecules in Microcavities Monitored by Two-dimensional Infrared Spectroscopy. The Journal of Physical Chemistry Letters. PMID 31304758 DOI: 10.1021/acs.jpclett.9b00979  0.52
2019 Ye S, Hu W, Li X, Zhang J, Zhong K, Zhang G, Luo Y, Mukamel S, Jiang J. A neural network protocol for electronic excitations of -methylacetamide. Proceedings of the National Academy of Sciences of the United States of America. PMID 31147467 DOI: 10.1073/pnas.1821044116  0.52
2019 Ye L, Rouxel JR, Asban S, Rösner B, Mukamel S. Probing molecular chirality by orbital angular momentum carrying X-ray pulses. Journal of Chemical Theory and Computation. PMID 31125229 DOI: 10.1021/acs.jctc.9b00346  0.64
2019 Asban S, Dorfman KE, Mukamel S. Quantum phase-sensitive diffraction and imaging using entangled photons. Proceedings of the National Academy of Sciences of the United States of America. PMID 31123144 DOI: 10.1073/pnas.1904839116  1
2019 Cho D, Rouxel JR, Kowalewski M, Lee J, Mukamel S. Imaging of transition charge densities involving carbon core excitations by all X-ray sum-frequency generation. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 377: 20170470. PMID 30929629 DOI: 10.1098/rsta.2017.0470  0.44
2019 Tollerud JO, Sparapassi G, Montanaro A, Asban S, Glerean F, Giusti F, Marciniak A, Kourousias G, Billè F, Cilento F, Mukamel S, Fausti D. Femtosecond covariance spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. PMID 30819887 DOI: 10.1073/pnas.1821048116  0.64
2019 Rouxel JR, Zhang Y, Mukamel S. X-ray Raman optical activity of chiral molecules. Chemical Science. 10: 898-908. PMID 30774884 DOI: 10.1039/c8sc04120b  0.88
2019 Dorfman KE, Asban S, Ye L, Rouxel JR, Cho D, Mukamel S. Monitoring Spontaneous Charge-Density Fluctuations by Single-Molecule Diffraction of Quantum Light. The Journal of Physical Chemistry Letters. PMID 30676023 DOI: 10.1021/acs.jpclett.9b00071  1
2018 Ye L, Rouxel JR, Cho D, Mukamel S. Imaging electron-density fluctuations by multidimensional X-ray photon-coincidence diffraction. Proceedings of the National Academy of Sciences of the United States of America. PMID 30584098 DOI: 10.1073/pnas.1816730116  0.44
2018 Mincigrucci R, Kowalewski M, Rouxel JR, Bencivenga F, Mukamel S, Masciovecchio C. Impulsive UV-pump/X-ray probe study of vibrational dynamics in glycine. Scientific Reports. 8: 15466. PMID 30337694 DOI: 10.1038/s41598-018-33607-4  0.44
2018 Schlawin F, Dorfman KE, Mukamel S. Entangled Two-Photon Absorption Spectroscopy. Accounts of Chemical Research. 51: 2207-2214. PMID 30179458 DOI: 10.1021/acs.accounts.8b00173  1
2018 Rouxel JR, Kowalewski M, Bennett K, Mukamel S. X-Ray Sum Frequency Diffraction for Direct Imaging of Ultrafast Electron Dynamics. Physical Review Letters. 120: 243902. PMID 29956957 DOI: 10.1103/PhysRevLett.120.243902  0.64
2018 Zhang Y, Bennett K, Mukamel S. Monitoring Ultrafast Spin Crossover Intermediates in an Iron(II) Complex by Broadband Stimulated X-ray Raman Spectroscopy. The Journal of Physical Chemistry. A. PMID 29944375 DOI: 10.1021/acs.jpca.8b01762  0.88
2018 Bennett K, Kowalewski M, Rouxel JR, Mukamel S. Monitoring molecular nonadiabatic dynamics with femtosecond X-ray diffraction. Proceedings of the National Academy of Sciences of the United States of America. PMID 29891703 DOI: 10.1073/pnas.1805335115  0.64
2018 Rouxel JR, Kowalewski M, Mukamel S. Diffraction-Detected Sum Frequency Generation: Novel Ultrafast X-ray Probe of Molecular Dynamics. The Journal of Physical Chemistry Letters. 3392-3396. PMID 29863349 DOI: 10.1021/acs.jpclett.8b01095  0.44
2018 Zhang Q, Wu T, Chen C, Mukamel S, Zhuang W. Reply to Stirnemann et al.: Frame retardation is the key reason behind the general slowdown of water reorientation dynamics in concentrated electrolytes. Proceedings of the National Academy of Sciences of the United States of America. PMID 29748428 DOI: 10.1073/pnas.1805682115  0.92
2018 Ross MR, Andersen A, Fox ZW, Zhang Y, Hong K, Lee JH, Cordones AA, March AM, Doumy G, Southworth SH, Marcus MA, Schoenlein RW, Mukamel S, Govind N, Khalil M. A Comprehensive Experimental and Computational Spectroscopic Study of Hexacyanoferrate Complexes in Water: from the Infrared to X-ray Wavelengths. The Journal of Physical Chemistry. B. PMID 29613798 DOI: 10.1021/acs.jpcb.7b12532  0.88
2018 Zhang Z, Saurabh P, Dorfman KE, Debnath A, Mukamel S. Monitoring polariton dynamics in the LHCII photosynthetic antenna in a microcavity by two-photon coincidence counting. The Journal of Chemical Physics. 148: 074302. PMID 29471638 DOI: 10.1063/1.5004432  1
2018 Cho D, Rouxel JR, Kowalewski M, Saurabh P, Lee JY, Mukamel S. Phase Cycling RT-TDDFT Simulation Protocol for Nonlinear XUV and X-ray Molecular Spectroscopy. The Journal of Physical Chemistry Letters. PMID 29431442 DOI: 10.1021/acs.jpclett.8b00061  0.52
2018 Dorfman KE, Mukamel S. Multidimensional photon correlation spectroscopy of cavity polaritons. Proceedings of the National Academy of Sciences of the United States of America. PMID 29386388 DOI: 10.1073/pnas.1719443115  1
2017 Cho D, Rouxel JR, Kowalewski M, Lee JY, Mukamel S. Attosecond X-ray diffraction triggered by core or valence ionization of a dipeptide. Journal of Chemical Theory and Computation. PMID 29140696 DOI: 10.1021/acs.jctc.7b00920  0.44
2017 Zhang Y, Rouxel JR, Autschbach J, Govind N, Mukamel S. X-ray circular dichroism signals: a unique probe of local molecular chirality. Chemical Science. 8: 5969-5978. PMID 28989627 DOI: 10.1039/c7sc01347g  0.88
2017 Bennett K, Kowalewski M, Mukamel S. Comment on "Self-Referenced Coherent Diffraction X-Ray Movie of Ångstrom- and Femtosecond-Scale Atomic Motion". Physical Review Letters. 119: 069301. PMID 28949636 DOI: 10.1103/PhysRevLett.119.069301  0.64
2017 Kowalewski M, Fingerhut BP, Dorfman KE, Bennett K, Mukamel S. Simulating Coherent Multidimensional Spectroscopy of Nonadiabatic Molecular Processes: From the Infrared to the X-ray Regime. Chemical Reviews. PMID 28949133 DOI: 10.1021/acs.chemrev.7b00081  1
2017 Bennett K, Rouxel JR, Mukamel S. Linear and nonlinear frequency- and time-domain spectroscopy with multiple frequency combs. The Journal of Chemical Physics. 147: 094304. PMID 28886652 DOI: 10.1063/1.5000375  0.64
2017 Zhang Q, Wu T, Chen C, Mukamel S, Zhuang W. Molecular mechanism of water reorientational slowing down in concentrated ionic solutions. Proceedings of the National Academy of Sciences of the United States of America. PMID 28874580 DOI: 10.1073/pnas.1707453114  0.92
2017 Zhang Z, Bennett K, Chernyak VY, Mukamel S. Utilizing Microcavities to Suppress Third-Order Cascades in Fifth-Order Raman Spectra. The Journal of Physical Chemistry Letters. PMID 28671843 DOI: 10.1021/acs.jpclett.7b01129  0.64
2017 Kowalewski M, Bennett K, Mukamel S. Monitoring nonadiabatic avoided crossing dynamics in molecules by ultrafast X-ray diffraction. Structural Dynamics (Melville, N.Y.). 4: 054101. PMID 28580368 DOI: 10.1063/1.4984241  0.64
2017 Scholes GD, Fleming GR, Chen LX, Aspuru-Guzik A, Buchleitner A, Coker DF, Engel GS, van Grondelle R, Ishizaki A, Jonas DM, Lundeen JS, McCusker JK, Mukamel S, Ogilvie JP, Olaya-Castro A, et al. Using coherence to enhance function in chemical and biophysical systems. Nature. 543: 647-656. PMID 28358065 DOI: 10.1038/nature21425  0.44
2017 Rouxel JR, Kowalewski M, Mukamel S. Photoinduced molecular chirality probed by ultrafast resonant X-ray spectroscopy. Structural Dynamics (Melville, N.Y.). 4: 044006. PMID 28191484 DOI: 10.1063/1.4974260  0.44
