Ira Herskowitz - Related publications

1981-2003 Biochemistry and biophysics University of California, San Francisco, San Francisco, CA 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Zhao F, Yang J, Li J, Li Z, Lin Y, Zheng S, Liang S, Han S. Multiple cellular responses guarantee yeast survival in presence of the cell membrane/wall interfering agent sodium dodecyl sulfate. Biochemical and Biophysical Research Communications. 527: 276-282. PMID 32446380 DOI: 10.1016/j.bbrc.2020.03.163   
2020 Hou B, Zhang Z, Zhou J, Zheng F, Li M. Ste20 is crucial for dimorphic switching of sporothrix schenckii and affects its global transcriptome. International Journal of Clinical and Experimental Pathology. 13: 411-424. PMID 32269678   
2020 Rogers AK, Phillips CM. RNAi pathways repress reprogramming of C. elegans germ cells during heat stress. Nucleic Acids Research. PMID 32187370 DOI: 10.1093/nar/gkaa174   
2020 Luppino JM, Joyce EF. Single cell analysis pushes the boundaries of TAD formation and function. Current Opinion in Genetics & Development. 61: 25-31. PMID 32302920 DOI: 10.1016/j.gde.2020.03.005   
2020 Nieto CA, Vargas Garcia CA, Sanchez C, Arias-Castro JC, Pedraza JM. Correlation between protein concentration and bacterial cell size can reveal strategies of gene expression. Physical Biology. PMID 32289764 DOI: 10.1088/1478-3975/ab891c   
2020 Hou X, Jiang M, Zhou J, Song S, Zhao F, Lin Y. Examination of methionine stimulation of gene expression in dairy cow mammary epithelial cells using RNA-sequencing. The Journal of Dairy Research. 1-6. PMID 32375921 DOI: 10.1017/S0022029920000199   
2020 Mouawad R, Himadewi P, Kadiyala D, Arnosti DN. Selective repression of the Drosophila cyclin B promoter by retinoblastoma and E2F proteins. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 1863: 194549. PMID 32275964 DOI: 10.1016/j.bbagrm.2020.194549   
2020 Warman C, Panda K, Vejlupkova Z, Hokin S, Unger-Wallace E, Cole RA, Chettoor AM, Jiang D, Vollbrecht E, Evans MMS, Slotkin RK, Fowler JE. High expression in maize pollen correlates with genetic contributions to pollen fitness as well as with coordinated transcription from neighboring transposable elements. Plos Genetics. 16: e1008462. PMID 32236090 DOI: 10.1371/journal.pgen.1008462   
2020 Shao W, Cai Q, Tong SM, Ying SH, Feng MG. Nuclear Ssr4 Is Required for the and Asexual Cycles and Global Gene Activity of Beauveria bassiana. Msystems. 5. PMID 32317391 DOI: 10.1128/mSystems.00677-19   
2020 Devia J, Bastías C, Kessi-Pérez EI, Villarroel CA, De Chiara M, Cubillos FA, Liti G, Martínez C, Salinas F. Transcriptional Activity and Protein Levels of Horizontally Acquired Genes in Yeast Reveal Hallmarks of Adaptation to Fermentative Environments. Frontiers in Genetics. 11: 293. PMID 32425968 DOI: 10.3389/fgene.2020.00293   
2020 Wen W, Song S, Han Y, Chen H, Liu X, Qian Q. An efficient Screening System in Yeast to Select a Hyperactive Transposase for Mammalian Applications. International Journal of Molecular Sciences. 21. PMID 32357554 DOI: 10.3390/ijms21093064   
2020 Yarrington RM, Yu Y, Yan C, Bai L, Stillman DJ. Independent Recruitment of the Mediator Tail Module to the Promoter Suggests Mediator Core Limits Coactivator Recruitment in . Genetics. PMID 32327563 DOI: 10.1534/genetics.120.303254   
