cached image

Sriram Subramaniam - Publications

Cell Biology National Cancer Institute, Rockville, MD, United States 
Three-Dimensional Electron Microscopy at Molecular Resolution

124 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Lin M, Grandinetti G, Hartnell LM, Bliss D, Subramaniam S, Rikihisa Y. Host membrane lipids are trafficked to membranes of intravacuolar bacterium . Proceedings of the National Academy of Sciences of the United States of America. PMID 32193339 DOI: 10.1073/Pnas.1921619117  0.52
2019 Caffrey B, Maltsev AV, Gonzalez-Freire M, Hartnell LM, Ferrucci L, Subramaniam S. Semi-Automated 3D Segmentation of Human Skeletal Muscle Using Focused Ion Beam-Scanning Electron Microscopic Images. Journal of Structural Biology. PMID 30914296 DOI: 10.1016/J.Jsb.2019.03.008  0.32
2018 Cheng HC, Cardone A, Jain S, Krokos E, Narayan K, Subramaniam S, Varshney A. Deep-learning-assisted Volume Visualization. Ieee Transactions On Visualization and Computer Graphics. PMID 29994182 DOI: 10.1109/Tvcg.2018.2796085  0.92
2018 Glancy B, Hartnell LM, Combs CA, Femnou A, Sun J, Murphy E, Subramaniam S, Balaban RS. Power Grid Protection of the Muscle Mitochondrial Reticulum. Cell Reports. 23: 2832. PMID 29847811 DOI: 10.1016/j.celrep.2018.05.055  0.32
2017 Glancy B, Hartnell LM, Combs CA, Fenmou A, Sun J, Murphy E, Subramaniam S, Balaban RS. Power Grid Protection of the Muscle Mitochondrial Reticulum. Cell Reports. 19: 487-496. PMID 28423313 DOI: 10.1016/J.Celrep.2017.03.063  0.32
2016 Meyerson JR, Chittori S, Merk A, Rao P, Han TH, Serpe M, Mayer ML, Subramaniam S. Structural basis of kainate subtype glutamate receptor desensitization. Nature. PMID 27580033 DOI: 10.1038/Nature19352  1
2016 Puppala AK, French RL, Matthies D, Baxa U, Subramaniam S, Simonović M. Structural basis for early-onset neurological disorders caused by mutations in human selenocysteine synthase. Scientific Reports. 6: 32563. PMID 27576344 DOI: 10.1038/Srep32563  1
2016 Subramaniam S, Earl LA, Falconieri V, Milne JL, Egelman EH. Resolution advances in cryo-EM enable application to drug discovery. Current Opinion in Structural Biology. 41: 194-202. PMID 27552081 DOI: 10.1016/J.Sbi.2016.07.009  1
2016 Earl LA, Subramaniam S. Cryo-EM of viruses and vaccine design. Proceedings of the National Academy of Sciences of the United States of America. PMID 27482113 DOI: 10.1073/Pnas.1609721113  1
2016 Stuart DI, Subramaniam S, Abrescia NG. The democratization of cryo-EM. Nature Methods. 13: 607-608. PMID 27467721 DOI: 10.1038/Nmeth.3946  1
2016 Tran EE, Nelson EA, Bonagiri P, Simmons JA, Shoemaker CJ, Schmaljohn CS, Kobinger GP, Zeitlin L, Subramaniam S, White JM. Mapping of Ebolavirus Neutralization by Monoclonal Antibodies in the ZMapp Cocktail Using Cryo-Electron Tomography and Studies of Cellular Entry. Journal of Virology. PMID 27279622 DOI: 10.1128/Jvi.00406-16  1
2016 Merk A, Bartesaghi A, Banerjee S, Falconieri V, Rao P, Davis MI, Pragani R, Boxer MB, Earl LA, Milne JL, Subramaniam S. Breaking Cryo-EM Resolution Barriers to Facilitate Drug Discovery. Cell. PMID 27238019 DOI: 10.1016/J.Cell.2016.05.040  1
2016 Frank G, Shukla S, Rao P, Borgnia MJ, Bartesaghi A, Merk A, Mobin A, Esser L, Earl LA, Gottesman MM, Xia D, Ambudkar SV, Subramaniam S. Cryo-EM analysis of the conformational landscape of human P-glycoprotein (ABCB1) during its catalytic cycle. Molecular Pharmacology. PMID 27190212 DOI: 10.1124/Mol.116.104190  1
2016 Tran EE, Podolsky KA, Bartesaghi A, Kuybeda O, Grandinetti G, Wohlbold TJ, Tan GS, Nachbagauer R, Palese P, Krammer F, Subramaniam S. Cryo-electron Microscopy Structures of Chimeric Hemagglutinin Displayed on a Universal Influenza Vaccine Candidate. Mbio. 7. PMID 27006464 DOI: 10.1128/Mbio.00257-16  1
2016 Matthies D, Dalmas O, Borgnia MJ, Dominik PK, Merk A, Rao P, Reddy BG, Islam S, Bartesaghi A, Perozo E, Subramaniam S. Cryo-EM Structures of the Magnesium Channel CorA Reveal Symmetry Break upon Gating. Cell. 164: 747-56. PMID 26871634 DOI: 10.1016/J.Cell.2015.12.055  1
