Lloyd M. Smith - Publications

Chemistry University of Wisconsin, Madison, Madison, WI 
surface chemistry, mass spectrometry

241 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Schaffer LV, Millikin RJ, Shortreed MR, Scalf M, Smith LM. Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data. Journal of Proteome Research. PMID 32584579 DOI: 10.1021/acs.jproteome.0c00332  0.88
2020 Millikin RJ, Shortreed MR, Scalf M, Smith LM. A Bayesian Null Interval Hypothesis Test Controls False Discovery Rates and Improves Sensitivity in Label-Free Quantitative Proteomics. Journal of Proteome Research. PMID 32243168 DOI: 10.1021/acs.jproteome.9b00796  0.88
2019 Gemperline DC, Marshall RS, Lee KH, Zhao Q, Hu W, McLoughlin F, Scalf M, Smith LM, Vierstra RD. Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in . The Journal of Biological Chemistry. PMID 31562246 DOI: 10.1074/jbc.RA119.010219  0.6
2019 Dai Y, Buxton KE, Schaffer LV, Miller RM, Millikin RJ, Scalf M, Frey BL, Shortreed MR, Smith LM. Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global PTM Discovery Database. Journal of Proteome Research. PMID 31479276 DOI: 10.1021/acs.jproteome.9b00339  0.88
2019 Smith LM, Thomas PM, Shortreed MR, Schaffer LV, Fellers RT, LeDuc RD, Tucholski T, Ge Y, Agar JN, Anderson LC, Chamot-Rooke J, Gault J, Loo JA, Paša-Tolić L, Robinson CV, et al. A five-level classification system for proteoform identifications. Nature Methods. PMID 31451767 DOI: 10.1038/s41592-019-0573-x  0.88
2019 Rolfs Z, Müller M, Shortreed MR, Smith LM, Bassani-Sternberg M. Comment on "A subset of HLA-I peptides are not genomically templated: Evidence for cis- and trans-spliced peptide ligands". Science Immunology. 4. PMID 31420320 DOI: 10.1126/sciimmunol.aaw1622  0.88
2019 Schaffer LV, Tucholski T, Shortreed MR, Ge Y, Smith LM. Intact-Mass Analysis Facilitates the Identification of Large Human Heart Proteoforms. Analytical Chemistry. PMID 31393705 DOI: 10.1021/acs.analchem.9b02343  0.88
2019 Miller RM, Millikin RJ, Hoffmann CV, Solntsev SK, Sheynkman GM, Shortreed MR, Smith LM. Improved Protein Inference from Multiple Protease Bottom-Up Mass Spectrometry Data. Journal of Proteome Research. PMID 31378069 DOI: 10.1021/acs.jproteome.9b00330  0.88
2019 Spiniello M, Steinbrink MI, Cesnik AJ, Miller RM, Scalf M, Shortreed MR, Smith LM. Comprehensive in vivo identification of the c-Myc mRNA interactome using HyPR-MS. Rna (New York, N.Y.). PMID 31296583 DOI: 10.1261/rna.072157.119  0.88
2019 Donnelly DP, Rawlins CM, DeHart CJ, Fornelli L, Schachner LF, Lin Z, Lippens JL, Aluri KC, Sarin R, Chen B, Lantz C, Jung W, Johnson KR, Koller A, Wolff JJ, ... ... Smith LM, et al. Best practices and benchmarks for intact protein analysis for top-down mass spectrometry. Nature Methods. 16: 587-594. PMID 31249407 DOI: 10.1038/s41592-019-0457-0  0.48
2019 Ling C, Nishimoto K, Rolfs Z, Smith LM, Frey BL, Welham NV. Differentiated fibrocytes assume a functional mesenchymal phenotype with regenerative potential. Science Advances. 5: eaav7384. PMID 31086819 DOI: 10.1126/sciadv.aav7384  0.8
2019 Schaffer LV, Millikin RJ, Miller RM, Anderson LC, Fellers RT, Ge Y, Kelleher NL, LeDuc RD, Liu X, Payne SH, Sun L, Thomas PM, Tucholski T, Wang Z, Wu S, ... ... Smith LM, et al. Identification and Quantification of Proteoforms by Mass Spectrometry. Proteomics. e1800361. PMID 31050378 DOI: 10.1002/pmic.201800361  0.88