2016 Rouxel JR, Chernyak VY, Mukamel S. Non-local real-space analysis of chiral optical signals. Chemical Science. 7: 6824-6831. PMID 28616129 DOI: 10.1039/c6sc01743f  0.44
2016 Bennett K, Kowalewski M, Mukamel S. Novel photochemistry of molecular polaritons in optical cavities. Faraday Discussions. PMID 27711849 DOI: 10.1039/c6fd00095a  0.64
2016 Dorfman KE, Zhang Y, Mukamel S. Coherent control of long-range photoinduced electron transfer by stimulated X-ray Raman processes. Proceedings of the National Academy of Sciences of the United States of America. PMID 27559082 DOI: 10.1073/pnas.1610729113  1
2016 Kowalewski M, Bennett K, Rouxel JR, Mukamel S. Monitoring Nonadiabatic Electron-Nuclear Dynamics in Molecules by Attosecond Streaking of Photoelectrons. Physical Review Letters. 117: 043201. PMID 27494470 DOI: 10.1103/PhysRevLett.117.043201  1
2016 Rouxel JR, Kowalewski M, Mukamel S. Current vs charge density contributions to nonlinear X-ray spectroscopy. Journal of Chemical Theory and Computation. PMID 27347786 DOI: 10.1021/acs.jctc.6b00279  1
2016 Kowalewski M, Bennett K, Mukamel S. Cavity Femtochemistry; Manipulating Nonadiabatic Dynamics at Avoided Crossings. The Journal of Physical Chemistry Letters. PMID 27186666 DOI: 10.1021/acs.jpclett.6b00864  0.64
2016 Bondar DI, Cabrera R, Campos A, Mukamel S, Rabitz HA. Wigner-Lindblad Equations for Quantum Friction. The Journal of Physical Chemistry Letters. PMID 27078510 DOI: 10.1021/acs.jpclett.6b00498  1
2016 Saurabh P, Mukamel S. Two-dimensional infrared spectroscopy of vibrational polaritons of molecules in an optical cavity. The Journal of Chemical Physics. 144: 124115. PMID 27036435 DOI: 10.1063/1.4944492  0.52
2016 Kowalewski M, Bennett K, Mukamel S. Non-adiabatic dynamics of molecules in optical cavities. The Journal of Chemical Physics. 144: 054309. PMID 26851923 DOI: 10.1063/1.4941053  1
2016 Hua W, Oesterling S, Biggs JD, Zhang Y, Ando H, de Vivie-Riedle R, Fingerhut BP, Mukamel S. Monitoring conical intersections in the ring opening of furan by attosecond stimulated X-ray Raman spectroscopy. Structural Dynamics (Melville, N.Y.). 3: 023601. PMID 26798832 DOI: 10.1063/1.4933007  1
2016 Schlawin F, Dorfman KE, Mukamel S. Pump-probe spectroscopy using quantum light with two-photon coincidence detection Physical Review a - Atomic, Molecular, and Optical Physics. 93. DOI: 10.1103/PhysRevA.93.023807  1
2015 Bennett K, Kowalewski M, Mukamel S. Nonadiabatic Dynamics May be Probed Through Electronic Coherence in Time-Resolved Photoelectron Spectroscopy. Journal of Chemical Theory and Computation. PMID 26691822 DOI: 10.1021/acs.jctc.5b00824  1
2015 Kowalewski M, Bennett K, Dorfman KE, Mukamel S. Catching Conical Intersections in the Act: Monitoring Transient Electronic Coherences by Attosecond Stimulated X-Ray Raman Signals. Physical Review Letters. 115: 193003. PMID 26588377 DOI: 10.1103/PhysRevLett.115.193003  1
2015 Zhang Y, Mukamel S, Khalil M, Govind N. Simulating Valence-to-Core X-ray Emission Spectroscopy of Transition Metal Complexes with Time-Dependent Density Functional Theory. Journal of Chemical Theory and Computation. PMID 26588191 DOI: 10.1021/acs.jctc.5b00763  1
2015 Goswami HP, Hua W, Zhang Y, Mukamel S, Harbola U. Electroluminescence in Molecular Junctions: A Diagrammatic Approach. Journal of Chemical Theory and Computation. 11: 4304-4315. PMID 26575925 DOI: 10.1021/acs.jctc.5b00500  0.88
2015 Nenov A, Mukamel S, Garavelli M, Rivalta I. Two-Dimensional Electronic Spectroscopy of Benzene, Phenol, and Their Dimer: An Efficient First-Principles Simulation Protocol. Journal of Chemical Theory and Computation. 11: 3755-71. PMID 26574458 DOI: 10.1021/acs.jctc.5b00443  1
2015 Chernyak VY, Saurabh P, Mukamel S. Non-linear non-local molecular electrodynamics with nano-optical fields. The Journal of Chemical Physics. 143: 164107. PMID 26520498 DOI: 10.1063/1.4934231  1
2015 Fumero G, Batignani G, Dorfman KE, Mukamel S, Scopigno T. On the Resolution Limit of Femtosecond Stimulated Raman Spectroscopy: Modelling Fifth-Order Signals with Overlapping Pulses. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 26387662 DOI: 10.1002/cphc.201500548  1
2015 Nenov A, Giussani A, Fingerhut BP, Rivalta I, Dumont E, Mukamel S, Garavelli M. Spectral lineshapes in nonlinear electronic spectroscopy. Physical Chemistry Chemical Physics : Pccp. PMID 26084213 DOI: 10.1039/c5cp01167a  1
2015 Agarwalla BK, Harbola U, Hua W, Zhang Y, Mukamel S. Coherent (photon) vs incoherent (current) detection of multidimensional optical signals from single molecules in open junctions. The Journal of Chemical Physics. 142: 212445. PMID 26049465 DOI: 10.1063/1.4919955  1
2015 Nenov A, Giussani A, Segarra-Martí J, Jaiswal VK, Rivalta I, Cerullo G, Mukamel S, Garavelli M. Modeling the high-energy electronic state manifold of adenine: Calibration for nonlinear electronic spectroscopy. The Journal of Chemical Physics. 142: 212443. PMID 26049463 DOI: 10.1063/1.4921016  1
2015 Mukamel S, Bakker HJ. Preface: Special Topic on Multidimensional Spectroscopy. The Journal of Chemical Physics. 142: 212101. PMID 26049418 DOI: 10.1063/1.4921015  1
2015 Zhang Y, Biggs JD, Mukamel S. Characterizing the Intermediates Compound I and II in the Cytochrome P450 Catalytic Cycle with Nonlinear X-ray Spectroscopy: A Simulation Study. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 16: 2006-14. PMID 25873009 DOI: 10.1002/cphc.201500064  1
2015 Zhang Y, Hua W, Bennett K, Mukamel S. Nonlinear Spectroscopy of Core and Valence Excitations Using Short X-Ray Pulses: Simulation Challenges. Topics in Current Chemistry. PMID 25863816 DOI: 10.1007/128_2014_618  1
2015 Harbola U, Agarwalla BK, Mukamel S. Response to "Comment on 'Frequency-domain stimulated and spontaneous light emission signals at molecular junctions'" [J. Chem. Phys. 142, 137101 (2015)]. The Journal of Chemical Physics. 142: 137102. PMID 25854262 DOI: 10.1063/1.4916524  1
2015 Jemmis ED, Aravamudhan S, Arunan E, Shahi A, Hunt N, Schnedermann C, Helliwell JR, Ashfold M, Prabal Goswami H, Nenov A, Deckert V, Roy Chowdhury P, Ghiggino K, Miller RJ, Goswami D, ... ... Mukamel S, et al. Future challenges: general discussion. Faraday Discussions. 177: 517-45. PMID 25831150 DOI: 10.1039/C5FD90019K  1
2015 Zanni M, Jemmis ED, Aravamudhan S, Arunan E, Hunt N, Mukhopadhyay S, Shepherd HJ, Keshavamurthy S, Dijkstra AG, Ashfold M, Prabal Goswami H, Nenov A, Medhi H, Ghiggino K, Moirangthem K, ... ... Mukamel S, et al. Local and Global Dynamics: general discussion. Faraday Discussions. 177: 381-403. PMID 25820607 DOI: 10.1039/C5FD90018B  1
2015 Bennett K, Kowalewski M, Mukamel S. Probing electronic and vibrational dynamics in molecules by time-resolved photoelectron, Auger-electron, and X-ray photon scattering spectroscopy. Faraday Discussions. 177: 405-28. PMID 25730500 DOI: 10.1039/c4fd00178h  1
2015 Gong Z, Tang Z, Mukamel S, Cao J, Wu J. A continued fraction resummation form of bath relaxation effect in the spin-boson model. The Journal of Chemical Physics. 142: 084103. PMID 25725708 DOI: 10.1063/1.4913198  1
2015 Agarwalla BK, Ando H, Dorfman KE, Mukamel S. Stochastic Liouville equations for femtosecond stimulated Raman spectroscopy. The Journal of Chemical Physics. 142: 024115. PMID 25591346 DOI: 10.1063/1.4905139  1