2016 Ognjenović J, Wu J, Matthies D, Baxa U, Subramaniam S, Ling J, Simonović M. The crystal structure of human GlnRS provides basis for the development of neurological disorders. Nucleic Acids Research. PMID 26869582 DOI: 10.1093/Nar/Gkw082  1
2016 Banerjee S, Bartesaghi A, Merk A, Rao P, Bulfer SL, Yan Y, Green N, Mroczkowski B, Neitz RJ, Wipf P, Falconieri V, Deshaies RJ, Milne JL, Huryn D, Arkin M, ... Subramaniam S, et al. 2.3 Å resolution cryo-EM structure of human p97 and mechanism of allosteric inhibition. Science (New York, N.Y.). PMID 26822609 DOI: 10.1126/Science.Aad7974  1
2015 Narayan K, Subramaniam S. Focused ion beams in biology. Nature Methods. 12: 1021-31. PMID 26513553 DOI: 10.1038/Nmeth.3623  1
2015 Glancy B, Hartnell LM, Malide D, Yu ZX, Combs CA, Connelly PS, Subramaniam S, Balaban RS. Mitochondrial reticulum for cellular energy distribution in muscle. Nature. 523: 617-20. PMID 26223627 DOI: 10.1038/Nature14614  0.32
2015 Sun L, Zhang X, Gao S, Rao PA, Padilla-Sanchez V, Chen Z, Sun S, Xiang Y, Subramaniam S, Rao VB, Rossmann MG. Cryo-EM structure of the bacteriophage T4 portal protein assembly at near-atomic resolution. Nature Communications. 6: 7548. PMID 26144253 DOI: 10.1038/Ncomms8548  1
2015 Bartesaghi A, Merk A, Banerjee S, Matthies D, Wu X, Milne JL, Subramaniam S. 2.2 Å resolution cryo-EM structure of β-galactosidase in complex with a cell-permeant inhibitor. Science (New York, N.Y.). 348: 1147-51. PMID 25953817 DOI: 10.1126/Science.Aab1576  1
2015 Wu IL, Narayan K, Castaing JP, Tian F, Subramaniam S, Ramamurthi KS. A versatile nano display platform from bacterial spore coat proteins. Nature Communications. 6: 6777. PMID 25854653 DOI: 10.1038/Ncomms7777  1
2015 Moulaei T, Alexandre KB, Shenoy SR, Meyerson JR, Krumpe LR, Constantine B, Wilson J, Buckheit RW, McMahon JB, Subramaniam S, Wlodawer A, O'Keefe BR. Griffithsin tandemers: flexible and potent lectin inhibitors of the human immunodeficiency virus. Retrovirology. 12: 6. PMID 25613831 DOI: 10.1186/S12977-014-0127-3  1
2015 Frank GA, Narayan K, Bess JW, Del Prete GQ, Wu X, Moran A, Hartnell LM, Earl LA, Lifson JD, Subramaniam S. Maturation of the HIV-1 core by a non-diffusional phase transition. Nature Communications. 6: 5854. PMID 25569620 DOI: 10.1038/Ncomms6854  1
2015 Subramaniam S, Radhakrishnan A, Chakravarthi S, Palanisamy UD, Haleagrahara N. Antihyperglycemic effects of Nephelium lappaceum rind extract in high fat-induced diabetic rats International Journal of Pharmacology. 11: 542-551. DOI: 10.3923/ijp.2015.542.551  0.36
2015 Rao CVSB, Jayalakshmi S, Subramaniam S, Sivaraman N, Rao PRV. Extraction studies of actinides and lanthanides by bifunctional H-phosphonates Radiochimica Acta. 103: 345-358. DOI: 10.1515/ract-2014-2279  0.01
2014 Risco C, de Castro IF, Sanz-Sánchez L, Narayan K, Grandinetti G, Subramaniam S. Three-Dimensional Imaging of Viral Infections. Annual Review of Virology. 1: 453-73. PMID 26958730 DOI: 10.1146/Annurev-Virology-031413-085351  0.92
2014 Meyerson JR, Rao P, Kumar J, Chittori S, Banerjee S, Pierson J, Mayer ML, Subramaniam S. Self-assembled monolayers improve protein distribution on holey carbon cryo-EM supports. Scientific Reports. 4: 7084. PMID 25403871 DOI: 10.1038/Srep07084  1
2014 Patwardhan A, Ashton A, Brandt R, Butcher S, Carzaniga R, Chiu W, Collinson L, Doux P, Duke E, Ellisman MH, Franken E, Grünewald K, Heriche JK, Koster A, Kühlbrandt W, ... ... Subramaniam S, et al. A 3D cellular context for the macromolecular world. Nature Structural & Molecular Biology. 21: 841-5. PMID 25289590 DOI: 10.1038/Nsmb.2897  1
2014 Meyerson JR, Kumar J, Chittori S, Rao P, Pierson J, Bartesaghi A, Mayer ML, Subramaniam S. Structural mechanism of glutamate receptor activation and desensitization. Nature. 514: 328-34. PMID 25119039 DOI: 10.1038/Nature13603  1
2014 Bartesaghi A, Matthies D, Banerjee S, Merk A, Subramaniam S. Structure of β-galactosidase at 3.2-Å resolution obtained by cryo-electron microscopy. Proceedings of the National Academy of Sciences of the United States of America. 111: 11709-14. PMID 25071206 DOI: 10.1073/Pnas.1402809111  1