2019 Mayer KS, Chen X, Sanders D, Chen J, Jiang J, Nguyen P, Scalf M, Smith LM, Zhong X. HDA9-PWR-HOS15 is a core histone deacetylase complex regulating transcription and development. Plant Physiology. PMID 30765479 DOI: 10.1104/pp.18.01156  0.72
2018 Rolfs Z, Solntsev SK, Shortreed MR, Frey BL, Smith LM. Global Identification of Post-Translationally Spliced Peptides with Neo-Fusion. Journal of Proteome Research. PMID 30346791 DOI: 10.1021/acs.jproteome.8b00651  0.88
2018 Schaffer LV, Rensvold JW, Shortreed MR, Cesnik AJ, Jochem A, Scalf M, Frey BL, Pagliarini DJ, Smith LM. Identification and Quantification of Murine Mitochondrial Proteoforms Using an Integrated Top-Down and Intact-Mass Strategy. Journal of Proteome Research. PMID 30180576 DOI: 10.1021/acs.jproteome.8b00469  0.88
2018 Yang Z, Qian S, Scheid RN, Lu L, Chen X, Liu R, Du X, Lv X, Boersma MD, Scalf M, Smith LM, Denu JM, Du J, Zhong X. EBS is a bivalent histone reader that regulates floral phase transition in Arabidopsis. Nature Genetics. PMID 30082787 DOI: 10.1038/s41588-018-0187-8  0.72
2018 Spiniello M, Knoener RA, Steinbrink MI, Yang B, Cesnik AJ, Buxton KE, Scalf M, Jarrard DF, Smith LM. HyPR-MS for multiplexed discovery of MALAT1, NEAT1, and NORAD lncRNA protein interactomes. Journal of Proteome Research. PMID 29972301 DOI: 10.1021/acs.jproteome.8b00189  0.88
2018 Guillen-Ahlers H, Rao PK, Perumalla DS, Montoya MJ, Jadhav AYL, Shortreed MR, Smith LM, Olivier M. Adaptation of Hybridization Capture of Chromatin-associated Proteins for Proteomics to Mammalian Cells. Journal of Visualized Experiments : Jove. PMID 29912191 DOI: 10.3791/57140  0.88
2018 Lu L, Millikin RJ, Solntsev SK, Rolfs Z, Scalf M, Shortreed MR, Smith LM. Identification of MS-Cleavable and Non-Cleavable Chemically Crosslinked Peptides with MetaMorpheus. Journal of Proteome Research. PMID 29793340 DOI: 10.1021/acs.jproteome.8b00141  0.88
2018 Cesnik AJ, Yang B, Truong A, Etheridge T, Spiniello M, Steinbrink MI, Shortreed MR, Frey BL, Jarrard DF, Smith LM. Long Noncoding RNAs AC009014.3 and Newly Discovered XPLAID Differentiate Aggressive and Indolent Prostate Cancers. Translational Oncology. 11: 808-814. PMID 29723810 DOI: 10.1016/j.tranon.2018.04.002  0.88
2018 Rytz TC, Miller MJ, McLoughlin F, Augustine RC, Marshall RS, Juan YT, Charng YY, Scalf M, Smith LM, Vierstra RD. SUMOylome Profiling Reveals a Diverse Array of Nuclear Targets Modified by the SUMO Ligase SIZ1 During Heat Stress. The Plant Cell. PMID 29588388 DOI: 10.1105/tpc.17.00993  0.6
2018 Solntsev SK, Shortreed MR, Frey BL, Smith LM. Enhanced Global PTM Discovery (G-PTM-D) with MetaMorpheus. Journal of Proteome Research. PMID 29578715 DOI: 10.1021/acs.jproteome.7b00873  0.88
2018 Aebersold R, Agar JN, Amster IJ, Baker MS, Bertozzi CR, Boja ES, Costello CE, Cravatt BF, Fenselau C, Garcia BA, Ge Y, Gunawardena J, Hendrickson RC, Hergenrother PJ, Huber CG, ... ... Smith LM, et al. How many human proteoforms are there? Nature Chemical Biology. 14: 206-214. PMID 29443976 DOI: 10.1038/nchembio.2576  0.48
2018 LeDuc RD, Schwämmle V, Shortreed MR, Cesnik AJ, Solntsev SK, Shaw JB, Martin MJ, Vizcaíno JA, Alpi E, Danis P, Kelleher NL, Smith LM, Ge Y, Agar JN, Chamot-Rooke J, et al. ProForma: a Standard Proteoform Notation. Journal of Proteome Research. PMID 29397739 DOI: 10.1021/acs.jproteome.7b00851  0.88
2018 Zaidan NZ, Walker KJ, Brown JE, Schaffer LV, Scalf M, Shortreed MR, Iyer G, Smith LM, Sridharan R. Compartmentalization of HP1 Proteins in Pluripotency Acquisition and Maintenance. Stem Cell Reports. PMID 29358085 DOI: 10.1016/j.stemcr.2017.12.016  0.88