2015 Li J, Deng M, Voronine DV, Mukamel S, Jiang J. Two-dimensional near ultraviolet (2DNUV) spectroscopic probe of structural-dependent exciton dynamics in a protein. The Journal of Physical Chemistry. B. 119: 1314-22. PMID 25544569 DOI: 10.1021/jp509314y  0.52
2015 Mukamel S, Dorfman KE. Reply to "comment on 'Nonlinear fluctuations and dissipation in matter revealed by quantum light' " Physical Review a - Atomic, Molecular, and Optical Physics. 92. DOI: 10.1103/PhysRevA.92.057802  1
2015 Dorfman KE, Bennett K, Mukamel S. Detecting electronic coherence by multidimensional broadband stimulated x-ray Raman signals Physical Review a - Atomic, Molecular, and Optical Physics. 92. DOI: 10.1103/PhysRevA.92.023826  1
2015 Mukamel S, Dorfman KE. Nonlinear fluctuations and dissipation in matter revealed by quantum light Physical Review a - Atomic, Molecular, and Optical Physics. 91. DOI: 10.1103/PhysRevA.91.053844  1
2015 Agarwalla BK, Dorfman KE, Mukamel S. Evaluation of optical probe signals from nonequilibrium systems Physical Review a - Atomic, Molecular, and Optical Physics. 91. DOI: 10.1103/PhysRevA.91.052501  1
2015 Duan HG, Nalbach P, Prokhorenko VI, Mukamel S, Thorwart M. On the origin of oscillations in two-dimensional spectra of excitonically-coupled molecular systems New Journal of Physics. 17. DOI: 10.1088/1367-2630/17/7/072002  1
2015 Glenn R, Bennett K, Dorfman KE, Mukamel S. Photon-exchange induces optical nonlinearities in harmonic systems Journal of Physics B: Atomic, Molecular and Optical Physics. 48. DOI: 10.1088/0953-4075/48/6/065401  1
2015 Kowalewski M, Mukamel S. Stimulated Raman signals at conical intersections: Ab initio surface hopping simulation protocol with direct propagation of the nuclear wave function Journal of Chemical Physics. 143. DOI: 10.1063/1.4927475  1
2015 Wu J, Tang Z, Gong Z, Cao J, Mukamel S. Minimal model of quantum kinetic clusters for the energy-transfer network of a light-harvesting protein complex Journal of Physical Chemistry Letters. 6: 1240-1245. DOI: 10.1021/acs.jpclett.5b00227  1
2015 Goswami HP, Hua W, Zhang Y, Mukamel S, Harbola U. Electroluminescence in Molecular Junctions: A Diagrammatic Approach Journal of Chemical Theory and Computation. 11: 4304-4315. DOI: 10.1021/acs.jctc.5b00500  0.88
2014 Healion D, Zhang Y, Biggs JD, Hua W, Mukamel S. Two-dimensional x-ray correlation spectroscopy of remote core states. Structural Dynamics (Melville, N.Y.). 1: 014101. PMID 26913804 DOI: 10.1063/1.4833560  1
2014 Dorfman KE, Mukamel S. Multidimensional spectroscopy with entangled light: loop vs ladder delay scanning protocols. New Journal of Physics. 16. PMID 26709344 DOI: 10.1088/1367-2630/16/3/033013  1
2014 Bennett K, Mukamel S. Cascading and local-field effects in non-linear optics revisited: a quantum-field picture based on exchange of photons. The Journal of Chemical Physics. 140: 044313. PMID 25669529 DOI: 10.1063/1.4862236  1
2014 Kryvohuz M, Mukamel S. Nonlinear response theory in chemical kinetics. The Journal of Chemical Physics. 140: 034111. PMID 25669367 DOI: 10.1063/1.4861588  1
2014 Mann N, Nalbach P, Mukamel S, Thorwart M. Probing chirality fluctuations in molecules by nonlinear optical spectroscopy. The Journal of Chemical Physics. 141: 234305. PMID 25527933 DOI: 10.1063/1.4903858  1
2014 Zhang Y, Biggs JD, Govind N, Mukamel S. Monitoring Long-Range Electron Transfer Pathways in Proteins by Stimulated Attosecond Broadband X-ray Raman Spectroscopy. The Journal of Physical Chemistry Letters. 5: 3656-3661. PMID 25400875 DOI: 10.1021/jz501966h  1
2014 Zhang Y, Biggs JD, Hua W, Dorfman KE, Mukamel S. Three-dimensional attosecond resonant stimulated X-ray Raman spectroscopy of electronic excitations in core-ionized glycine. Physical Chemistry Chemical Physics : Pccp. 16: 24323-31. PMID 25297460 DOI: 10.1039/c4cp03361b  1
2014 Ando H, Fingerhut BP, Dorfman KE, Biggs JD, Mukamel S. Femtosecond stimulated Raman spectroscopy of the cyclobutane thymine dimer repair mechanism: a computational study. Journal of the American Chemical Society. 136: 14801-10. PMID 25238196 DOI: 10.1021/ja5063955  1
2014 Dorfman KE, Schlawin F, Mukamel S. Stimulated Raman Spectroscopy with Entangled Light: Enhanced Resolution and Pathway Selection. The Journal of Physical Chemistry Letters. 5: 2843-2849. PMID 25177427 DOI: 10.1021/jz501124a  1
2014 Harbola U, Agarwalla BK, Mukamel S. Frequency-domain stimulated and spontaneous light emission signals at molecular junctions. The Journal of Chemical Physics. 141: 074107. PMID 25149775 DOI: 10.1063/1.4892108  1
2014 Nenov A, Beccara S, Rivalta I, Cerullo G, Mukamel S, Garavelli M. Tracking conformational dynamics of polypeptides by nonlinear electronic spectroscopy of aromatic residues: a first-principles simulation study. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 15: 3282-90. PMID 25145908 DOI: 10.1002/cphc.201402374  1
2014 Zhang Y, Biggs JD, Mukamel S. Understanding Excitation Energy Transfer in Metalloporphyrin Heterodimers with Different Linkers, Bonding Structures and Geometries through Stimulated X-Ray Raman Spectroscopy. Journal of Modern Optics. 61: 558-567. PMID 25045204 DOI: 10.1080/09500340.2014.899734  1
2014 Bennett K, Biggs JD, Zhang Y, Dorfman KE, Mukamel S. Time-, frequency-, and wavevector-resolved x-ray diffraction from single molecules. The Journal of Chemical Physics. 140: 204311. PMID 24880284 DOI: 10.1063/1.4878377  1
2014 Jiang J, Lai Z, Wang J, Mukamel S. Signatures of the Protein Folding Pathway in Two-Dimensional Ultraviolet Spectroscopy. The Journal of Physical Chemistry Letters. 5: 1341-1346. PMID 24803996 DOI: 10.1021/jz5002264  1
2014 Nenov A, Rivalta I, Cerullo G, Mukamel S, Garavelli M. Disentangling Peptide Configurations via Two-Dimensional Electronic Spectroscopy: Ab Initio Simulations Beyond the Frenkel Exciton Hamiltonian. The Journal of Physical Chemistry Letters. 5: 767-771. PMID 24803989 DOI: 10.1021/jz5002314  1
2014 Fingerhut BP, Dorfman KE, Mukamel S. Probing the Conical Intersection Dynamics of the RNA Base Uracil by UV-Pump Stimulated-Raman-Probe Signals; Ab Initio Simulations. Journal of Chemical Theory and Computation. 10: 1172-1188. PMID 24803857 DOI: 10.1021/ct401012u  1
2014 Rivalta I, Nenov A, Weingart O, Cerullo G, Garavelli M, Mukamel S. Modelling time-resolved two-dimensional electronic spectroscopy of the primary photoisomerization event in rhodopsin. The Journal of Physical Chemistry. B. 118: 8396-405. PMID 24794143 DOI: 10.1021/jp502538m  1
2014 Saurabh P, Mukamel S. Communication: atomic force detection of single-molecule nonlinear optical vibrational spectroscopy. The Journal of Chemical Physics. 140: 161107. PMID 24784246 DOI: 10.1063/1.4873578  1
2014 Glenn R, Mukamel S. Multidimensional spectroscopy with a single broadband phase-shaped laser pulse. The Journal of Chemical Physics. 140: 144105. PMID 24735286 DOI: 10.1063/1.4869750  1
2014 Dorfman KE, Mukamel S. Indistinguishability and correlations of photons generated by quantum emitters undergoing spectral diffusion. Scientific Reports. 4: 3996. PMID 24510121 DOI: 10.1038/srep03996  1
2014 Glenn R, Mukamel S. Nonlinear transmission spectroscopy with dual frequency combs Physical Review a - Atomic, Molecular, and Optical Physics. 90. DOI: 10.1103/PhysRevA.90.023804  1
2014 Schlawin F, Gessner M, Mukamel S, Buchleitner A. Nonlinear spectroscopy of trapped ions Physical Review a - Atomic, Molecular, and Optical Physics. 90. DOI: 10.1103/PhysRevA.90.023603  1
