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Elkan Rogers Blout - Related publications

Biological Chemistry Harvard Medical School, Boston, MA, United States 
protein chemistry
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Jedhe GS, Arora PS. Hydrogen bond surrogate helices as minimal mimics of protein α-helices. Methods in Enzymology. 656: 1-25. PMID 34325784 DOI: 10.1016/bs.mie.2021.04.007   
2021 Dass R, Corlianò E, Mulder FAA. The contribution of electrostatics to hydrogen exchange in the unfolded protein state. Biophysical Journal. PMID 34370996 DOI: 10.1016/j.bpj.2021.08.003   
2021 Guo M, Rosbottom I, Zhou L, Yong CW, Zhou L, Yin Q, Todorov IT, Errington E, Heng JYY. Triglycine (GGG) Adopts a Polyproline II (pPII) Conformation in Its Hydrated Crystal Form: Revealing the Role of Water in Peptide Crystallization. The Journal of Physical Chemistry Letters. 8416-8422. PMID 34436909 DOI: 10.1021/acs.jpclett.1c01622   
2021 Li J, Hou C, Ma X, Guo S, Zhang H, Shi L, Liao C, Zheng B, Ye L, Yang L, He X. Entropy-Enthalpy Compensations Fold Proteins in Precise Ways. International Journal of Molecular Sciences. 22. PMID 34502559 DOI: 10.3390/ijms22179653   
2021 Sato Y, Matsugami A, Watanabe S, Hayashi F, Arai M, Kigawa T, Nishimura C. Changes in dynamic and static structures of the HIV-1 p24 capsid protein N-domain caused by amino-acid substitution are associated with its viral viability. Protein Science : a Publication of the Protein Society. PMID 34523753 DOI: 10.1002/pro.4184   
2021 Song KC, Molina AV, Chen R, Gagnon IA, Koh YH, Roux B, Sosnick TR. Folding and misfolding of potassium channel monomers during assembly and tetramerization. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34413192 DOI: 10.1073/pnas.2103674118   
2021 Malliavin TE. Tandem domain structure determination based on a systematic enumeration of conformations. Scientific Reports. 11: 16925. PMID 34413388 DOI: 10.1038/s41598-021-96370-z   
2021 Faragó Z, Mirzahosseini A, Horváth D, Pálla T, Horváth P, Perczel A, Noszál B. Solution Structure and Acid-Base Properties of Reduced α-Conotoxin MI. Chemistry & Biodiversity. e2100464. PMID 34467647 DOI: 10.1002/cbdv.202100464   
2021 Rathman BM, Rowe JL, Del Valle JR. Synthesis and conformation of backbone N-aminated peptides. Methods in Enzymology. 656: 271-294. PMID 34325790 DOI: 10.1016/bs.mie.2021.04.013   
2021 Tan KP, Singh K, Hazra A, Madhusudhan MS. Peptide bond planarity constrains hydrogen bond geometry and influences secondary structure conformations. Current Research in Structural Biology. 3: 1-8. PMID 34382009 DOI: 10.1016/j.crstbi.2020.11.002   
2021 Zhou M, Wen H, Lei H, Zhang T. Molecular dynamics study of conformation transition from helix to sheet of Aβ42 peptide. Journal of Molecular Graphics & Modelling. 109: 108027. PMID 34534891 DOI: 10.1016/j.jmgm.2021.108027   
2021 Sanches K, Wai DCC, Norton RS. Conformational dynamics in peptide toxins: Implications for receptor interactions and molecular design. Toxicon : Official Journal of the International Society On Toxinology. 201: 127-140. PMID 34454969 DOI: 10.1016/j.toxicon.2021.08.020   