2018 Chen X, Lu L, Qian S, Scalf M, Smith LM, Zhong X. Canonical and Non-canonical Actions of Arabidopsis Histone Deacetylases in Ribosomal RNA Processing. The Plant Cell. PMID 29343504 DOI: 10.1105/tpc.17.00626  0.72
2017 Schaffer LV, Shortreed MR, Cesnik AJ, Frey BL, Solntsev SK, Scalf M, Smith LM. Expanding Proteoform Identifications in Top-Down Proteomic Analyses by Constructing Proteoform Families. Analytical Chemistry. PMID 29227670 DOI: 10.1021/acs.analchem.7b04221  0.88
2017 Knoener RA, Becker JT, Scalf M, Sherer NM, Smith LM. Elucidating the in vivo interactome of HIV-1 RNA by hybridization capture and mass spectrometry. Scientific Reports. 7: 16965. PMID 29208937 DOI: 10.1038/s41598-017-16793-5  0.6
2017 Cesnik AJ, Shortreed MR, Schaffer LV, Knoener RA, Frey BL, Scalf M, Solntsev SK, Dai Y, Gasch AP, Smith LM. Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families. Journal of Proteome Research. PMID 29195273 DOI: 10.1021/acs.jproteome.7b00685  0.88
2017 Kim SH, Stiles SG, Feichtmeier JM, Ramesh N, Zhan L, Scalf MA, Smith LM, Pandey UB, Tibbetts RS. Mutation-dependent aggregation and toxicity in a Drosophila model for UBQLN2-associated ALS. Human Molecular Genetics. PMID 29161404 DOI: 10.1093/hmg/ddx403  0.64
2017 Proffitt JM, Glenn J, Cesnik AJ, Jadhav A, Shortreed MR, Smith LM, Kavanagh K, Cox LA, Olivier M. Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys. Bmc Genomics. 18: 877. PMID 29132314 DOI: 10.1186/s12864-017-4279-0  0.88
2017 Millikin RJ, Solntsev SK, Shortreed MR, Smith LM. Ultrafast Peptide Label-Free Quantification with FlashLFQ. Journal of Proteome Research. PMID 29083185 DOI: 10.1021/acs.jproteome.7b00608  0.88
2017 Dai Y, Shortreed MR, Scalf M, Frey BL, Cesnik AJ, Solntsev S, Schaffer LV, Smith LM. Elucidating E. coli Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database. Journal of Proteome Research. PMID 28968100 DOI: 10.1021/acs.jproteome.7b00516  0.88
2017 Holden MT, Carter MCD, Ting SK, Lynn DM, Smith LM. Parallel DNA Synthesis on Poly(ethylene terephthalate). Chembiochem : a European Journal of Chemical Biology. PMID 28763573 DOI: 10.1002/cbic.201700321  0.4
2017 Buxton KE, Kennedy-Darling J, Shortreed MR, Zaidan NZ, Olivier M, Scalf M, Sridharan R, Smith LM. Elucidating Protein-DNA Interactions in Human Alphoid Chromatin via Hybridization Capture and Mass Spectrometry. Journal of Proteome Research. PMID 28704058 DOI: 10.1021/acs.jproteome.7b00448  0.88
2017 Dai Y, Kennedy-Darling J, Shortreed MR, Scalf M, Gasch AP, Smith LM. Multiplexed Sequence-Specific Capture of Chromatin and Mass Spectrometric Discovery of Associated Proteins. Analytical Chemistry. PMID 28654248 DOI: 10.1021/acs.analchem.7b01784  0.88
2017 Shortreed MR, Frey BL, Scalf M, Knoener RA, Cesnik AJ, Smith LM. Correction to "Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements". Journal of Proteome Research. PMID 28608680 DOI: 10.1021/acs.jproteome.7b00333  0.88
2017 Aguilar-Hernández V, Kim DY, Stankey RJ, Scalf M, Smith LM, Vierstra RD. Mass Spectrometric Analyses Reveal a Central Role for Ubiquitylation in Remodeling the Arabidopsis Proteome During Photomorphogenesis. Molecular Plant. PMID 28461270 DOI: 10.1016/j.molp.2017.04.008  0.6
2017 Li Q, Shortreed MR, Wenger CD, Frey BL, Schaffer LV, Scalf M, Smith LM. Global Post-Translational Modification Discovery. Journal of Proteome Research. PMID 28248113 DOI: 10.1021/acs.jproteome.6b00034  0.88
