August H. Doermann - Related publications

Biology University of Rochester, Rochester, NY 
T4 bacteriophage genetics
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Das D, Bristol ML, Pichierri P, Morgan IM. Using a Human Papillomavirus Model to Study DNA Replication and Repair of Wild Type and Damaged DNA Templates in Mammalian Cells. International Journal of Molecular Sciences. 21. PMID 33066318 DOI: 10.3390/ijms21207564   
2020 Ji J, Day A. Construction of a highly error-prone DNA polymerase for developing organelle mutation systems. Nucleic Acids Research. PMID 33135056 DOI: 10.1093/nar/gkaa929   
2020 Fantini D, Vidimar V, Yu Y, Condello S, Meeks JJ. MutSignatures: an R package for extraction and analysis of cancer mutational signatures. Scientific Reports. 10: 18217. PMID 33106540 DOI: 10.1038/s41598-020-75062-0   
2020 Gu S, Li J, Li S, Cao J, Bu J, Ren Y, Du W, Chen Z, Xu C, Wang M, Jiang L, Huang C, Du J. Efficient replacement of long DNA fragments via non-homologous end joining at non-coding regions. Journal of Molecular Cell Biology. PMID 33057691 DOI: 10.1093/jmcb/mjaa051   
2020 Sanders E, Nguyen PA, Rogers CM, Bochman ML. Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the RecQ Helicases Hrq1 and Sgs1. G3 (Bethesda, Md.). PMID 33115720 DOI: 10.1534/g3.120.401709   
2020 Tang M, Zhang M, Xia L, Yang Z, Yan S, Wang H, Wei D, Du C, Cui HL. Detection of single-base mutation of DNA oligonucleotides with different lengths by terahertz attenuated total reflection microfluidic cell. Biomedical Optics Express. 11: 5362-5372. PMID 33014620 DOI: 10.1364/BOE.400487   
2020 Zhang W, Ming Z, Chen N, Liu L, Liao Y, Xiao X, Wang H. An interlocked DNA cascade system for universal probe-based melting curve analysis. Nanoscale. PMID 33026003 DOI: 10.1039/d0nr04691d   
2020 Parry DA, Tamayo-Orrego L, Carroll P, Marsh JA, Greene P, Murina O, Uggenti C, Leitch A, , Káposzta R, Merő G, Nagy A, Orlik B, Kovács-Pászthy B, Quigley AJ, et al. PRIM1 deficiency causes a distinctive primordial dwarfism syndrome. Genes & Development. PMID 33060134 DOI: 10.1101/gad.340190.120   
2020 Rogers CM, Sanders E, Nguyen PA, Smith-Kinnaman W, Mosley AL, Bochman ML. The Genetic and Physical Interactomes of the Hrq1 Helicase. G3 (Bethesda, Md.). PMID 33115721 DOI: 10.1534/g3.120.401864   
2020 Majumder K, Boftsi M, Whittle FB, Wang J, Fuller MS, Joshi T, Pintel DJ. The NS1 protein of the parvovirus MVM Aids in the localization of the viral genome to cellular sites of DNA damage. Plos Pathogens. 16: e1009002. PMID 33064772 DOI: 10.1371/journal.ppat.1009002   
2020 Li Y, Salo-Mullen E, Varghese A, Trottier M, Stadler ZK, Zhang L. Insertion of an Alu-like element in MLH1 intron 7 as a novel cause of Lynch syndrome. Molecular Genetics & Genomic Medicine. e1523. PMID 33058565 DOI: 10.1002/mgg3.1523   
2020 Stantial N, Rogojina A, Gilbertson M, Sun Y, Miles H, Shaltz S, Berger J, Nitiss KC, Jinks-Robertson S, Nitiss JL. Trapped topoisomerase II initiates formation of de novo duplications via the nonhomologous end-joining pathway in yeast. Proceedings of the National Academy of Sciences of the United States of America. PMID 33046655 DOI: 10.1073/pnas.2008721117   