2014 Schlawin F, Mukamel S. Matter correlations induced by coupling to quantum light Physical Review a - Atomic, Molecular, and Optical Physics. 89. DOI: 10.1103/PhysRevA.89.013830  1
2014 Gessner M, Schlawin F, Häffner H, Mukamel S, Buchleitner A. Nonlinear spectroscopy of controllable many-body quantum systems New Journal of Physics. 16. DOI: 10.1088/1367-2630/16/9/092001  1
2014 Dorfman KE, Mukamel S. Multidimensional spectroscopy with entangled light: Loop vs ladder delay scanning protocols New Journal of Physics. 16. DOI: 10.1088/1367-2630/16/3/033013  1
2014 Biggs JD, Bennett K, Zhang Y, Mukamel S. Multidimensional scattering of attosecond x-ray pulses detected by photon-coincidence Journal of Physics B: Atomic, Molecular and Optical Physics. 47. DOI: 10.1088/0953-4075/47/12/124037  1
2014 Nenov A, Rivalta I, Mukamel S, Garavelli M. Bidimensional electronic spectroscopy on indole in gas phase and in water from first principles Computational and Theoretical Chemistry. 1040: 295-303. DOI: 10.1016/j.comptc.2014.03.031  1
2014 Rivalta I, Nenov A, Cerullo G, Mukamel S, Garavelli M. Ab initio simulations of two-dimensional electronic spectra: The SOS//QM/MM approach International Journal of Quantum Chemistry. 114: 85-93. DOI: 10.1002/qua.24511  1
2014 Lai Z, Jiang J, Mukamel S, Wang J. Exploring the protein folding dynamics of beta3s with two-dimensional ultraviolet (2DUV) spectroscopy Israel Journal of Chemistry. DOI: 10.1002/ijch.201300141  1
2014 Zhang Y, Biggs JD, Healion D, Dorfman K, Hua W, Mukamel S. Attosecond stimulated X-ray Raman probes of energy and electron transfer in porphyrin dimers and proteins Optics Infobase Conference Papers 1
2014 Fingerhut BP, Dorfman KE, Mukamel S. Signatures of conical intersection mediated relaxation dynamics in time-resolved broadband Raman detection Optics Infobase Conference Papers 1
2014 Dorfman KE, Schlawin F, Mukamel S. Multidimensional spectroscopy with entangled light; A novel pulse scanning protocol Optics Infobase Conference Papers 1
2013 Biggs JD, Zhang Y, Healion D, Mukamel S. Multidimensional x-ray spectroscopy of valence and core excitations in cysteine. The Journal of Chemical Physics. 138: 144303. PMID 24981531 DOI: 10.1063/1.4799266  1
2013 Zhang Y, Healion D, Biggs JD, Mukamel S. Double-core excitations in formamide can be probed by X-ray double-quantum-coherence spectroscopy. The Journal of Chemical Physics. 138: 144301. PMID 24981529 DOI: 10.1063/1.4798635  1
2013 Dorfman KE, Bennett K, Zhang Y, Mukamel S. Nonlinear light scattering in molecules triggered by an impulsive X-ray Raman process. Physical Review. A. 87: 53826. PMID 24465122 DOI: 10.1103/PhysRevA.87.053826  1
2013 Schlawin F, Mukamel S. Two-photon spectroscopy of excitons with entangled photons. The Journal of Chemical Physics. 139: 244110. PMID 24387360 DOI: 10.1063/1.4848739  1
2013 Hua W, Biggs JD, Zhang Y, Healion D, Ren H, Mukamel S. Multiple Core and Vibronic Coupling Effects in Attosecond Stimulated X-Ray Raman Spectroscopy (SXRS). Journal of Chemical Theory and Computation. 9. PMID 24376391 DOI: 10.1021/ct400767g  1
2013 Chung CY, Hsu J, Mukamel S, Potma EO. Controlling stimulated coherent spectroscopy and microscopy by a position-dependent phase. Physical Review. A. 87. PMID 24371417 DOI: 10.1103/PhysRevA.87.033833  1
2013 Preketes NK, Biggs JD, Ren H, Andricioaei I, Mukamel S. Simulations of Two-dimensional Infrared and Stimulated Resonance Raman Spectra of Photoactive Yellow Protein. Chemical Physics. 422. PMID 24244064 DOI: 10.1016/j.chemphys.2012.09.002  1
2013 Jiang J, Golchert KJ, Kingsley CN, Brubaker WD, Martin RW, Mukamel S. Exploring the aggregation propensity of γS-crystallin protein variants using two-dimensional spectroscopic tools. The Journal of Physical Chemistry. B. 117: 14294-301. PMID 24219230 DOI: 10.1021/jp408000k  1
2013 Mukamel S. Coherent-control of linear signals: frequency-domain analysis. The Journal of Chemical Physics. 139: 164113. PMID 24182010 DOI: 10.1063/1.4824857  1
2013 Ren H, Lai Z, Biggs JD, Wang J, Mukamel S. Two-dimensional stimulated resonance Raman spectroscopy study of the Trp-cage peptide folding. Physical Chemistry Chemical Physics : Pccp. 15: 19457-64. PMID 24126634 DOI: 10.1039/c3cp51347e  1
2013 Dorfman KE, Fingerhut BP, Mukamel S. Time-resolved broadband Raman spectroscopies: a unified six-wave-mixing representation. The Journal of Chemical Physics. 139: 124113. PMID 24089756 DOI: 10.1063/1.4821228  1
2013 Mukamel S. Comment on "Coherence and uncertainty in nanostructured organic photovoltaics". The Journal of Physical Chemistry. A. 117: 10563-4. PMID 24032455 DOI: 10.1021/jp4071086  1
2013 Biggs JD, Zhang Y, Healion D, Mukamel S. Watching energy transfer in metalloporphyrin heterodimers using stimulated X-ray Raman spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 110: 15597-601. PMID 24019462 DOI: 10.1073/pnas.1308604110  1
2013 Lam AR, Moran SD, Preketes NK, Zhang TO, Zanni MT, Mukamel S. Study of the γD-crystallin protein using two-dimensional infrared (2DIR) spectroscopy: experiment and simulation. The Journal of Physical Chemistry. B. 117: 15436-43. PMID 23972032 DOI: 10.1021/jp405159v  1
2013 Lai Z, Preketes NK, Jiang J, Mukamel S, Wang J. Two-Dimensional Infrared (2DIR) Spectroscopy of the Peptide Beta3s Folding. The Journal of Physical Chemistry Letters. 4: 1913-1917. PMID 23956818 DOI: 10.1021/jz400598r  1
2013 Fingerhut BP, Dorfman KE, Mukamel S. Monitoring Non-Adiabatic Dynamics of the RNA Base Uracil by UV-Pump-IR-Probe Spectroscopy. The Journal of Physical Chemistry Letters. 4: 1933-1942. PMID 23914288 DOI: 10.1021/jz400776r  1
2013 Dorfman KE, Fingerhut BP, Mukamel S. Broadband infrared and Raman probes of excited-state vibrational molecular dynamics: simulation protocols based on loop diagrams. Physical Chemistry Chemical Physics : Pccp. 15: 12348-59. PMID 23783120 DOI: 10.1039/c3cp51117k  1
2013 Schlawin F, Dorfman KE, Fingerhut BP, Mukamel S. Suppression of population transport and control of exciton distributions by entangled photons. Nature Communications. 4: 1782. PMID 23653194 DOI: 10.1038/ncomms2802  1
2013 Ren H, Biggs JD, Mukamel S. Two-Dimensional Stimulated Ultraviolet Resonance Raman Spectra of Tyrosine and Tryptophan; A Simulation Study. Journal of Raman Spectroscopy : Jrs. 44: 544-559. PMID 23585708 DOI: 10.1002/jrs.4210  1
2013 Ren H, Fingerhut BP, Mukamel S. Time resolved photoelectron spectroscopy of thioflavin T photoisomerization: a simulation study. The Journal of Physical Chemistry. A. 117: 6096-104. PMID 23517370 DOI: 10.1021/jp400044t  1
2013 Lai Z, Preketes NK, Mukamel S, Wang J. Monitoring the folding of Trp-cage peptide by two-dimensional infrared (2DIR) spectroscopy. The Journal of Physical Chemistry. B. 117: 4661-9. PMID 23448437 DOI: 10.1021/jp309122b  1
2013 Dorfman KE, Voronine DV, Mukamel S, Scully MO. Photosynthetic reaction center as a quantum heat engine. Proceedings of the National Academy of Sciences of the United States of America. 110: 2746-51. PMID 23365138 DOI: 10.1073/pnas.1212666110  1
2013 Mukamel S, Healion D, Zhang Y, Biggs JD. Multidimensional attosecond resonant X-ray spectroscopy of molecules: lessons from the optical regime. Annual Review of Physical Chemistry. 64: 101-27. PMID 23245522 DOI: 10.1146/annurev-physchem-040412-110021  1