2016 Keller MP, Paul PK, Rabaglia ME, Stapleton DS, Schueler KL, Broman AT, Ye SI, Leng N, Brandon CJ, Neto EC, Plaisier CL, Simonett SP, Kebede MA, Sheynkman GM, Klein MA, ... ... Smith LM, et al. The Transcription Factor Nfatc2 Regulates β-Cell Proliferation and Genes Associated with Type 2 Diabetes in Mouse and Human Islets. Plos Genetics. 12: e1006466. PMID 27935966 DOI: 10.1371/journal.pgen.1006466  0.88
2016 Chen X, Lu L, Mayer KS, Scalf M, Qian S, Lomax A, Smith LM, Zhong X. POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis. Elife. 5. PMID 27873573 DOI: 10.7554/eLife.17214  0.72
2016 Guillen-Ahlers H, Rao PK, Levenstein ME, Kennedy-Darling J, Perumalla DS, Jadhav AY, Glenn JP, Ludwig-Kubinski A, Drigalenko E, Montoya MJ, Göring HH, Anderson CD, Scalf M, Gildersleeve HI, Cole R, ... ... Smith LM, et al. HyCCAPP as a tool to characterize promoter DNA-protein interactions in Saccharomyces cerevisiae. Genomics. PMID 27184763 DOI: 10.1016/j.ygeno.2016.05.002  1
2016 Sheynkman GM, Shortreed MR, Cesnik AJ, Smith LM. Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation. Annual Review of Analytical Chemistry (Palo Alto, Calif.). PMID 27049631 DOI: 10.1146/annurev-anchem-071015-041722  1
2016 Shortreed MR, Frey BL, Scalf M, Knoener RA, Cesnik AJ, Smith LM. Elucidating Proteoform Families from Proteoform Intact Mass and Lysine Count Measurements. Journal of Proteome Research. PMID 26941048 DOI: 10.1021/acs.jproteome.5b01090  1
2016 Gemperline DC, Scalf M, Smith LM, Vierstra RD. Morpheus spectral counter: a computational tool for label-free quantitative mass spectrometry using the morpheus search engine. Proteomics. PMID 26791624 DOI: 10.1002/pmic.201500420  0.6
2015 Li Q, Chang Z, Oliveira G, Xiong M, Smith LM, Frey BL, Welham NV. Protein turnover during in vitro tissue engineering. Biomaterials. 81: 104-113. PMID 26724458 DOI: 10.1016/j.biomaterials.2015.12.004  0.8
2015 Cesnik AJ, Shortreed MR, Sheynkman GM, Frey BL, Smith LM. Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy. Journal of Proteome Research. PMID 26704769 DOI: 10.1021/acs.jproteome.5b00817  1
2015 Ling C, Li Q, Brown ME, Kishimoto Y, Toya Y, Devine EE, Choi KO, Nishimoto K, Norman IG, Tsegyal T, Jiang JJ, Burlingham WJ, Gunasekaran S, Smith LM, Frey BL, et al. Bioengineered vocal fold mucosa for voice restoration. Science Translational Medicine. 7: 314ra187. PMID 26582902 DOI: 10.1126/scitranslmed.aab4014  0.8
2015 Holden MT, Carter MC, Wu CH, Wolfer J, Codner E, Sussman MR, Lynn DM, Smith LM. Photolithographic Synthesis of High-Density DNA and RNA Arrays on Flexible, Transparent, and Easily Sub-Divided Plastic Substrates. Analytical Chemistry. PMID 26494264 DOI: 10.1021/acs.analchem.5b02893  1
2015 Li Q, Uygun BE, Geerts S, Ozer S, Scalf M, Gilpin SE, Ott HC, Yarmush ML, Smith LM, Welham NV, Frey BL. Proteomic analysis of naturally-sourced biological scaffolds. Biomaterials. 75: 37-46. PMID 26476196 DOI: 10.1016/j.biomaterials.2015.10.011  0.8
2015 Shortreed MR, Wenger CD, Frey BL, Sheynkman GM, Scalf M, Keller MP, Attie AD, Smith LM. Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search. Journal of Proteome Research. 14: 4714-20. PMID 26418581 DOI: 10.1021/acs.jproteome.5b00599  0.88
2015 Hoffman EA, Frey BL, Smith LM, Auble DT. Formaldehyde crosslinking: a tool for the study of chromatin complexes. The Journal of Biological Chemistry. PMID 26354429 DOI: 10.1074/jbc.R115.651679  1