2014 Tran EE, Simmons JA, Bartesaghi A, Shoemaker CJ, Nelson E, White JM, Subramaniam S. Spatial localization of the Ebola virus glycoprotein mucin-like domain determined by cryo-electron tomography. Journal of Virology. 88: 10958-62. PMID 25008940 DOI: 10.1128/Jvi.00870-14  1
2014 Do T, Murphy G, Earl LA, Del Prete GQ, Grandinetti G, Li GH, Estes JD, Rao P, Trubey CM, Thomas J, Spector J, Bliss D, Nath A, Lifson JD, Subramaniam S. Three-dimensional imaging of HIV-1 virological synapses reveals membrane architectures involved in virus transmission. Journal of Virology. 88: 10327-39. PMID 24965444 DOI: 10.1128/Jvi.00788-14  1
2014 Subramaniam S, Sundarasekar J, Sahgal G, Murugaiyah V. Comparative analysis of lycorine in wild plant and callus culture samples of Hymenocallis littoralis by HPLC-UV method. Thescientificworldjournal. 2014: 408306. PMID 24895650 DOI: 10.1155/2014/408306  0.01
2014 Narayan K, Danielson CM, Lagarec K, Lowekamp BC, Coffman P, Laquerre A, Phaneuf MW, Hope TJ, Subramaniam S. Multi-resolution correlative focused ion beam scanning electron microscopy: applications to cell biology. Journal of Structural Biology. 185: 278-84. PMID 24300554 DOI: 10.1016/J.Jsb.2013.11.008  1
2014 Yoo TS, Lowekamp BC, Kuybeda O, Narayan K, Frank GA, Bartesaghi A, Borgnia M, Subramaniam S, Sapiro G, Ackerman MJ. Accelerating discovery in 3D microanalysis: Leveraging open source software and deskside high performance computing Microscopy and Microanalysis. 20: 774-775. DOI: 10.1017/S1431927614005595  1
2014 Agard D, Cheng Y, Glaeser RM, Subramaniam S. Single-particle cryo-electron microscopy (cryo-EM): Progress, challenges, and perspectives for further improvement Advances in Imaging and Electron Physics. 185: 113-137. DOI: 10.1016/B978-0-12-800144-8.00002-1  1
2013 Wang T, Choi E, Monaco MC, Campanac E, Medynets M, Do T, Rao P, Johnson KR, Elkahloun AG, Von Geldern G, Johnson T, Subramaniam S, Hoffman D, Major E, Nath A. Derivation of neural stem cells from human adult peripheral CD34+ cells for an autologous model of neuroinflammation. Plos One. 8: e81720. PMID 24303066 DOI: 10.1371/Journal.Pone.0081720  1
2013 Gustchina E, Li M, Ghirlando R, Schuck P, Louis JM, Pierson J, Rao P, Subramaniam S, Gustchina A, Clore GM, Wlodawer A. Complexes of neutralizing and non-neutralizing affinity matured fabs with a mimetic of the internal trimeric coiled-coil of HIV-1 gp41 Plos One. 8. PMID 24244293 DOI: 10.1371/Journal.Pone.0078187  1
2013 Bartesaghi A, Merk A, Borgnia MJ, Milne JL, Subramaniam S. Prefusion structure of trimeric HIV-1 envelope glycoprotein determined by cryo-electron microscopy. Nature Structural & Molecular Biology. 20: 1352-7. PMID 24154805 DOI: 10.1038/Nsmb.2711  1
2013 Subramaniam S. Structure of trimeric HIV-1 envelope glycoproteins. Proceedings of the National Academy of Sciences of the United States of America. 110: E4172-4. PMID 24106302 DOI: 10.1073/Pnas.1313802110  1
2013 Wu X, Subramaniam S, Case DA, Wu KW, Brooks BR. Targeted conformational search with map-restrained self-guided Langevin dynamics: application to flexible fitting into electron microscopic density maps. Journal of Structural Biology. 183: 429-40. PMID 23876978 DOI: 10.1016/J.Jsb.2013.07.006  1
2013 Earl LA, Lifson JD, Subramaniam S. Catching HIV 'in the act' with 3D electron microscopy. Trends in Microbiology. 21: 397-404. PMID 23850373 DOI: 10.1016/J.Tim.2013.06.004  1
2013 Merk A, Subramaniam S. HIV-1 envelope glycoprotein structure. Current Opinion in Structural Biology. 23: 268-76. PMID 23602427 DOI: 10.1016/J.Sbi.2013.03.007  1
2013 Harris AK, Bartesaghi A, Milne JL, Subramaniam S. HIV-1 envelope glycoprotein trimers display open quaternary conformation when bound to the gp41 membrane-proximal external-region-directed broadly neutralizing antibody Z13e1. Journal of Virology. 87: 7191-6. PMID 23596305 DOI: 10.1128/Jvi.03284-12  1
2013 Schauder DM, Kuybeda O, Zhang J, Klymko K, Bartesaghi A, Borgnia MJ, Mayer ML, Subramaniam S. Glutamate receptor desensitization is mediated by changes in quaternary structure of the ligand binding domain. Proceedings of the National Academy of Sciences of the United States of America. 110: 5921-6. PMID 23530186 DOI: 10.1016/J.Bpj.2012.11.1953  1