2013 Greve C, Preketes NK, Fidder H, Costard R, Koeppe B, Heisler IA, Mukamel S, Temps F, Nibbering ET, Elsaesser T. N-H stretching excitations in adenosine-thymidine base pairs in solution: pair geometries, infrared line shapes, and ultrafast vibrational dynamics. The Journal of Physical Chemistry. A. 117: 594-606. PMID 23234439 DOI: 10.1021/jp310177e  1
2013 Lam AR, Rodriguez JJ, Rojas A, Scheraga HA, Mukamel S. Tracking the mechanism of fibril assembly by simulated two-dimensional ultraviolet spectroscopy. The Journal of Physical Chemistry. A. 117: 342-50. PMID 23214934 DOI: 10.1021/jp3101267  1
2013 Lewis KL, Fuller FD, Myers JA, Yocum CF, Mukamel S, Abramavicius D, Ogilvie JP. Simulations of the two-dimensional electronic spectroscopy of the photosystem II reaction center. The Journal of Physical Chemistry. A. 117: 34-41. PMID 23210463 DOI: 10.1021/jp3081707  1
2013 Harbola U, Umapathy S, Mukamel S. Loss and gain signals in broadband stimulated-Raman spectra: Theoretical analysis Physical Review a - Atomic, Molecular, and Optical Physics. 88. DOI: 10.1103/PhysRevA.88.011801  1
2013 Dorfman KE, Mukamel S. Collective resonances in χ(3): A QED study Physical Review a - Atomic, Molecular, and Optical Physics. 87. DOI: 10.1103/PhysRevA.87.063831  1
2013 Roslyak O, Fingerhut BP, Bennett K, Mukamel S. Quasiparticle representation of coherent nonlinear optical signals of multi-excitons New Journal of Physics. 15. DOI: 10.1088/1367-2630/15/8/083049  1
2013 Gelzinis A, Valkunas L, Fuller FD, Ogilvie JP, Mukamel S, Abramavicius D. Tight-binding model of the photosystem II reaction center: Application to two-dimensional electronic spectroscopy New Journal of Physics. 15. DOI: 10.1088/1367-2630/15/7/075013  1
2013 Schlosser F, Knorr A, Mukamel S, Richter M. Using localized double-quantum-coherence spectroscopy to reconstruct the two-exciton wave function of coupled quantum emitters New Journal of Physics. 15. DOI: 10.1088/1367-2630/15/2/025004  1
2013 Schlawin F, Mukamel S. Photon statistics of intense entangled photon pulses Journal of Physics B: Atomic, Molecular and Optical Physics. 46. DOI: 10.1088/0953-4075/46/17/175502  1
2013 Roslyak O, Gumbs G, Mukamel S. Nonlinear spectroscopy of photon-dressed Dirac electrons in a quantum dot Journal of Modern Optics. 60: 57-63. DOI: 10.1080/09500340.2012.733432  1
2013 Cundiff ST, Mukamel S. Optical multidimensional coherent spectroscopy Physics Today. 66: 44-49. DOI: 10.1063/PT.3.2047  1
2013 Schlawin F, Dorfman KE, Fingerhut BF, Mukamel S. Nonlinear spectroscopy of chromophore aggregates with entangled photon pulses Epj Web of Conferences. 41. DOI: 10.1051/epjconf/20134112006  1
2013 Fingerhut BP, Bennett K, Roslyak O, Mukamel S. Selective assignment of energy transfer and charge separation pathways in reaction centers by pulse polarized 2-D photon echo spectroscopy Epj Web of Conferences. 41. DOI: 10.1051/epjconf/20134107014  1
2013 Greve C, Preketes NK, Costard R, Koeppe B, Fidder H, Nibbering ETJ, Temps F, Mukamel S, Elsaesser T. Ultrafast IR pump-probe and 2D-IR photon echo spectroscopy of adenosine-thymidine base pairs Epj Web of Conferences. 41. DOI: 10.1051/epjconf/20134105019  1
2013 Šanda F, Mukamel S. Monitoring molecular chirality exchange by photon echoes Epj Web of Conferences. 41. DOI: 10.1051/epjconf/20134102025  1
2013 Upton L, Harpham M, Suzer O, Richter M, Mukamel S, Goodson T. Optically excited entangled states in organic molecules illuminate the dark Journal of Physical Chemistry Letters. 4: 2046-2052. DOI: 10.1021/jz400851d  1
2013 Mukamel S. Many-body effects in nonlinear susceptibilities; beyond the local-field approximation Molecular Nonlinear Optics: Materials, Physics, and Devices. 1-46. DOI: 10.1016/B978-0-08-092670-4.50006-4  1
2013 Fingerhut BP, Richter M, Luo JW, Zunger A, Mukamel S. 2D optical photon echo spectroscopy of a self-assembled quantum dot Annalen Der Physik. 525: 31-42. DOI: 10.1002/andp.201200204  1
2012 Fingerhut BP, Mukamel S. Resolving the Electron Transfer Kinetics in the Bacterial Reaction Center by Pulse Polarized 2-D Photon Echo Spectroscopy. The Journal of Physical Chemistry Letters. 3: 1798-805. PMID 26291862 DOI: 10.1021/jz3006282  1
2012 Kryvohuz M, Mukamel S. Multidimensional Measures of Response and Fluctuations in Stochastic Dynamical Systems. Physical Review. A. 86. PMID 24443634 DOI: 10.1103/PhysRevA.86.043818  1
2012 Healion D, Zhang Y, Biggs JD, Govind N, Mukamel S. Entangled Valence Electron-Hole Dynamics Revealed by Stimulated Attosecond X-ray Raman Scattering. The Journal of Physical Chemistry Letters. 3: 2326-2331. PMID 23755318 DOI: 10.1021/jz300981w  1
2012 Rodriguez JJ, Mukamel S. Zeeman shift of two-dimensional optical signals of Mg-porphyrin dimers with circularly polarized beams. The Journal of Chemical Physics. 137: 205102. PMID 23206037 DOI: 10.1063/1.4767066  1
2012 Zhang Y, Biggs JD, Healion D, Govind N, Mukamel S. Core and valence excitations in resonant X-ray spectroscopy using restricted excitation window time-dependent density functional theory. The Journal of Chemical Physics. 137: 194306. PMID 23181305 DOI: 10.1063/1.4766356  1
2012 Dai X, Richter M, Li H, Bristow AD, Falvo C, Mukamel S, Cundiff ST. Two-dimensional double-quantum spectra reveal collective resonances in an atomic vapor. Physical Review Letters. 108: 193201. PMID 23003037 DOI: 10.1103/PhysRevLett.108.193201  1
2012 Guo R, Mukamel S, Klug DR. Geometry determination of complexes in a molecular liquid mixture using electron-vibration-vibration two-dimensional infrared spectroscopy with a vibrational transition density cube method. Physical Chemistry Chemical Physics : Pccp. 14: 14023-33. PMID 22990297 DOI: 10.1039/c2cp42593a  1
2012 Rodriguez JJ, Mukamel S. Probing ring currents in Mg-porphyrins by pump-probe spectroscopy. The Journal of Physical Chemistry. A. 116: 11095-100. PMID 22881200 DOI: 10.1021/jp3035874  1
2012 Biggs JD, Voll JA, Mukamel S. Coherent nonlinear optical studies of elementary processes in biological complexes: diagrammatic techniques based on the wave function versus the density matrix. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 370: 3709-27. PMID 22753822 DOI: 10.1098/rsta.2011.0219  1
2012 Rodriguez JJ, Mukamel S. Dissecting two-dimensional ultraviolet spectra of amyloid fibrils into beta-strand and turn contributions. The Journal of Physical Chemistry. B. 116: 8830-5. PMID 22738387 DOI: 10.1021/jp303956w  1
2012 Greve C, Preketes NK, Costard R, Koeppe B, Fidder H, Nibbering ET, Temps F, Mukamel S, Elsaesser T. N-H stretching modes of adenosine monomer in solution studied by ultrafast nonlinear infrared spectroscopy and ab initio calculations. The Journal of Physical Chemistry. A. 116: 7636-44. PMID 22724894 DOI: 10.1021/jp303864m  1
2012 Roslyak O, Gumbs G, Mukamel S. Trapping photon-dressed Dirac electrons in a quantum dot studied by coherent two dimensional photon echo spectroscopy. The Journal of Chemical Physics. 136: 194106. PMID 22612079 DOI: 10.1063/1.4707182  1
2012 Biggs JD, Zhang Y, Healion D, Mukamel S. Two-dimensional stimulated resonance Raman spectroscopy of molecules with broadband x-ray pulses. The Journal of Chemical Physics. 136: 174117. PMID 22583220 DOI: 10.1063/1.4706899  1
2012 Abramavicius D, Nemeth A, Milota F, Sperling J, Mukamel S, Kauffmann HF. Weak exciton scattering in molecular nanotubes revealed by double-quantum two-dimensional electronic spectroscopy. Physical Review Letters. 108: 067401. PMID 22401120 DOI: 10.1103/PhysRevLett.108.067401  1