2015 Lockett MR, Smith LM. Carbon Substrates: A Stable Foundation for Biomolecular Arrays. Annual Review of Analytical Chemistry (Palo Alto, Calif.). PMID 26048550 DOI: 10.1146/annurev-anchem-071114-040146  1
2015 Arab S, Chi CY, Shi T, Wang Y, Dapkus DP, Jackson HE, Smith LM, Cronin SB. Effects of surface passivation on twin-free GaAs nanosheets. Acs Nano. 9: 1336-40. PMID 25565000 DOI: 10.1021/nn505227q  0.68
2015 Burgess T, Caroff P, Wang Y, Badada BH, Jackson HE, Smith LM, Guo Y, Tan HH, Jagadish C. Zn3As2 nanowires and nanoplatelets: highly efficient infrared emission and photodetection by an earth abundant material. Nano Letters. 15: 378-85. PMID 25426796 DOI: 10.1021/nl5036918  0.68
2015 Yuan X, Caroff P, Wang F, Guo Y, Wang Y, Jackson HE, Smith LM, Tan HH, Jagadish C. Antimony Induced {112}A Faceted Triangular GaAs1-xSbx/InP Core/Shell Nanowires and Their Enhanced Optical Quality Advanced Functional Materials. 25: 5300-5308. DOI: 10.1002/adfm.201501467  0.68
2014 Wang Y, Jackson HE, Smith LM, Burgess T, Paiman S, Gao Q, Tan HH, Jagadish C. Carrier thermalization dynamics in single zincblende and wurtzite InP Nanowires. Nano Letters. 14: 7153-60. PMID 25382815 DOI: 10.1021/nl503747h  0.68
2014 Wu CH, Holden MT, Smith LM. Enzymatic fabrication of high-density RNA arrays. Angewandte Chemie (International Ed. in English). 53: 13514-7. PMID 25339581 DOI: 10.1002/anie.201408747  1
2014 Jagtap PD, Johnson JE, Onsongo G, Sadler FW, Murray K, Wang Y, Shenykman GM, Bandhakavi S, Smith LM, Griffin TJ. Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework. Journal of Proteome Research. 13: 5898-908. PMID 25301683 DOI: 10.1021/pr500812t  1
2014 Kennedy-Darling J, Holden MT, Shortreed MR, Smith LM. Multiplexed programmable release of captured DNA. Chembiochem : a European Journal of Chemical Biology. 15: 2353-6. PMID 25157426 DOI: 10.1002/cbic.201402343  1
2014 Sheynkman GM, Johnson JE, Jagtap PD, Shortreed MR, Onsongo G, Frey BL, Griffin TJ, Smith LM. Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations. Bmc Genomics. 15: 703. PMID 25149441 DOI: 10.1186/1471-2164-15-703  1
2014 Kennedy-Darling J, Guillen-Ahlers H, Shortreed MR, Scalf M, Frey BL, Kendziorski C, Olivier M, Gasch AP, Smith LM. Discovery of Chromatin-Associated Proteins via Sequence-Specific Capture and Mass Spectrometric Protein Identification in Saccharomyces cerevisiae. Journal of Proteome Research. PMID 24999558 DOI: 10.1021/pr5004938  1
2014 Kennedy-Darling J, Smith LM. Measuring the formaldehyde Protein-DNA cross-link reversal rate. Analytical Chemistry. 86: 5678-81. PMID 24848408 DOI: 10.1021/ac501354y  1
2014 Guillen-Ahlers H, Shortreed MR, Smith LM, Olivier M. Advanced methods for the analysis of chromatin-associated proteins. Physiological Genomics. 46: 441-7. PMID 24803678 DOI: 10.1152/physiolgenomics.00041.2014  1
2014 Liu R, Li Q, Smith LM. Detection of large ions in time-of-flight mass spectrometry: effects of ion mass and acceleration voltage on microchannel plate detector response. Journal of the American Society For Mass Spectrometry. 25: 1374-83. PMID 24789774 DOI: 10.1007/s13361-014-0903-2  1
2014 Ladror DT, Frey BL, Scalf M, Levenstein ME, Artymiuk JM, Smith LM. Methylation of yeast ribosomal protein S2 is elevated during stationary phase growth conditions. Biochemical and Biophysical Research Communications. 445: 535-41. PMID 24486316 DOI: 10.1016/j.bbrc.2014.01.040  1