2013 Harris AK, Meyerson JR, Matsuoka Y, Kuybeda O, Moran A, Bliss D, Das SR, Yewdell JW, Sapiro G, Subbarao K, Subramaniam S. Structure and accessibility of HA trimers on intact 2009 H1N1 pandemic influenza virus to stem region-specific neutralizing antibodies. Proceedings of the National Academy of Sciences of the United States of America. 110: 4592-7. PMID 23460696 DOI: 10.1073/Pnas.1214913110  1
2013 Milne JL, Borgnia MJ, Bartesaghi A, Tran EE, Earl LA, Schauder DM, Lengyel J, Pierson J, Patwardhan A, Subramaniam S. Cryo-electron microscopy--a primer for the non-microscopist. The Febs Journal. 280: 28-45. PMID 23181775 DOI: 10.1111/Febs.12078  1
2013 Kuybeda O, Frank GA, Bartesaghi A, Borgnia M, Subramaniam S, Sapiro G. A collaborative framework for 3D alignment and classification of heterogeneous subvolumes in cryo-electron tomography. Journal of Structural Biology. 181: 116-27. PMID 23110852 DOI: 10.1016/J.Jsb.2012.10.010  1
2012 Yoo TS, Bliss D, Lowekamp BC, Chen DT, Murphy GE, Narayan K, Hartnell LM, Do T, Subramaniam S. Visualizing cells and humans in 3D: biomedical image analysis at nanometer and meter scales. Ieee Computer Graphics and Applications. 32: 39-49. PMID 24806986 DOI: 10.1109/Mcg.2012.68  1
2012 Bartesaghi A, Lecumberry F, Sapiro G, Subramaniam S. Protein secondary structure determination by constrained single-particle cryo-electron tomography. Structure (London, England : 1993). 20: 2003-13. PMID 23217682 DOI: 10.1016/J.Str.2012.10.016  1
2012 Gopinath A, Xu G, Ress D, Öktem O, Subramaniam S, Bajaj C. Shape-based regularization of electron tomographic reconstruction. Ieee Transactions On Medical Imaging. 31: 2241-52. PMID 22922711 DOI: 10.1109/Tmi.2012.2214229  1
2012 Tran EE, Borgnia MJ, Kuybeda O, Schauder DM, Bartesaghi A, Frank GA, Sapiro G, Milne JL, Subramaniam S. Structural mechanism of trimeric HIV-1 envelope glycoprotein activation. Plos Pathogens. 8: e1002797. PMID 22807678 DOI: 10.1371/Journal.Ppat.1002797  1
2012 Frank GA, Bartesaghi A, Kuybeda O, Borgnia MJ, White TA, Sapiro G, Subramaniam S. Computational separation of conformational heterogeneity using cryo-electron tomography and 3D sub-volume averaging. Journal of Structural Biology. 178: 165-76. PMID 22248450 DOI: 10.1016/J.Jsb.2012.01.004  1
2012 Narayan K, Prosa TJ, Fu J, Kelly TF, Subramaniam S. Chemical mapping of mammalian cells by atom probe tomography. Journal of Structural Biology. 178: 98-107. PMID 22245777 DOI: 10.1016/J.Jsb.2011.12.016  0.92
2012 Karnik S, Subramaniam S. There is no overkill in biochemistry: Har Gobind Khorana, a pioneer in membrane biology Resonance. 17: 1157-1164. DOI: 10.1007/S12045-012-0132-6  1
2011 Meyerson JR, White TA, Bliss D, Moran A, Bartesaghi A, Borgnia MJ, de la Cruz MJ, Schauder D, Hartnell LM, Nandwani R, Dawood M, Kim B, Kim JH, Sununu J, Yang L, ... ... Subramaniam S, et al. Determination of molecular structures of HIV envelope glycoproteins using cryo-electron tomography and automated sub-tomogram averaging. Journal of Visualized Experiments : Jove. PMID 22158337 DOI: 10.3791/2770  1
2011 White TA, Bartesaghi A, Borgnia MJ, de la Cruz MJ, Nandwani R, Hoxie JA, Bess JW, Lifson JD, Milne JL, Subramaniam S. Three-dimensional structures of soluble CD4-bound states of trimeric simian immunodeficiency virus envelope glycoproteins determined by using cryo-electron tomography. Journal of Virology. 85: 12114-23. PMID 21937655 DOI: 10.1128/Jvi.05297-11  1
2011 Murphy GE, Narayan K, Lowekamp BC, Hartnell LM, Heymann JA, Fu J, Subramaniam S. Correlative 3D imaging of whole mammalian cells with light and electron microscopy. Journal of Structural Biology. 176: 268-78. PMID 21907806 DOI: 10.1016/J.Jsb.2011.08.013  1
2011 Harris A, Borgnia MJ, Shi D, Bartesaghi A, He H, Pejchal R, Kang Y, Depetris R, Marozsan AJ, Sanders RW, Klasse PJ, Milne JLS, Wilson IA, Olson WC, Moore JP, ... Subramaniam S, et al. Trimeric HIV-1 glycoprotein gp140 immunogens and native HIV-1 envelope glycoproteins display the same closed and open quaternary molecular architectures Proceedings of the National Academy of Sciences of the United States of America. 108: 11440-11445. PMID 21709254 DOI: 10.1073/Pnas.1101414108  1