2020 Sallmyr A, Rashid I, Bhandari SK, Naila T, Tomkinson AE. Human DNA ligases in replication and repair. Dna Repair. 93: 102908. PMID 33087274 DOI: 10.1016/j.dnarep.2020.102908   
2020 Zhang Y, Mu F, Duan Y, Li Q, Pan Y, Du H, He P, Shen X, Luo Z, Zhu C, Wang L. Label-Free Analysis of H5N1 Virus Based on Three-Segment Branched DNA-Templated Fluorescent Silver Nanoclusters. Acs Applied Materials & Interfaces. PMID 33052659 DOI: 10.1021/acsami.0c14509   
2020 Sullivan ED, Longley MJ, Copeland WC. Polymerase γ efficiently replicates through many natural template barriers but stalls at the HSP1 quadruplex. The Journal of Biological Chemistry. PMID 33077518 DOI: 10.1074/jbc.RA120.015390   
2020 Kantor A, McClements ME, MacLaren RE. CRISPR-Cas9 DNA Base-Editing and Prime-Editing. International Journal of Molecular Sciences. 21. PMID 32872311 DOI: 10.3390/ijms21176240   
2020 Kantor A, McClements ME, MacLaren RE. CRISPR-Cas9 DNA Base-Editing and Prime-Editing. International Journal of Molecular Sciences. 21. PMID 32872311 DOI: 10.3390/ijms21176240   
2020 Kota S, Chaudhary R, Mishra S, Misra HS. Topoisomerase IB interacts with genome segregation proteins and is involved in multipartite genome maintenance in Deinococcus radiodurans. Microbiological Research. 242: 126609. PMID 33059113 DOI: 10.1016/j.micres.2020.126609   
2020 Gallagher DN, Pham N, Tsai AM, Janto AN, Choi J, Ira G, Haber JE. A Rad51-independent pathway promotes single-strand template repair in gene editing. Plos Genetics. 16: e1008689. PMID 33057349 DOI: 10.1371/journal.pgen.1008689   
2020 Rosenberg S, Okamura R, Kato S, Soussi T, Kurzrock R. Survival implications of the relationship between tissue versus circulating tumor DNA TP53 mutations - a perspective from a real-world precision medicine cohort. Molecular Cancer Therapeutics. PMID 32999047 DOI: 10.1158/1535-7163.MCT-20-0097   
2020 Gurung D, Blumenthal RM. Distribution of RecBCD and AddAB recombination-associated genes among bacteria in 33 phyla. Microbiology (Reading, England). PMID 33085588 DOI: 10.1099/mic.0.000980   
2020 Hu Y, Tareen A, Sheu YJ, Ireland WT, Speck C, Li H, Joshua-Tor L, Kinney JB, Stillman B. Evolution of DNA replication origin specification and gene silencing mechanisms. Nature Communications. 11: 5175. PMID 33056978 DOI: 10.1038/s41467-020-18964-x   
2020 Rojas MF, König GA, Vagnozzi AE, Vera FS, Scolaro LA, Craig MI. Optimization and application of a high-resolution melting protocol in the characterization of avian infectious laryngotracheitis virus. Revista Argentina De Microbiologia. PMID 32921516 DOI: 10.1016/j.ram.2020.04.008   
2020 Datta A, Dhar S, Awate S, Brosh RM. Synthetic Lethal Interactions of RECQ Helicases. Trends in Cancer. PMID 33041245 DOI: 10.1016/j.trecan.2020.09.001   