2012 Falvo C, Zhuang W, Kim YS, Axelsen PH, Hochstrasser RM, Mukamel S. Frequency distribution of the amide-I vibration sorted by residues in amyloid fibrils revealed by 2D-IR measurements and simulations. The Journal of Physical Chemistry. B. 116: 3322-30. PMID 22338639 DOI: 10.1021/jp2096423  1
2012 Harbola U, Rahav S, Mukamel S. Quantum heat engines: A thermodynamic analysis of power and efficiency Epl. 99. DOI: 10.1209/0295-5075/99/50005  1
2012 Schlosser F, Schoth M, Hiremath K, Burger S, Schmidt F, Knorr A, Mukamel S, Richter M. Combining nanooptical fields and coherent spectroscopy on systems with delocalized excitons Proceedings of Spie - the International Society For Optical Engineering. 8260. DOI: 10.1117/12.906671  1
2012 Fingerhut BP, Richter M, Luo JW, Zunger A, Mukamel S. Dissecting biexciton wave functions of self-assembled quantum dots by double-quantum-coherence optical spectroscopy Physical Review B - Condensed Matter and Materials Physics. 86. DOI: 10.1103/PhysRevB.86.235303  1
2012 Richter M, Schlosser F, Schoth M, Burger S, Schmidt F, Knorr A, Mukamel S. Reconstruction of the wave functions of coupled nanoscopic emitters using a coherent optical technique Physical Review B - Condensed Matter and Materials Physics. 86. DOI: 10.1103/PhysRevB.86.085308  1
2012 Rahav S, Harbola U, Mukamel S. Heat fluctuations and coherences in a quantum heat engine Physical Review a - Atomic, Molecular, and Optical Physics. 86. DOI: 10.1103/PhysRevA.86.043843  1
2012 Healion D, Biggs JD, Mukamel S. Manipulating one- and two-dimensional stimulated-x-ray resonant-Raman signals in molecules by pulse polarizations Physical Review a - Atomic, Molecular, and Optical Physics. 86. DOI: 10.1103/PhysRevA.86.033429  1
2012 Schlawin F, Dorfman KE, Fingerhut BP, Mukamel S. Manipulation of two-photon-induced fluorescence spectra of chromophore aggregates with entangled photons: A simulation study Physical Review a - Atomic, Molecular, and Optical Physics. 86. DOI: 10.1103/PhysRevA.86.023851  1
2012 Dorfman KE, Mukamel S. Photon coincidence counting in parametric down-conversion: Interference of field-matter quantum pathways Physical Review a - Atomic, Molecular, and Optical Physics. 86. DOI: 10.1103/PhysRevA.86.023805  1
2012 Dorfman KE, Mukamel S. Nonlinear spectroscopy with time- and frequency-gated photon counting: A superoperator diagrammatic approach Physical Review a - Atomic, Molecular, and Optical Physics. 86. DOI: 10.1103/PhysRevA.86.013810  1
2012 Mukamel S. Quantum chemistry: A lightning-fast change Nature Physics. 8: 179-180. DOI: 10.1038/nphys2226  1
2012 Roslyak O, Aparajita U, Birman JL, Mukamel S. Coherent manipulation of quadrupole biexcitons in cuprous oxide by 2D femtosecond spectroscopy Physica Status Solidi (B) Basic Research. 249: 435-447. DOI: 10.1002/pssb.201147402  1
2012 Schlosser F, Schoth M, Burger S, Schmidt F, Knorr A, Mukamel S, Richter M. Coherent nonlinear spectroscopy with spatiotemporally controlled fields 2012 Conference On Lasers and Electro-Optics, Cleo 2012 1
2012 Mukamel S, Biggs JD, Zhang Y, Healion DM. Multidimensional stimulated resonant raman x-ray spectroscopy of molecules International Conference On Ultrafast Structural Dynamics, Icusd 2012 1
2011 Garbacik ET, Korterik JP, Otto C, Mukamel S, Herek JL, Offerhaus HL. Background-free nonlinear microspectroscopy with vibrational molecular interferometry. Physical Review Letters. 107: 253902. PMID 22243075 DOI: 10.1117/12.908158  1
2011 Panitchayangkoon G, Voronine DV, Abramavicius D, Caram JR, Lewis NH, Mukamel S, Engel GS. Direct evidence of quantum transport in photosynthetic light-harvesting complexes. Proceedings of the National Academy of Sciences of the United States of America. 108: 20908-12. PMID 22167798 DOI: 10.1073/pnas.1105234108  1
2011 Šanda F, Mukamel S. Novel coherent two-dimensional optical spectroscopy probes of chirality exchange and fluctuations in molecules. The Journal of Chemical Physics. 135: 194201. PMID 22112074 DOI: 10.1063/1.3658277  1
2011 Burnham CJ, Hayashi T, Napoleon RL, Keyes T, Mukamel S, Reiter GF. The proton momentum distribution in strongly H-bonded phases of water: a critical test of electrostatic models. The Journal of Chemical Physics. 135: 144502. PMID 22010722 DOI: 10.1063/1.3649679  1
2011 Ren H, Jiang J, Mukamel S. Deep UV resonance Raman spectroscopy of β-sheet amyloid fibrils: a QM/MM simulation. The Journal of Physical Chemistry. B. 115: 13955-62. PMID 22007849 DOI: 10.1021/jp207849u  1
2011 Lam AR, Jiang J, Mukamel S. Distinguishing amyloid fibril structures in Alzheimer's disease (AD) by two-dimensional ultraviolet (2DUV) spectroscopy. Biochemistry. 50: 9809-16. PMID 21961527 DOI: 10.1021/bi201317c  1
2011 Abramavicius D, Mukamel S. Exciton dynamics in chromophore aggregates with correlated environment fluctuations. The Journal of Chemical Physics. 134: 174504. PMID 21548696 DOI: 10.1063/1.3579455  1
2011 Mukamel S, Biggs JD. Communication: Comment on the effective temporal and spectral resolution of impulsive stimulated Raman signals. The Journal of Chemical Physics. 134: 161101. PMID 21528943 DOI: 10.1063/1.3581889  1
2011 Jiang J, Mukamel S. Probing amyloid fibril growth by two-dimensional near-ultraviolet spectroscopy. The Journal of Physical Chemistry. B. 115: 6321-8. PMID 21517033 DOI: 10.1021/jp201164u  1
2011 Voronine DV, Abramavicius D, Mukamel S. Coherent control protocol for separating energy-transfer pathways in photosynthetic complexes by chiral multidimensional signals. The Journal of Physical Chemistry. A. 115: 4624-9. PMID 21495702 DOI: 10.1021/jp111555h  1
2011 Healion D, Wang H, Mukamel S. Simulation and visualization of attosecond stimulated x-ray Raman spectroscopy signals in trans-N-methylacetamide at the nitrogen and oxygen K-edges. The Journal of Chemical Physics. 134: 124101. PMID 21456639 DOI: 10.1063/1.3557057  1
2011 Nagata Y, Mukamel S. Spectral diffusion at the water/lipid interface revealed by two-dimensional fourth-order optical spectroscopy: a classical simulation study. Journal of the American Chemical Society. 133: 3276-9. PMID 21329386 DOI: 10.1021/ja110748s  1
2011 Jiang J, Mukamel S. Two-dimensional near-ultraviolet spectroscopy of aromatic residues in amyloid fibrils: a first principles study. Physical Chemistry Chemical Physics : Pccp. 13: 2394-400. PMID 21132201 DOI: 10.1039/c0cp02047h  1
2011 Richter M, Mukamel S. Collective two-particle resonances induced by photon entanglement Physical Review a - Atomic, Molecular, and Optical Physics. 83. DOI: 10.1103/PhysRevA.83.063805  1
2011 Mukamel S, Richter M. Multidimensional phase-sensitive single-molecule spectroscopy with time-and-frequency-gated fluorescence detection Physical Review a - Atomic, Molecular, and Optical Physics. 83. DOI: 10.1103/PhysRevA.83.013815  1
2011 Schlosser F, Schoth M, Burger S, Schmidt F, Knorr A, Mukamel S, Richter M. Ultrafast nonlinear spectroscopy with spatially confined fields Aip Conference Proceedings. 1398: 94-96. DOI: 10.1063/1.3644223  1
2011 Mukamel S, Nagata Y. Quantum field, interference, and entanglement effects in nonlinear optical spectroscopy Procedia Chemistry. 3: 132-151. DOI: 10.1016/j.proche.2011.08.020  1
2011 Mukamel S, Voronine DV, Abramavicius D, Jiang J. Electronic coherence and structure of biological aggregates probed by coherent multidimensional spectroscopy Optics Infobase Conference Papers 1
2010 Richter M, Mukamel S. Ultrafast double-quantum-coherence spectroscopy of excitons with entangled photons. Physical Review. A. 28: 138201-138207. PMID 21804748 DOI: 10.1103/PhysRevA.82.013820  1