2011 Tarasov SG, Gaponenko V, Howard OM, Chen Y, Oppenheim JJ, Dyba MA, Subramaniam S, Lee Y, Michejda C, Tarasova NI. Structural plasticity of a transmembrane peptide allows self-assembly into biologically active nanoparticles. Proceedings of the National Academy of Sciences of the United States of America. 108: 9798-803. PMID 21628584 DOI: 10.1073/Pnas.1014598108  1
2011 Khursigara CM, Lan G, Neumann S, Wu X, Ravindran S, Borgnia MJ, Sourjik V, Milne J, Tu Y, Subramaniam S. Lateral density of receptor arrays in the membrane plane influences sensitivity of the E. coli chemotaxis response. The Embo Journal. 30: 1719-29. PMID 21441899 DOI: 10.1038/Emboj.2011.77  1
2011 Szakal C, Narayan K, Fu J, Lefman J, Subramaniam S. Compositional mapping of the surface and interior of mammalian cells at submicrometer resolution. Analytical Chemistry. 83: 1207-13. PMID 21268648 DOI: 10.1021/Ac1030607  1
2011 Butan C, Hartnell LM, Fenton AK, Bliss D, Sockett RE, Subramaniam S, Milne JL. Spiral architecture of the nucleoid in Bdellovibrio bacteriovorus. Journal of Bacteriology. 193: 1341-50. PMID 21148724 DOI: 10.1128/Jb.01061-10  0.32
2010 White TA, Bartesaghi A, Borgnia MJ, Meyerson JR, de la Cruz MJ, Bess JW, Nandwani R, Hoxie JA, Lifson JD, Milne JL, Subramaniam S. Molecular architectures of trimeric SIV and HIV-1 envelope glycoproteins on intact viruses: strain-dependent variation in quaternary structure. Plos Pathogens. 6: e1001249. PMID 21203482 DOI: 10.1371/Journal.Ppat.1001249  1
2010 Felts RL, Narayan K, Estes JD, Shi D, Trubey CM, Fu J, Hartnell LM, Ruthel GT, Schneider DK, Nagashima K, Bess JW, Bavari S, Lowekamp BC, Bliss D, Lifson JD, ... Subramaniam S, et al. 3D visualization of HIV transfer at the virological synapse between dendritic cells and T cells. Proceedings of the National Academy of Sciences of the United States of America. 107: 13336-41. PMID 20624966 DOI: 10.1073/Pnas.1003040107  1
2010 Murphy GE, Lowekamp BC, Zerfas PM, Chandler RJ, Narasimha R, Venditti CP, Subramaniam S. Ion-abrasion scanning electron microscopy reveals distorted liver mitochondrial morphology in murine methylmalonic acidemia. Journal of Structural Biology. 171: 125-32. PMID 20399866 DOI: 10.1016/J.Jsb.2010.04.005  1
2009 Bennett AE, Narayan K, Shi D, Hartnell LM, Gousset K, He H, Lowekamp BC, Yoo TS, Bliss D, Freed EO, Subramaniam S. Ion-abrasion scanning electron microscopy reveals surface-connected tubular conduits in HIV-infected macrophages. Plos Pathogens. 5: e1000591. PMID 19779568 DOI: 10.1371/Journal.Ppat.1000591  1
2009 Milne JL, Subramaniam S. Cryo-electron tomography of bacteria: progress, challenges and future prospects. Nature Reviews. Microbiology. 7: 666-75. PMID 19668224 DOI: 10.1038/Nrmicro2183  1
2009 Bartesaghi A, Subramaniam S. Membrane protein structure determination using cryo-electron tomography and 3D image averaging. Current Opinion in Structural Biology. 19: 402-7. PMID 19646859 DOI: 10.1016/J.Sbi.2009.06.005  1
2009 Narayan K, Perkins EM, Murphy GE, Dalai SK, Edidin M, Subramaniam S, Sadegh-Nasseri S. Staphylococcal enterotoxin A induces small clusters of HLA-DR1 on B cells. Plos One. 4: e6188. PMID 19587800 DOI: 10.1371/Journal.Pone.0006188  1
2009 Hildebrand M, Kim S, Shi D, Scott K, Subramaniam S. 3D imaging of diatoms with ion-abrasion scanning electron microscopy. Journal of Structural Biology. 166: 316-28. PMID 19269330 DOI: 10.1017/S1431927608088958  1
2009 Heymann JA, Shi D, Kim S, Bliss D, Milne JL, Subramaniam S. 3D imaging of mammalian cells with ion-abrasion scanning electron microscopy. Journal of Structural Biology. 166: 1-7. PMID 19116171 DOI: 10.1016/J.Jsb.2008.11.005  0.32
2009 Narasimha R, Ouyang H, Gray A, McLaughlin SW, Subramaniam S. Automatic joint classification and segmentation of whole cell 3D images Pattern Recognition. 42: 1067-1079. DOI: 10.1016/J.Patcog.2008.08.009  1
2008 Khursigara CM, Wu X, Zhang P, Lefman J, Subramaniam S. Role of HAMP domains in chemotaxis signaling by bacterial chemoreceptors. Proceedings of the National Academy of Sciences of the United States of America. 105: 16555-60. PMID 18940922 DOI: 10.1073/Pnas.0806401105  1