2020 Han X, Yang J, Zeng F, Weng J, Zhang Y, Peng Q, Shen L, Ding S, Liu K, Gao Y. Programmable Synthetic Protein Circuits for the Identification and Suppression of Hepatocellular Carcinoma. Molecular Therapy Oncolytics. 17: 70-82. PMID 32322664 DOI: 10.1016/j.omto.2020.03.008   
2020 Luo R, Zhao Y, Fan Y, An L, Jiang T, Ma S, Hang H. High efficiency CHO cell display-based antibody maturation. Scientific Reports. 10: 8102. PMID 32415149 DOI: 10.1038/s41598-020-65044-7   
2020 Bravo González-Blas C, Quan XJ, Duran-Romaña R, Taskiran II, Koldere D, Davie K, Christiaens V, Makhzami S, Hulselmans G, de Waegeneer M, Mauduit D, Poovathingal S, Aibar S, Aerts S. Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics. Molecular Systems Biology. 16: e9438. PMID 32431014 DOI: 10.15252/msb.20209438   
2020 Wu T, Zhang Z, Hu C, Zhang L, Wei S, Li S. A WD40 Protein Encoding Gene Positively Regulates Mushroom Development and Yield in . Frontiers in Microbiology. 11: 498. PMID 32273873 DOI: 10.3389/fmicb.2020.00498   
2020 Yu B, Wang Y, Zhou H, Li P, Liu C, Chen S, Peng Y, Zhang Y, Teng S. Genome-wide binding analysis reveals that ANAC060 directly represses sugar-induced ABI5 transcription in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. PMID 32314488 DOI: 10.1111/tpj.14777   
2020 Ko YH, Choi SY, So KK, Kim JM, Chun J, Kim DH. Functional analysis of an essential Ran-binding protein gene, CpRbp1, from the chestnut blight fungus Cryphonectria parasitica using heterokaryon rescue. Scientific Reports. 10: 8111. PMID 32415177 DOI: 10.1038/s41598-020-65036-7   
2020 Borriello G, Russo V, Paradiso R, Riccardi MG, Criscuolo D, Verde G, Marasco R, Pedone PV, Galiero G, Baglivo I. Different Impacts of MucR Binding to the and Promoters on Gene Expression in 2308. Biomolecules. 10. PMID 32438765 DOI: 10.3390/biom10050788   
2020 Manouchehri N, Hussain RZ, Cravens PD, Doelger R, Greenberg BM, Okuda DT, Forsthuber TG, Eagar TN, Stüve O. Limitations of cell-lineage-specific non-dynamic gene recombination in CD11c.CreITGA4 mice. Journal of Neuroimmunology. 344: 577245. PMID 32335319 DOI: 10.1016/j.jneuroim.2020.577245   
2020 Li L, Huang K, Zhao H, Chen B, Ye Q, Yue J. CDK1-PLK1/SGOL2/ANLN pathway mediating abnormal cell division in cell cycle may be a critical process in hepatocellular carcinoma. Cell Cycle (Georgetown, Tex.). 1-17. PMID 32275843 DOI: 10.1080/15384101.2020.1749471   
2020 Shi L, Liu B, Wei Q, Ge B, Zhang K. Genome-wide transcriptomic analysis of the response of Botrytis cinerea to wuyiencin. Plos One. 15: e0224643. PMID 32348310 DOI: 10.1371/journal.pone.0224643   
2020 Song S, Yu KY, Zhang T, Lu R, Pan SQ, Zhou MM, Cheng Y. [Expression analysis of / double genes in transfected goat mammary epithelial cells]. Yi Chuan = Hereditas. 42: 380-387. PMID 32312707 DOI: 10.16288/j.yczz.19-299   
2020 Tondini F, Onetto CA, Jiranek V. Early adaptation strategies of Saccharomyces cerevisiae and Torulaspora delbrueckii to co-inoculation in high sugar grape must-like media. Food Microbiology. 90: 103463. PMID 32336354 DOI: 10.1016/   