2020 Bárdy P, Füzik T, Hrebík D, Pantůček R, Thomas Beatty J, Plevka P. Structure and mechanism of DNA delivery of a gene transfer agent. Nature Communications. 11: 3034. PMID 32541663 DOI: 10.1038/s41467-020-16669-9   
2020 Cao D, Yu W, Wang F, Jiang Y, Sheng Y, Sun Y, Zhang J, Xu J, Jiang D. Characterization of a DNA-hydrolyzing DNAzyme for generation of PCR strands of unequal length. Biochimie. PMID 33022314 DOI: 10.1016/j.biochi.2020.10.001   
2020 Tao CC, Yang Y, Li F, Qiao L, Wu Y, Sun XD, Zhang YY, Li CL. Cloning short DNA into plasmids by one-step PCR. Thoracic Cancer. PMID 33015950 DOI: 10.1111/1759-7714.13660   
2020 Atzinger A, Lawrence JG. Selection for ancient periodic motifs that do not impart DNA bending. Plos Genetics. 16: e1009042. PMID 33022009 DOI: 10.1371/journal.pgen.1009042   
2020 Alhmoud JF, Mustafa AG, Malki MI. Targeting DNA Repair Pathways in Hematological Malignancies. International Journal of Molecular Sciences. 21. PMID 33036137 DOI: 10.3390/ijms21197365   
2020 Das L, Quintana VG, Sweasy JB. NTHL1 in genomic integrity, aging and cancer. Dna Repair. 93: 102920. PMID 33087284 DOI: 10.1016/j.dnarep.2020.102920   
2020 Das L, Quintana VG, Sweasy JB. NTHL1 in genomic integrity, aging and cancer. Dna Repair. 93: 102920. PMID 33087284 DOI: 10.1016/j.dnarep.2020.102920   
2020 Leal AZ, Schwebs M, Briggs E, Weisert N, Reis H, Lemgruber L, Luko K, Wilkes J, Butter F, McCulloch R, Janzen CJ. Genome maintenance functions of a putative Trypanosoma brucei translesion DNA polymerase include telomere association and a role in antigenic variation. Nucleic Acids Research. 48: 9660-9680. PMID 32890403 DOI: 10.1093/nar/gkaa686   
2020 Guo F, Xing L. RNA helicase A as co-factor for DNA viruses during replication. Virus Research. 291: 198206. PMID 33132162 DOI: 10.1016/j.virusres.2020.198206   
2020 Dodd T, Botto M, Paul F, Fernandez-Leiro R, Lamers MH, Ivanov I. Polymerization and editing modes of a high-fidelity DNA polymerase are linked by a well-defined path. Nature Communications. 11: 5379. PMID 33097731 DOI: 10.1038/s41467-020-19165-2   
2020 Attoye B, Pou C, Blair E, Rinaldi C, Thomson F, Baker MJ, Corrigan DK. Developing a Low-Cost, Simple-to-Use Electrochemical Sensor for the Detection of Circulating Tumour DNA in Human Fluids. Biosensors. 10. PMID 33126531 DOI: 10.3390/bios10110156   
2020 Amundsen SK, Taylor AF, Smith GR. Chi hotspot control of RecBCD helicase-nuclease by long-range intramolecular signaling. Scientific Reports. 10: 19415. PMID 33154402 DOI: 10.1038/s41598-020-73078-0   
2020 Ouaray Z, Benner SA, Georgiadis MM, Richards NGJ. Building better DNA polymerases: Engineering the replication of expanded genetic alphabets. The Journal of Biological Chemistry. PMID 33004440 DOI: 10.1074/jbc.REV120.013745   
2020 Zhou K, Mo Q, Guo S, Liu Y, Yin C, Ji X, Guo X, Xing J. A novel Next-Generation Sequencing-based approach for concurrent detection of mitochondrial DNA copy number and mutation. The Journal of Molecular Diagnostics : Jmd. PMID 33011442 DOI: 10.1016/j.jmoldx.2020.09.005   