2008 Liu J, Bartesaghi A, Borgnia MJ, Sapiro G, Subramaniam S. Molecular architecture of native HIV-1 gp120 trimers. Nature. 455: 109-13. PMID 18668044 DOI: 10.1038/Nature07159  1
2008 Narasimha R, Aganj I, Bennett AE, Borgnia MJ, Zabransky D, Sapiro G, McLaughlin SW, Milne JL, Subramaniam S. Evaluation of denoising algorithms for biological electron tomography. Journal of Structural Biology. 164: 7-17. PMID 18585059 DOI: 10.1016/J.Jsb.2008.04.006  1
2008 Bartesaghi A, Sprechmann P, Liu J, Randall G, Sapiro G, Subramaniam S. Classification and 3D averaging with missing wedge correction in biological electron tomography. Journal of Structural Biology. 162: 436-50. PMID 18440828 DOI: 10.1016/J.Jsb.2008.02.008  1
2008 Lengyel JS, Milne JL, Subramaniam S. Electron tomography in nanoparticle imaging and analysis. Nanomedicine (London, England). 3: 125-31. PMID 18393671 DOI: 10.2217/17435889.3.1.125  1
2008 Lengyel JS, Stott KM, Wu X, Brooks BR, Balbo A, Schuck P, Perham RN, Subramaniam S, Milne JL. Extended polypeptide linkers establish the spatial architecture of a pyruvate dehydrogenase multienzyme complex. Structure (London, England : 1993). 16: 93-103. PMID 18184587 DOI: 10.1016/J.Str.2007.10.017  1
2008 Nanavati D, Gucek M, Milne JL, Subramaniam S, Markey SP. Stoichiometry and absolute quantification of proteins with mass spectrometry using fluorescent and isotope-labeled concatenated peptide standards. Molecular & Cellular Proteomics : McP. 7: 442-7. PMID 18029347 DOI: 10.1074/Mcp.M700345-Mcp200  1
2007 Subramaniam S, Bartesaghi A, Liu J, Bennett AE, Sougrat R. Electron tomography of viruses. Current Opinion in Structural Biology. 17: 596-602. PMID 17964134 DOI: 10.1016/J.Sbi.2007.09.009  1
2007 Liu J, McBride MJ, Subramaniam S. Cell surface filaments of the gliding bacterium Flavobacterium johnsoniae revealed by cryo-electron tomography. Journal of Bacteriology. 189: 7503-6. PMID 17693495 DOI: 10.1128/Jb.00957-07  1
2007 Bennett A, Liu J, Van Ryk D, Bliss D, Arthos J, Henderson RM, Subramaniam S. Cryoelectron tomographic analysis of an HIV-neutralizing protein and its complex with native viral gp120. The Journal of Biological Chemistry. 282: 27754-9. PMID 17599917 DOI: 10.1074/Jbc.M702025200  1
2007 Sougrat R, Bartesaghi A, Lifson JD, Bennett AE, Bess JW, Zabransky DJ, Subramaniam S. Electron tomography of the contact between T cells and SIV/HIV-1: implications for viral entry. Plos Pathogens. 3: e63. PMID 17480119 DOI: 10.1371/Journal.Ppat.0030063  1
2007 Zhang P, Khursigara CM, Hartnell LM, Subramaniam S. Direct visualization of Escherichia coli chemotaxis receptor arrays using cryo-electron microscopy. Proceedings of the National Academy of Sciences of the United States of America. 104: 3777-81. PMID 17360429 DOI: 10.1073/Pnas.0610106104  0.32
2007 Zhang P, Weis RM, Peters PJ, Subramaniam S. Electron tomography of bacterial chemotaxis receptor assemblies. Methods in Cell Biology. 79: 373-84. PMID 17327165 DOI: 10.1016/S0091-679X(06)79014-8  1
2007 Lefman J, Morrison R, Subramaniam S. Automated 100-position specimen loader and image acquisition system for transmission electron microscopy. Journal of Structural Biology. 158: 318-26. PMID 17240161 DOI: 10.1016/J.Jsb.2006.11.007  1
2006 Subramaniam S. The SIV surface spike imaged by electron tomography: one leg or three? Plos Pathogens. 2. PMID 16933994 DOI: 10.1371/Journal.Ppat.0020091  1
2006 Heymann JA, Hayles M, Gestmann I, Giannuzzi LA, Lich B, Subramaniam S. Site-specific 3D imaging of cells and tissues with a dual beam microscope. Journal of Structural Biology. 155: 63-73. PMID 16713294 DOI: 10.1016/J.Jsb.2006.03.006  1
2006 Milne JL, Wu X, Borgnia MJ, Lengyel JS, Brooks BR, Shi D, Perham RN, Subramaniam S. Molecular structure of a 9-MDa icosahedral pyruvate dehydrogenase subcomplex containing the E2 and E3 enzymes using cryoelectron microscopy. The Journal of Biological Chemistry. 281: 4364-70. PMID 16308322 DOI: 10.1074/Jbc.M504363200  1