2020 Yang J, Xu D, Yu W, Hao R, Wei J. Regulation of aureofuscin production by the PAS-LuxR family regulator AurJ3M. Enzyme and Microbial Technology. 137: 109532. PMID 32423669 DOI: 10.1016/j.enzmictec.2020.109532   
2020 Carnesecchi J, Lohmann I. Closing the gap: a roadmap to single-cell regulatory genomics. Molecular Systems Biology. 16: e9497. PMID 32430985 DOI: 10.15252/msb.20209497   
2020 Hoxha S, Shepard A, Troutman S, Diao H, Doherty JR, Janiszewska M, Witwicki RM, Pipkin ME, Ja WW, Kareta MS, Kissil JL. YAP-mediated recruitment of YY1 and EZH2 represses transcription of key cell cycle regulators. Cancer Research. PMID 32409309 DOI: 10.1158/0008-5472.CAN-19-2415   
2020 Hayden E, Chen S, Chumley A, Xia C, Zhong Q, Ju S. A Genetic Screen for Human Genes Suppressing FUS Induced Toxicity in Yeast. G3 (Bethesda, Md.). PMID 32276960 DOI: 10.1534/g3.120.401164   
2020 Sieriebriennikov B, Sun S, Lightfoot JW, Witte H, Moreno E, Rödelsperger C, Sommer RJ. Conserved nuclear hormone receptors controlling a novel plastic trait target fast-evolving genes expressed in a single cell. Plos Genetics. 16: e1008687. PMID 32282814 DOI: 10.1371/journal.pgen.1008687   
2020 Lafontaine GMF, Fish NM, Connerton IF. In Vitro Evaluation of the Effects of Commercial Prebiotic GOS and FOS Products on Human Colonic Caco-2 Cells. Nutrients. 12. PMID 32366023 DOI: 10.3390/nu12051281   
2020 Li J, Guo M, Cao Y, Xia Y. Disruption of a C69-Family Cysteine Dipeptidase Gene Enhances Heat Shock and UV-B Tolerances in . Frontiers in Microbiology. 11: 849. PMID 32431687 DOI: 10.3389/fmicb.2020.00849   
2020 Li J, Guo M, Cao Y, Xia Y. Disruption of a C69-Family Cysteine Dipeptidase Gene Enhances Heat Shock and UV-B Tolerances in . Frontiers in Microbiology. 11: 849. PMID 32431687 DOI: 10.3389/fmicb.2020.00849   
2020 Rambout X, Cho H, Maquat LE. Transcriptional Coactivator PGC-1α Binding to Newly Synthesized RNA via CBP80: A Nexus for Co- and Posttranscriptional Gene Regulation. Cold Spring Harbor Symposia On Quantitative Biology. PMID 32295928 DOI: 10.1101/sqb.2019.84.040212   
2020 Kim S, Park J, Kim T, Lee JS. The functional study of human proteins using humanized yeast. Journal of Microbiology (Seoul, Korea). 58: 343-349. PMID 32342338 DOI: 10.1007/s12275-020-0136-y   
2020 Huyan T, Peng H, Cai S, Li Q, Dong D, Yang Z, Shang P. Transcriptome Analysis Reveals the Negative Effect of 16 T High Static Magnetic Field on Osteoclastogenesis of RAW264.7 Cells. Biomed Research International. 2020: 5762932. PMID 32309435 DOI: 10.1155/2020/5762932   
2020 Vior NM, Cea-Torrescassana E, Eyles TH, Chandra G, Truman AW. Regulation of Bottromycin Biosynthesis Involves an Internal Transcriptional Start Site and a Cluster-Situated Modulator. Frontiers in Microbiology. 11: 495. PMID 32273872 DOI: 10.3389/fmicb.2020.00495   
2020 Mat Nanyan NSB, Takagi H. Proline Homeostasis in : How Does the Stress-Responsive Transcription Factor Msn2 Play a Role? Frontiers in Genetics. 11: 438. PMID 32411186 DOI: 10.3389/fgene.2020.00438   
2020 Carnesecchi J, Sigismondo G, Domsch K, Baader CEP, Rafiee MR, Krijgsveld J, Lohmann I. Multi-level and lineage-specific interactomes of the Hox transcription factor Ubx contribute to its functional specificity. Nature Communications. 11: 1388. PMID 32170121 DOI: 10.1038/s41467-020-15223-x   