2010 Palmieri B, Nagata Y, Mukamel S. Phase-space algorithm for simulating quantum nonlinear response functions of bosons using stochastic classical trajectories. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 82: 046706. PMID 21230411 DOI: 10.1103/PhysRevE.82.046706  1
2010 Rahav S, Mukamel S. Multidimensional optical spectroscopy of a single molecule in a current-carrying state. The Journal of Chemical Physics. 133: 244106. PMID 21197975 DOI: 10.1063/1.3517218  1
2010 Jiang J, Mukamel S. Two-dimensional ultraviolet (2DUV) spectroscopic tools for identifying fibrillation propensity of protein residue sequences. Angewandte Chemie (International Ed. in English). 49: 9666-9. PMID 21077077 DOI: 10.1002/anie.201005093  1
2010 Abramavicius D, Mukamel S. Energy-transfer and charge-separation pathways in the reaction center of photosystem II revealed by coherent two-dimensional optical spectroscopy. The Journal of Chemical Physics. 133: 184501. PMID 21073225 DOI: 10.1063/1.3493580  1
2010 Roslyak O, Gumbs G, Mukamel S. Two-photon-coincidence fluorescence spectra of cavity multipolaritons: novel signatures of multiexciton generation. Nano Letters. 10: 4253-9. PMID 20882965 DOI: 10.1021/nl1020969  1
2010 Zhuang W, Sgourakis NG, Li Z, Garcia AE, Mukamel S. Discriminating early stage A{beta}42 monomer structures using chirality-induced 2DIR spectroscopy in a simulation study. Proceedings of the National Academy of Sciences of the United States of America. 107: 15687-92. PMID 20798063 DOI: 10.1073/pnas.1002131107  1
2010 Jiang J, Abramavicius D, Falvo C, Bulheller BM, Hirst JD, Mukamel S. Simulation of two-dimensional ultraviolet spectroscopy of amyloid fibrils. The Journal of Physical Chemistry. B. 114: 12150-6. PMID 20795695 DOI: 10.1021/jp1046968  1
2010 Abramavicius D, Mukamel S. Quantum oscillatory exciton migration in photosynthetic reaction centers. The Journal of Chemical Physics. 133: 064510. PMID 20707578 DOI: 10.1063/1.3458824  1
2010 Sperling J, Nemeth A, Hauer J, Abramavicius D, Mukamel S, Kauffmann HF, Milota F. Excitons and disorder in molecular nanotubes: a 2D electronic spectroscopy study and first comparison to a microscopic model. The Journal of Physical Chemistry. A. 114: 8179-89. PMID 20701329 DOI: 10.1021/jp102173n  1
2010 Sanda F, Perlík V, Mukamel S. Exciton coherence length fluctuations in chromophore aggregates probed by multidimensional optical spectroscopy. The Journal of Chemical Physics. 133: 014102. PMID 20614954 DOI: 10.1063/1.3442415  1
2010 Mukamel S. Communications: Signatures of quasiparticle entanglement in multidimensional nonlinear optical spectroscopy of aggregates. The Journal of Chemical Physics. 132: 241105. PMID 20590174 DOI: 10.1063/1.3454657  1
2010 Jiang J, Abramavicius D, Bulheller BM, Hirst JD, Mukamel S. Ultraviolet spectroscopy of protein backbone transitions in aqueous solution: combined QM and MM simulations. The Journal of Physical Chemistry. B. 114: 8270-7. PMID 20503991 DOI: 10.1021/jp101980a  1
2010 Abramavicius D, Jiang J, Bulheller BM, Hirst JD, Mukamel S. Simulation study of chiral two-dimensional ultraviolet spectroscopy of the protein backbone. Journal of the American Chemical Society. 132: 7769-75. PMID 20481498 DOI: 10.1021/ja101968g  1
2010 Nagata Y, Mukamel S. Vibrational sum-frequency generation spectroscopy at the water/lipid interface: molecular dynamics simulation study. Journal of the American Chemical Society. 132: 6434-42. PMID 20394423 DOI: 10.1021/ja100508n  1
2010 Karaiskaj D, Bristow AD, Yang L, Dai X, Mirin RP, Mukamel S, Cundiff ST. Two-quantum many-body coherences in two-dimensional fourier-transform spectra of exciton resonances in semiconductor quantum wells. Physical Review Letters. 104: 117401. PMID 20366499 DOI: 10.1103/PhysRevLett.104.117401  1
2010 Marai CNj, Mukamel S, Wang J. Probing the folding of mini-protein Beta3s by two-dimensional infrared spectroscopy; simulation study. Pmc Biophysics. 3: 8. PMID 20302645 DOI: 10.1186/1757-5036-3-8  1
2010 Rahav S, Mukamel S. Stimulated coherent anti-Stokes Raman spectroscopy (CARS) resonances originate from double-slit interference of two-photon Stokes pathways Proceedings of the National Academy of Sciences of the United States of America. 107: 4825-4829. PMID 20185757 DOI: 10.1073/pnas.0910120107  1
2010 Yan S, Kang S, Hayashi T, Mukamel S, Lee JY. Computational studies on electron and proton transfer in phenol-imidazole-base triads Journal of Computational Chemistry. 31: 393-402. PMID 19479733 DOI: 10.1002/jcc21339  1
2010 Yang L, Mukamel S. Probing many particle correlations in semiconductor quantum wells using double-quantum-coherence signal Proceedings of Spie - the International Society For Optical Engineering. 7600. DOI: 10.1117/12.840993  1
2010 Rahav S, Mukamel S. Multidimensional measures of impulsively driven stochastic systems based on the Kullback-Leibler distance Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 81. DOI: 10.1103/PhysRevE.81.031116  1
2010 Polli D, Brida D, Mukamel S, Lanzani G, Cerullo G. Effective temporal resolution in pump-probe spectroscopy with strongly chirped pulses Physical Review a - Atomic, Molecular, and Optical Physics. 82. DOI: 10.1103/PhysRevA.82.053809  1
2010 Rahav S, Mukamel S. Multidimensional attosecond photoelectron spectroscopy with shaped pulses and quantum optical fields Physical Review a - Atomic, Molecular, and Optical Physics. 81. DOI: 10.1103/PhysRevA.81.063810  1
2010 Mukamel S, Wang H. Manipulating quantum entanglement of quasiparticles in many-electron systems by attosecond x-ray pulses Physical Review a - Atomic, Molecular, and Optical Physics. 81. DOI: 10.1103/PhysRevA.81.062334  1
2010 Yang L, Abramavicius D, Mukamel S. Signatures of three-exciton correlations in the coherent and incoherent nonlinear optical response of photosynthetic complexes New Journal of Physics. 12. DOI: 10.1088/1367-2630/12/6/065046  1
2010 Roslyak O, Gumbs G, Mukamel S. Signatures of carrier multiplication in the frequency resolved fluorescence spectra from polaritons Journal of Modern Optics. 57: 2009-2019. DOI: 10.1080/09500340.2010.499048  1
2010 Richter M, Mukamel S. Relaxation processes in systems strongly coupled to a harmonic bath Journal of Modern Optics. 57: 2004-2008. DOI: 10.1080/09500340.2010.499044  1
2010 Mukamel S, Rahav S, Wang H. Stimulated Raman spectroscopy with femtosecond optical or attosecond x-ray pulses Aip Conference Proceedings. 1267: 109-110. DOI: 10.1063/1.3482318  1
2010 Palmieri B, Abramavicius D, Mukamel S. Interplay of slow bath fluctuations and energy transfer in 2D spectroscopy of the FMO light-harvesting complex: Benchmarking of simulation protocols Physical Chemistry Chemical Physics. 12: 108-114. DOI: 10.1039/b916723d  1
2010 Mukamel S, Rahav S. Ultrafast Nonlinear Optical Signals Viewed from the Molecule's Perspective: Kramers-Heisenberg Transition-Amplitudes versus Susceptibilities Advances in Atomic, Molecular and Optical Physics. 59: 223-263. DOI: 10.1016/S1049-250X(10)59006-2  1
2010 Jiang J, Mukamel S. Two dimensional ultraviolet spectroscopy of proteins and amyloid fibrils Optics Infobase Conference Papers 1
2010 Voronine DV, Abramavicius D, Mukamel S. Coherent control of multidimensional nonlinear optical signals with shaped laser pulses Optics Infobase Conference Papers 1