2006 Subramaniam S. Bridging the imaging gap in nanobiology with three-dimensional electron microscopy 2nd Asm-Ieee Embs Conference On Bio-, Micro- and Nanosystems. 37. DOI: 10.1017/S1431927606069194  1
2006 Milne JLS, Wu X, Borgnia MJ, Lengyel JS, Shi D, Perham RN, Subramaniam S. Structure and function of icosahedral pyruvate dehydrogenase complexes Microscopy and Microanalysis. 12: 26-27. DOI: 10.1017/S1431927606069145  1
2006 Lefman J, Morrison R, Subramaniam S. Automated, 100-specimen loading and imaging system for transmission electron microscopy Microscopy and Microanalysis. 12: 1100-1101. DOI: 10.1017/S143192760606291X  1
2005 Bartesaghi A, Sapiro G, Subramaniam S. An energy-based three-dimensional segmentation approach for the quantitative interpretation of electron tomograms. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. 14: 1314-23. PMID 16190467 DOI: 10.1109/Tip.2005.852467  1
2005 Subramaniam S. Bridging the imaging gap: Visualizing subcellular architecture with electron tomography Current Opinion in Microbiology. 8: 316-322. PMID 15939356 DOI: 10.1016/J.Mib.2005.04.012  1
2005 Zhang P, Land W, Lee S, Juliani J, Lefman J, Smith SR, Germain D, Kessel M, Leapman R, Rouault TA, Subramaniam S. Electron tomography of degenerating neurons in mice with abnormal regulation of iron metabolism Journal of Structural Biology. 150: 144-153. PMID 15866737 DOI: 10.1016/J.Jsb.2005.01.007  1
2004 Hirai T, Subramaniam S. Structure and transport mechanism of the bacterial oxalate transporter OxIT Biophysical Journal. 87: 3600-3607. PMID 15339805 DOI: 10.1529/Biophysj.104.049320  1
2004 Lefman J, Zhang P, Hirai T, Weis RM, Juliani J, Bliss D, Kessel M, Bos E, Peters PJ, Subramaniam S. Three-dimensional electron microscopic imaging of membrane invaginations in Escherichia coli overproducing the chemotaxis receptor Tsr. Journal of Bacteriology. 186: 5052-61. PMID 15262942 DOI: 10.1128/Jb.186.15.5052-5061.2004  1
2004 Subramaniam S, Milne JLS. Three-dimensional electron microscopy at molecular resolution Annual Review of Biophysics and Biomolecular Structure. 33: 141-155. PMID 15139808 DOI: 10.1146/Annurev.Biophys.33.110502.140339  1
2003 Hirai T, Subramaniam S. Structural insights into the mechanism of proton pumping by bacteriorhodopsin Febs Letters. 545: 2-8. PMID 12788485 DOI: 10.1016/S0014-5793(03)00386-7  1
2003 Weis RM, Hirai T, Chalah A, Kessel M, Peters PJ, Subramaniam S. Electron microscopic analysis of membrane assemblies formed by the bacterial chemotaxis receptor Tsr. Journal of Bacteriology. 185: 3636-43. PMID 12775701 DOI: 10.1128/Jb.185.12.3636-3643.2003  1
2003 Wu X, Milne JLS, Borgnia MJ, Rostapshov AV, Subramaniam S, Brooks BR. A core-weighted fitting method for docking atomic structures into low-resolution maps: Application to cryo-electron microscopy Journal of Structural Biology. 141: 63-76. PMID 12576021 DOI: 10.1016/S1047-8477(02)00570-1  1
2003 Zhang P, Lefman J, Kessel M, Juliani J, Hirai T, Weis RM, Peters P, Subramaniam S. 3D imaging of membrane networks in a bacterial cell using electron tomography Microscopy and Microanalysis. 9: 1168-1169. DOI: 10.1017/S1431927603445844  1
2002 Milne JL, Shi D, Rosenthal PB, Sunshine JS, Domingo GJ, Wu X, Brooks BR, Perham RN, Henderson R, Subramaniam S. Molecular architecture and mechanism of an icosahedral pyruvate dehydrogenase complex: a multifunctional catalytic machine. The Embo Journal. 21: 5587-98. PMID 12411477 DOI: 10.1093/Emboj/Cdf574  1
2002 Tittor J, Paula S, Subramaniam S, Heberle J, Henderson R, Oesterhelt D. Proton translocation by bacteriorhodopsin in the absence of substantial conformational changes. Journal of Molecular Biology. 319: 555-65. PMID 12051928 DOI: 10.1016/S0022-2836(02)00307-8  1
2002 Subramaniam S, Shi D, Perham RN, Milne JLS. Molecular structure of an icosahedral pyruvate dehydrogenase complex Microscopy and Microanalysis. 8: 214-215. DOI: 10.1017/S143192760210033X  1
2000 Heymann JAW, Subramaniam S. Integration of deletion mutants of bovine rhodopsin into the membrane of the endoplasmic reticulum Molecular Membrane Biology. 17: 165-174. PMID 11128975 DOI: 10.1080/09687680050197392  1