2021 Munhoz VHO, Ferreira CS, Nunes LO, Santos TL, Aisenbrey C, Adão R, de Carvalho Alcântara AF, de Magalhães MTQ, Piló-Veloso D, Resende JM, Bechinger B, Verly RM. Epimers l- and d-Phenylseptin: How the relative stereochemistry affects the peptide-membrane interactions. Biochimica Et Biophysica Acta. Biomembranes. 1863: 183708. PMID 34310911 DOI: 10.1016/j.bbamem.2021.183708   
2021 Van Deuren V, Yang YS, de Guillen K, Dubois C, Royer CA, Roumestand C, Barthe P. Comparative Assessment of NMR Probes for the Experimental Description of Protein Folding Pathways with High-Pressure NMR. Biology. 10. PMID 34356511 DOI: 10.3390/biology10070656   
2021 Si W, Yang H, Wu G, Zhang Y, Sha J. Velocity control of protein translocation through a nanopore by tuning the fraction of benzenoid residues. Nanoscale. PMID 34498657 DOI: 10.1039/d1nr04492c   
2021 Rösner HI, Caldarini M, Potel G, Malmodin D, Vanoni MA, Aliverti A, Broglia RA, Kragelund BB, Tiana G. The denatured state of HIV-1 protease under native conditions. Proteins. PMID 34312913 DOI: 10.1002/prot.26189   
2021 Tanaka M, Kato T, Oda M. Conformational changes of α-helical peptides with different hydrophobic residues induced by metal-ion binding. Biophysical Chemistry. 277: 106661. PMID 34388679 DOI: 10.1016/j.bpc.2021.106661   
2021 Debnath S, Ghosh S, Pandit G, Satpati P, Chatterjee S. Effect of Differential Geminal Substitution of γ Amino Acid Residues at the ( + 2) Position of αγ Turn Segments on the Conformation of Template β-Hairpin Peptides. The Journal of Organic Chemistry. 86: 11310-11323. PMID 34479402 DOI: 10.1021/acs.joc.1c00351   
2021 Gao W, Shu T, Liu Q, Guo H, Ling S, Zhou L. Method of Using Raman Spectroscopy to Understand the Conformation of Fibrous Proteins. Methods in Molecular Biology (Clifton, N.J.). 2347: 229-239. PMID 34472069 DOI: 10.1007/978-1-0716-1574-4_20   
2021 Mayerthaler F, Feldberg AL, Alfermann J, Sun X, Steinchen W, Yang H, Mootz HD. Intermediary conformations linked to the directionality of the aminoacylation pathway of nonribosomal peptide synthetases. Rsc Chemical Biology. 2: 843-854. PMID 34458813 DOI: 10.1039/d0cb00220h   
2021 Saranya V, Shankar R, Gatasheh MK, Zehra S. Impact of Au metal clusters on the structural and inhibitory mechanism of Aβ peptide: A theoretical approach. Environmental Research. 204: 111920. PMID 34464618 DOI: 10.1016/j.envres.2021.111920   
2021 Cymer F, Schneider D. Small Residues Inhibit Homo-Dimerization of the Human Carbonic Anhydrase XII Transmembrane Domain. Membranes. 11. PMID 34357162 DOI: 10.3390/membranes11070512   
2021 Xu J, Namanja A, Chan SL, Son C, Petros AM, Sun C, Radziejewski C, Ihnat PM. Insights into the conformation and self-association of a concentrated monoclonal antibody using isothermal chemical denaturation and nuclear magnetic resonance. Journal of Pharmaceutical Sciences. PMID 34506864 DOI: 10.1016/j.xphs.2021.09.005   
2021 Zhang D, Wu H, Zhao J. Computational design and experimental substantiation of conformationally constrained peptides from the complex interfaces of transcriptional enhanced associate domains with their cofactors in gastric cancer. Computational Biology and Chemistry. 94: 107569. PMID 34500324 DOI: 10.1016/j.compbiolchem.2021.107569   