2010 Karaiskaj D, Bristow AD, Dai X, Yang L, Mukamel S, Mirin RP, Cundiff ST. Many-body two-quantum coherences in 2D fourier-transform spectra of semiconductors Optics Infobase Conference Papers 1
2010 Abramavicius D, Mukamel S. Signatures of quantum exciton transport in two-dimensional coherent optical signals of photosynthetic complexes Optics Infobase Conference Papers 1
2010 Cundiff ST, Karaiskaj D, Dai X, Yang L, Bristow AD, Richter M, Mirin RP, Mukamel S. Two-quantum coherences in optical two-dimensional ourier transform spectroscopy Optics Infobase Conference Papers 1
2009 Roslyak O, Marx CA, Mukamel S. Generalized Kramers-Heisenberg expressions for stimulated Raman scattering and two-photon absorption. Physical Review. A. 79: 638271-6382712. PMID 20613889 DOI: 10.1103/PhysRevA.79.063827  1
2009 Roslyak O, Mukamel S. A unified description of sum frequency generation, parametric down conversion and two-photon fluorescence. Molecular Physics. 107: 265-280. PMID 20607143 DOI: 10.1080/00268970902824250  1
2009 Rahav S, Roslyak O, Mukamel S. Manipulating stimulated coherent anti-Stokes Raman spectroscopy signals by broad-band and narrow-band pulses Journal of Chemical Physics. 131. PMID 19929063 DOI: 10.1063/1.3259653  1
2009 Sengupta N, Maekawa H, Zhuang W, Toniolo C, Mukamel S, Tobias DJ, Ge NH. Sensitivity of 2D IR spectra to peptide helicity: a concerted experimental and simulation study of an octapeptide. The Journal of Physical Chemistry. B. 113: 12037-49. PMID 19496555 DOI: 10.1021/jp901504r  1
2009 Zhuang W, Hayashi T, Mukamel S. Coherent multidimensional vibrational spectroscopy of biomolecules: concepts, simulations, and challenges. Angewandte Chemie (International Ed. in English). 48: 3750-81. PMID 19415637 DOI: 10.1002/anie.200802644  0.92
2009 Mukamel S, Abramavicius D, Yang L, Zhuang W, Schweigert IV, Voronine DV. Coherent multidimensional optical probes for electron correlations and exciton dynamics: from NMR to X-rays. Accounts of Chemical Research. 42: 553-62. PMID 19323494 DOI: 10.1021/ar800258z  0.92
2009 Esposito M, Harbola U, Mukamel S. Nonequilibrium fluctuations, fluctuation theorems, and counting statistics in quantum systems Reviews of Modern Physics. 81: 1665-1702. DOI: 10.1103/RevModPhys.81.1665  1
2009 Dai X, Bristow AD, Karaiskaj D, Mukamel S, Cundiff ST. Two-quantum resonances observed in potassium vapor by two-dimensional Fourier-transform spectroscopy 2009 Conference On Lasers and Electro-Optics and 2009 Conference On Quantum Electronics and Laser Science Conference, Cleo/Qels 2009 1
2008 Healion DM, Schweigert IV, Mukamel S. Probing multiple core-hole interactions in the nitrogen K-edge of DNA base pairs by multidimensional attosecond X-ray spectroscopy. A simulation study. The Journal of Physical Chemistry. A. 112: 11449-61. PMID 18928268 DOI: 10.1021/jp803824a  1
2008 Falvo C, Hayashi T, Zhuang W, Mukamel S. Coherent two dimensional infrared spectroscopy of a cyclic decapeptide antamanide. A simulation study of the amide-I and A bands. The Journal of Physical Chemistry. B. 112: 12479-90. PMID 18781709 DOI: 10.1021/jp801493y  0.92
2008 Li Z, Yu H, Zhuang W, Mukamel S. Geometry and Excitation Energy Fluctuations of NMA in Aqueous Solution with CHARMM, AMBER, OPLS, and GROMOS Force Fields: Implications for Protein Ultraviolet Spectra Simulation. Chemical Physics Letters. 452: 78-83. PMID 18438457 DOI: 10.1016/j.cplett.2007.12.022  1
2008 Lorenz VO, Mukamel S, Zhuang W, Cundiff ST. Ultrafast optical spectroscopy of spectral fluctuations in a dense atomic vapor. Physical Review Letters. 100: 013603. PMID 18232760 DOI: 10.1103/PhysRevLett.100.013603  1
2008 Wang J, Zhuang W, Mukamel S, Hochstrasser R. Two-dimensional infrared spectroscopy as a probe of the solvent electrostatic field for a twelve residue peptide. The Journal of Physical Chemistry. B. 112: 5930-7. PMID 18078331 DOI: 10.1021/jp075683k  1
2007 Li Z, Abramavicius D, Zhuang W, Mukamel S. Two Dimensional Electronic Correlation Spectroscopy of the npi* and pipi* Protein Backbone Transitions: A Simulation Study. Chemical Physics. 341: 29-36. PMID 19011677 DOI: 10.1016/j.chemphys.2007.03.029  0.92
2007 Volkov VV, Chelli R, Zhuang W, Nuti F, Takaoka Y, Papini AM, Mukamel S, Righini R. Electrostatic interactions in phospholipid membranes revealed by coherent 2D IR spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 104: 15323-7. PMID 17881567 DOI: 10.1073/pnas.0706426104  0.92
2007 Zhuang W, Abramavicius D, Voronine DV, Mukamel S. Simulation of two-dimensional infrared spectroscopy of amyloid fibrils. Proceedings of the National Academy of Sciences of the United States of America. 104: 14233-6. PMID 17675411 DOI: 10.1073/pnas.0700392104  0.92
2006 Zhuang W, Abramavicius D, Mukamel S. Two-dimensional vibrational optical probes for peptide fast folding investigation. Proceedings of the National Academy of Sciences of the United States of America. 103: 18934-8. PMID 17146054 DOI: 10.1073/pnas.0606912103  0.92
2006 Moran AM, Maddox JB, Hong JW, Kim J, Nome RA, Bazan GC, Mukamel S, Scherer NF. Optical coherence and theoretical study of the excitation dynamics of a highly symmetric cyclophane-linked oligophenylenevinylene dimer. The Journal of Chemical Physics. 124: 194904. PMID 16729841 DOI: 10.1063/1.2196041  1
2006 Zhuang W, Abramavicius D, Hayashi T, Mukamel S. Simulation protocols for coherent femtosecond vibrational spectra of peptides. The Journal of Physical Chemistry. B. 110: 3362-74. PMID 16494351 DOI: 10.1021/jp055813u  0.92
2005 Venkatramani R, Mukamel S. Dephasing-induced vibronic resonances in difference frequency generation spectroscopy. The Journal of Physical Chemistry. B. 109: 8132-43. PMID 16851951 DOI: 10.1021/jp0446682  1
2005 Hayashi T, la Cour Jansen T, Zhuang W, Mukamel S. Collective solvent coordinates for the infrared spectrum of HOD in D2O based on an ab initio electrostatic map. The Journal of Physical Chemistry. A. 109: 64-82. PMID 16839090 DOI: 10.1021/jp046685x  0.92
2005 Hayashi T, Zhuang W, Mukamel S. Electrostatic DFT map for the complete vibrational amide band of NMA. The Journal of Physical Chemistry. A. 109: 9747-59. PMID 16833288 DOI: 10.1021/jp052324l  0.92
2005 Jansen Tl, Hayashi T, Zhuang W, Mukamel S. Stochastic Liouville equations for hydrogen-bonding fluctuations and their signatures in two-dimensional vibrational spectroscopy of water. The Journal of Chemical Physics. 123: 114504. PMID 16392570 DOI: 10.1016/j.rhum.2014.07.007  0.88
2005 Mukamel S, Zhuang W. Coherent femtosecond multidimensional probes of molecular vibrations. Proceedings of the National Academy of Sciences of the United States of America. 102: 13717-8. PMID 16172375 DOI: 10.1073/pnas.0506874102  0.92
2005 Zhuang W, Abramavicius D, Mukamel S. Dissecting coherent vibrational spectra of small proteins into secondary structural elements by sensitivity analysis. Proceedings of the National Academy of Sciences of the United States of America. 102: 7443-8. PMID 15894625 DOI: 10.1073/pnas.0408781102  0.92
2004 Jansen Tl, Zhuang W, Mukamel S. Stochastic Liouville equation simulation of multidimensional vibrational line shapes of trialanine. The Journal of Chemical Physics. 121: 10577-98. PMID 15549941 DOI: 10.1063/1.1807824  0.92
2003 Cohen AE, Mukamel S. Resonant enhancement and dissipation in nonequilibrium van der Waals forces. Physical Review Letters. 91: 233202. PMID 14683180  1
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