2020 He Y, Wang Y, Qin C, Xu Y, Cheng K, Xu H, Tian B, Zhao Y, Wang L, Hua Y. Structural and Functional Characterization of a Unique AP Endonuclease From . Frontiers in Microbiology. 11: 1178. PMID 33117296 DOI: 10.3389/fmicb.2020.01178   
2020 Raeker MO, Carethers JM. Immunological Features with DNA Microsatellite Alterations in Patients with Colorectal Cancer. Journal of Cancer Immunology. 2: 116-127. PMID 33000102 DOI: 10.33696/cancerimmunol.2.024   
2020 Bak E, Miller JT, Noronha A, Tavis J, Gallicchio E, Murelli RP, Le Grice SFJ. 3,7-Dihydroxytropolones Inhibit Initiation of Hepatitis B Virus Minus-Strand DNA Synthesis. Molecules (Basel, Switzerland). 25. PMID 32992516 DOI: 10.3390/molecules25194434   
2020 Fuh K, Mullen M, Blachut B, Stover E, Konstantinopoulos P, Liu J, Matulonis U, Khabele D, Mosammaparast N, Vindigni A. Homologous recombination deficiency real-time clinical assays, ready or not? Gynecologic Oncology. PMID 32967790 DOI: 10.1016/j.ygyno.2020.08.035   
2020 Sinha AK, Løbner-Olesen A, Riber L. Bacterial Chromosome Replication and DNA Repair During the Stringent Response. Frontiers in Microbiology. 11: 582113. PMID 32983079 DOI: 10.3389/fmicb.2020.582113   
2020 Kaminski AM, Bebenek K, Pedersen LC, Kunkel TA. DNA polymerase mu: An inflexible scaffold for substrate flexibility. Dna Repair. 93: 102932. PMID 33087269 DOI: 10.1016/j.dnarep.2020.102932   
2020 Komari CJ, Guttman AO, Carr SR, Trachtenberg TL, Orloff EA, Haas AV, Patrick AR, Chowdhary S, Waldman BC, Waldman AS. Alteration of genetic recombination and double-strand break repair in human cells by progerin expression. Dna Repair. 96: 102975. PMID 33010688 DOI: 10.1016/j.dnarep.2020.102975   
2020 Weaver SJ, Ortega DR, Sazinsky MH, Dalia TN, Dalia AB, Jensen GJ. CryoEM structure of the type IVa pilus secretin required for natural competence in Vibrio cholerae. Nature Communications. 11: 5080. PMID 33033258 DOI: 10.1038/s41467-020-18866-y   
2020 Lees-Miller JP, Cobban A, Katsonis P, Bacolla A, Tsutakawa SE, Hammel M, Meek K, Anderson DW, Lichtarge O, Tainer JA, Lees-Miller SP. Uncovering DNA-PKcs ancient phylogeny, unique sequence motifs and insights for human disease. Progress in Biophysics and Molecular Biology. PMID 33035590 DOI: 10.1016/j.pbiomolbio.2020.09.010   
2020 Jia J, Absmeier E, Holton N, Pietrzyk-Brzezinska AJ, Hackert P, Bohnsack KE, Bohnsack MT, Wahl MC. The interaction of DNA repair factors ASCC2 and ASCC3 is affected by somatic cancer mutations. Nature Communications. 11: 5535. PMID 33139697 DOI: 10.1038/s41467-020-19221-x   
2020 Chang CW, Xu X, Li M, Xin D, Ding L, Wang YT, Liu Y. Pathogenic mutations reveal a role of RECQ4 in mitochondrial RNA:DNA hybrid formation and resolution. Scientific Reports. 10: 17033. PMID 33046774 DOI: 10.1038/s41598-020-74095-9   
2020 Chen Y, Jiang T, Zhang H, Gou X, Han C, Wang J, Chen AT, Ma J, Liu J, Chen Z, Jing X, Lei H, Wang Z, Bao Y, Baqri M, et al. LRRC31 inhibits DNA repair and sensitizes breast cancer brain metastasis to radiation therapy. Nature Cell Biology. 22: 1276-1285. PMID 33005030 DOI: 10.1038/s41556-020-00586-6