2021 Fellows AP, Casford MTL, Davies PB. Using hybrid atomic force microscopy and infrared spectroscopy (AFM-IR) to identify chemical components of the hair medulla on the nanoscale. Journal of Microscopy. PMID 34313326 DOI: 10.1111/jmi.13052   
2021 Sen S, Kumar H, Udgaonkar JB. Microsecond dynamics during the binding-induced folding of an intrinsically disordered protein. Journal of Molecular Biology. 167254. PMID 34537237 DOI: 10.1016/j.jmb.2021.167254   
2021 Mir S, Ashraf S, Saeed M, Rahman AU, Ul-Haq Z. Protonation states at different pH, conformational changes and impact of glycosylation in synapsin Ia. Physical Chemistry Chemical Physics : Pccp. PMID 34318818 DOI: 10.1039/d1cp00531f   
2021 Voith von Voithenberg L, Barth A, Trauschke V, Demarco B, Tyagi S, Koehler C, Lemke EA, Lamb DC. Comparative analysis of the coordinated motion of Hsp70s from different organelles observed by single-molecule three-color FRET. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34389669 DOI: 10.1073/pnas.2025578118   
2021 Fowler NJ, Sljoka A, Williamson MP. The accuracy of NMR protein structures in the Protein Data Bank. Structure (London, England : 1993). PMID 34331857 DOI: 10.1016/j.str.2021.07.001   
2021 McCaul N, Quandte M, Bontjer I, van Zadelhoff G, Land A, Crooks ET, Binley JM, Sanders RW, Braakman I. Intramolecular quality control: HIV-1 envelope gp160 signal-peptide cleavage as a functional folding checkpoint. Cell Reports. 36: 109646. PMID 34469718 DOI: 10.1016/j.celrep.2021.109646   
2021 Santhouse JR, Rao SR, Horne WS. Analysis of folded structure and folding thermodynamics in heterogeneous-backbone proteomimetics. Methods in Enzymology. 656: 93-122. PMID 34325801 DOI: 10.1016/bs.mie.2021.04.009   
2021 Sepehri A, Nepal B, Lazaridis T. Distinct Modes of Action of IAPP Oligomers on Membranes. Journal of Chemical Information and Modeling. PMID 34499498 DOI: 10.1021/acs.jcim.1c00767   
2021 Poghosyan AH, Shahinyan AA, Kirakosyan GR, Ayvazyan NM, Mamasakhlisov YS, Papoian GA. A molecular dynamics study of protein denaturation induced by sulfonate-based surfactants. Journal of Molecular Modeling. 27: 261. PMID 34432183 DOI: 10.1007/s00894-021-04882-2   
2021 Ikoma M, Nakasone Y, Terazima M. Photoreaction of photoactivated adenylate cyclase from cyanobacterium Microcoleus chthonoplastes. Journal of Photochemistry and Photobiology. B, Biology. 221: 112252. PMID 34265548 DOI: 10.1016/j.jphotobiol.2021.112252   
2021 Li ZJ, Srebnik S, Rojas OJ. Revisiting Cation Complexation and Hydrogen Bonding of Single-Chain Polyguluronate Alginate. Biomacromolecules. PMID 34461721 DOI: 10.1021/acs.biomac.1c00840   
2021 Breunig SL, Tirrell DA. Incorporation of proline analogs into recombinant proteins expressed in Escherichia coli. Methods in Enzymology. 656: 545-571. PMID 34325798 DOI: 10.1016/bs.mie.2021.05.008   
2021 Volkov VV, Heinz H, Perry CC. Anchoring of a hydrophobic heptapeptide (AFILPTG) on silica facilitates peptide unfolding at the abiotic-biotic interface. Physical Chemistry Chemical Physics : Pccp. PMID 34382985 DOI: 10.1039/d1cp02072b   
2021 Lento C, Wilson DJ. Subsecond Time-Resolved Mass Spectrometry in Dynamic Structural Biology. Chemical Reviews. PMID 34324314 DOI: 10.1021/acs.chemrev.1c00222   