2000 Subramaniam S, Henderson R. Crystallographic analysis of protein conformational changes in the bacteriorhodopsin photocycle Biochimica Et Biophysica Acta - Bioenergetics. 1460: 157-165. PMID 10984597 DOI: 10.1016/S0005-2728(00)00136-5  1
1999 Subramaniam S, Henderson R. Electron crystallography of bacteriorhodopsin with millisecond time resolution Journal of Structural Biology. 128: 19-25. PMID 10600554 DOI: 10.1006/Jsbi.1999.4178  1
1999 Subramaniam S. The structure of bacteriorhodopsin: An emerging consensus Current Opinion in Structural Biology. 9: 462-468. PMID 10449372 DOI: 10.1016/S0959-440X(99)80065-7  1
1999 Subramaniam S, Lindahl M, Bullough P, Faruqi AR, Tittor J, Oesterhelt D, Brown L, Lanyi J, Henderson R. Protein conformational changes in the bacteriorhodopsin photocycle Journal of Molecular Biology. 287: 145-161. PMID 10074413 DOI: 10.1006/Jmbi.1999.2589  1
1997 Delaney JK, Yahalom G, Sheves M, Subramaniam S. Reducing the flexibility of retinal restores a wild-type-like photocycle in bacteriorhodopsin mutants defective in protein-retinal coupling Proceedings of the National Academy of Sciences of the United States of America. 94: 5028-5033. PMID 9144184 DOI: 10.1073/Pnas.94.10.5028  1
1997 Heymann JAW, Subramaniam S. Expression, stability, and membrane integration of truncation mutants of bovine rhodopsin Proceedings of the National Academy of Sciences of the United States of America. 94: 4966-4971. PMID 9144173 DOI: 10.1073/Pnas.94.10.4966  1
1997 Subramaniam S, Faruqi AR, Oesterhelt D, Henderson R. Electron diffraction studies of light-induced conformational changes in the Leu-93 → Ala bacteriorhodopsin mutant Proceedings of the National Academy of Sciences of the United States of America. 94: 1767-1772. PMID 9050853 DOI: 10.1073/Pnas.94.5.1767  1
1997 Kiselev A, Subramaniam S. Studies of rh1 metarhodopsin stabilization in wild-type drosophila and in mutants lacking one or both arrestins Biochemistry. 36: 2188-2196. PMID 9047319 DOI: 10.1021/Bi9621268  1
1996 Delaney JK, Subramaniam S. The residues Leu 93 and Asp 96 act independently in the bacteriorhodopsin photocycle: Studies with the Leu 93→Ala, Asp 96→Asn double mutant Biophysical Journal. 70: 2366-2372. PMID 9172761 DOI: 10.1016/S0006-3495(96)79803-X  1
1996 Kiselev A, Subramaniam S. Modulation of arrestin release in the light-driven regeneration of Rh1 Drosophila rhodopsin Biochemistry. 35: 1848-1855. PMID 8639666 DOI: 10.1021/Bi951399K  1
1994 Kiselev A, Subramaniam S. Activation and regeneration of rhodopsin in the insect visual cycle Science. 266: 1369-1373. PMID 7973725 DOI: 10.1126/Science.7973725  1
1991 Subramaniam S, Marti T, Rösselet SJ, Rothschild KJ, Gobind Khorana H. The reaction of hydroxylamine with bacteriorhodopsin studied with mutants that have altered photocycles: Selective reactivity of different photointermediates Proceedings of the National Academy of Sciences of the United States of America. 88: 2583-2587. PMID 2006195 DOI: 10.1073/Pnas.88.6.2583  1
1991 Subramaniam S, Greenhalgh DA, Rath P, Rothschild KJ, Khorana HG. Replacement of leucine-93 by alanine or threonine slows down the decay of the N and O intermediates in the photocycle of bacteriorhodopsin: implications for proton uptake and 13-cis-retinal----all-trans-retinal reisomerization. Proceedings of the National Academy of Sciences of the United States of America. 88: 6873-7. PMID 1650486 DOI: 10.1073/Pnas.88.15.6873  1
1987 Subramaniam S, McConnell HM. Critical mixing in monolayer mixtures of phospholipid and cholesterol Journal of Physical Chemistry. 91: 1715-1718. DOI: 10.1021/J100291A010  1
1986 Subramaniam S, Seul M, McConnell HM. Lateral diffusion of specific antibodies bound to lipid monolayers on alkylated substrates. Proceedings of the National Academy of Sciences of the United States of America. 83: 1169-73. PMID 3006037 DOI: 10.1073/Pnas.83.5.1169  0.64
1985 Seul M, Subramaniam S, McConnell HM. Mono- and bilayers of phospholipids at interfaces: Interlayer coupling and phase stability Journal of Physical Chemistry. 89: 3592-3595. DOI: 10.1021/J100263A003  1
Show low-probability matches.