2020 Jishage M, Ito K, Chu CS, Wang X, Yamaji M, Roeder RG. Transcriptional down-regulation of metabolic genes by Gdown1 ablation induces quiescent cell re-entry into the cell cycle. Genes & Development. PMID 32381628 DOI: 10.1101/gad.337683.120   
2020 Anwar M, Malhotra P, Kochhar R, Bhatia A, Mahmood A, Singh R, Mahmood S. TCF 4 tumor suppressor: a molecular target in the prognosis of sporadic colorectal cancer in humans. Cellular & Molecular Biology Letters. 25: 24. PMID 32265994 DOI: 10.1186/s11658-020-00217-w   
2020 Xu X, Yang J, Harvey-Samuel T, Huang Y, Asad M, Chen W, He W, Yang G, Alphey L, You M. Identification and characterization of the vasa gene in the diamondback moth, Plutella xylostella. Insect Biochemistry and Molecular Biology. 103371. PMID 32283279 DOI: 10.1016/j.ibmb.2020.103371   
2020 Feng W, Chen S, Wang J, Wang X, Chen H, Ning W, Zhang Y. DHX33 recruits Gadd45a to cause DNA demethylation and regulate a subset of gene transcription. Molecular and Cellular Biology. PMID 32312884 DOI: 10.1128/MCB.00460-19   
2020 Waseem NH, Low S, Shah AZ, Avisetti D, Ostergaard P, Simpson M, Niemiec KA, Martin-Martin B, Aldehlawi H, Usman S, Lee PS, Khawaja AP, Ruddle JB, Shah A, Sackey E, et al. Mutations in SPATA13/ASEF2 cause primary angle closure glaucoma. Plos Genetics. 16: e1008721. PMID 32339198 DOI: 10.1371/journal.pgen.1008721   
2020 Tietz KT, Gallagher TL, Mannings MC, Morrow ZT, Derr NL, Amacher SL. Pumilio response and AU-rich elements drive rapid decay of Pnrc2-regulated cyclic gene transcripts. Developmental Biology. PMID 32246943 DOI: 10.1016/j.ydbio.2020.03.017   
2020 Mair F, Erickson JR, Voillet V, Simoni Y, Bi T, Tyznik AJ, Martin J, Gottardo R, Newell EW, Prlic M. A Targeted Multi-omic Analysis Approach Measures Protein Expression and Low-Abundance Transcripts on the Single-Cell Level. Cell Reports. 31: 107499. PMID 32268080 DOI: 10.1016/j.celrep.2020.03.063   
2020 Dubois-Chevalier J, Dubois V, Staels B, Lefebvre P, Eeckhoute J. Perspectives on the use of super-enhancers as a defining feature of cell/tissue-identity genes. Epigenomics. PMID 32396464 DOI: 10.2217/epi-2019-0290   
2020 Gu B, Cao X, Zhou X, Chen Z, Wang Q, Liu W, Chen Q, Zhao H. The Histological, Effectoromic, and Transcriptomic Analyses of Reveal an Upregulation of Multiple Genes Suppressing Infection. International Journal of Molecular Sciences. 21. PMID 32370102 DOI: 10.3390/ijms21093211   
2020 Rolland S, Mengue L, Noël C, Crapart S, Mercier A, Aucher W, Héchard Y, Samba-Louaka A. Encystment Induces Down-Regulation of an Acetyltransferase-Like Gene in . Pathogens (Basel, Switzerland). 9. PMID 32357498 DOI: 10.3390/pathogens9050321   
2020 Li X, He Y, Hao C, Li X, Li X. Weighted Gene Correlation Network Analysis (WGCNA) Reveals Novel Regulatory Modules Associated with Recurrent Early Pregnancy Loss. Bioscience Reports. PMID 32401299 DOI: 10.1042/BSR20193938   
2020 Kanakoglou DS, Michalettou TD, Vasileiou C, Gioukakis E, Maneta D, Kyriakidis KV, Georgakilas AG, Michalopoulos I. Effects of High-Dose Ionizing Radiation in Human Gene Expression: A Meta-Analysis. International Journal of Molecular Sciences. 21. PMID 32178397 DOI: 10.3390/ijms21061938