2021 Papp D, Szigyártó IC, Nordén B, Perczel A, Beke-Somfai T. Structural Water Stabilizes Protein Motifs in Liquid Protein Phase: The Folding Mechanism of Short β-Sheets Coupled to Phase Transition. International Journal of Molecular Sciences. 22. PMID 34445303 DOI: 10.3390/ijms22168595   
2021 Huang S, Mei H, Lu L, Kuang Z, Heng Y, Xu L, Liang X, Qiu M, Pan X. Conformational transitions of caspase-6 in substrate-induced activation process explored by perturbation-response scanning combined with targeted molecular dynamics. Computational and Structural Biotechnology Journal. 19: 4156-4164. PMID 34527189 DOI: 10.1016/j.csbj.2021.07.017   
2021 Morris DTJ, Wales SM, Tilly DP, Farrar EHE, Grayson MN, Ward JW, Clayden J. A molecular communication channel consisting of a single reversible chain of hydrogen bonds in a conformationally flexible oligomer. Chem. 7: 2460-2472. PMID 34553103 DOI: 10.1016/j.chempr.2021.06.022   
2021 Dreydoppel M, Dorn B, Modig K, Akke M, Weininger U. Transition-State Compressibility and Activation Volume of Transient Protein Conformational Fluctuations. Jacs Au. 1: 833-842. PMID 34467336 DOI: 10.1021/jacsau.1c00062   
2021 Mule SN, Rosa-Fernandes L, Coutinho JVP, Gomes VM, Macedo-da-Silva J, Santiago VF, Quina D, de Oliveira GS, Thaysen-Andersen M, Larsen MR, Labriola L, Palmisano G. Systems-wide analysis of glycoprotein conformational changes by limited deglycosylation assay. Journal of Proteomics. 248: 104355. PMID 34450331 DOI: 10.1016/j.jprot.2021.104355   
2021 Xu Y, Knapp K, Le KN, Schafer NP, Safari MS, Davtyan A, Wolynes PG, Vekilov PG. Frustrated peptide chains at the fibril tip control the kinetics of growth of amyloid-β fibrils. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34518234 DOI: 10.1073/pnas.2110995118   
2021 Zweckstetter M. NMR hawk-eyed view of AlphaFold2 structures. Protein Science : a Publication of the Protein Society. PMID 34469019 DOI: 10.1002/pro.4175   
2021 Maben Z, Arya R, Georgiadis D, Stratikos E, Stern LJ. Conformational dynamics linked to domain closure and substrate binding explain the ERAP1 allosteric regulation mechanism. Nature Communications. 12: 5302. PMID 34489420 DOI: 10.1038/s41467-021-25564-w   
2021 Rumfeldt J, Kurttila M, Takala H, Ihalainen JA. The hairpin extension controls solvent access to the chromophore binding pocket in a bacterial phytochrome: a UV-vis absorption spectroscopy study. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 20: 1173-1181. PMID 34460093 DOI: 10.1007/s43630-021-00090-2   
2021 Banerjee R, Sheet T, Banerjee S, Biondi B, Formaggio F, Toniolo C, Peggion C. C-Methyl-l-valine: A Preferential Choice over α-Aminoisobutyric Acid for Designing Right-Handed α-Helical Scaffolds. Biochemistry. PMID 34463474 DOI: 10.1021/acs.biochem.1c00340   
2021 Nguyen ML, Byun J, Cho BK. The Role of the 1,2,3-Triazolyl Heterocycle in the Helical Columnar Assembly and Electric Field Response. The Journal of Physical Chemistry. B. PMID 34342228 DOI: 10.1021/acs.jpcb.1c05301   
2021 Lei H, Ma Q, Li W, Wen J, Ma H, Qin M, Wang W, Cao Y. An ester bond underlies the mechanical strength of a pathogen surface protein. Nature Communications. 12: 5082. PMID 34426584 DOI: 10.1038/s41467-021-25425-6