2014 Rhoads TW, Rose CM, Bailey DJ, Riley NM, Molden RC, Nestler AJ, Merrill AE, Smith LM, Hebert AS, Westphall MS, Pagliarini DJ, Garcia BA, Coon JJ. Neutron-encoded mass signatures for quantitative top-down proteomics. Analytical Chemistry. 86: 2314-9. PMID 24475910 DOI: 10.1021/ac403579s  1
2014 Sheynkman GM, Shortreed MR, Frey BL, Scalf M, Smith LM. Large-scale mass spectrometric detection of variant peptides resulting from nonsynonymous nucleotide differences. Journal of Proteome Research. 13: 228-40. PMID 24175627 DOI: 10.1021/pr4009207  1
2013 Torde RG, Therrien AJ, Shortreed MR, Smith LM, Lamos SM. Multiplexed analysis of cage and cage free chicken egg fatty acids using stable isotope labeling and mass spectrometry. Molecules (Basel, Switzerland). 18: 14977-88. PMID 24317525 DOI: 10.3390/molecules181214977  1
2013 Frey BL, Ladror DT, Sondalle SB, Krusemark CJ, Jue AL, Coon JJ, Smith LM. Chemical derivatization of peptide carboxyl groups for highly efficient electron transfer dissociation. Journal of the American Society For Mass Spectrometry. 24: 1710-21. PMID 23918461 DOI: 10.1007/s13361-013-0701-2  1
2013 Kim DY, Scalf M, Smith LM, Vierstra RD. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. The Plant Cell. 25: 1523-40. PMID 23667124 DOI: 10.1105/tpc.112.108613  1
2013 Sheynkman GM, Shortreed MR, Frey BL, Smith LM. Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq. Molecular & Cellular Proteomics : McP. 12: 2341-53. PMID 23629695 DOI: 10.1074/mcp.O113.028142  1
2013 Russell JD, Scalf M, Book AJ, Ladror DT, Vierstra RD, Smith LM, Coon JJ. Characterization and quantification of intact 26S proteasome proteins by real-time measurement of intrinsic fluorescence prior to top-down mass spectrometry. Plos One. 8: e58157. PMID 23536786 DOI: 10.1371/journal.pone.0058157  1
2013 Smith LM, Kelleher NL. Proteoform: a single term describing protein complexity. Nature Methods. 10: 186-7. PMID 23443629 DOI: 10.1038/nmeth.2369  1
2013 Broderick AH, Carter MC, Lockett MR, Smith LM, Lynn DM. Fabrication of oligonucleotide and protein arrays on rigid and flexible substrates coated with reactive polymer multilayers. Acs Applied Materials & Interfaces. 5: 351-9. PMID 23237360 DOI: 10.1021/am302285n  1
2013 Miller MJ, Scalf M, Rytz TC, Hubler SL, Smith LM, Vierstra RD. Quantitative proteomics reveals factors regulating RNA biology as dynamic targets of stress-induced SUMOylation in Arabidopsis. Molecular & Cellular Proteomics : McP. 12: 449-63. PMID 23197790 DOI: 10.1074/mcp.M112.025056  1
2013 Welham NV, Chang Z, Smith LM, Frey BL. Proteomic analysis of a decellularized human vocal fold mucosa scaffold using 2D electrophoresis and high-resolution mass spectrometry. Biomaterials. 34: 669-76. PMID 23102991 DOI: 10.1016/j.biomaterials.2012.09.050  1
2012 Sturm R, Sheynkman G, Booth C, Smith LM, Pedersen JA, Li L. Absolute quantification of prion protein (90-231) using stable isotope-labeled chymotryptic peptide standards in a LC-MRM AQUA workflow. Journal of the American Society For Mass Spectrometry. 23: 1522-33. PMID 22714949 DOI: 10.1007/s13361-012-0411-1  1
2012 Broderick AH, Lockett MR, Buck ME, Yuan Y, Smith LM, Lynn DM. In situ Synthesis of Oligonucleotide Arrays on Surfaces Coated with Crosslinked Polymer Multilayers. Chemistry of Materials : a Publication of the American Chemical Society. 24: 939-945. PMID 22611305 DOI: 10.1021/cm202720q  1
2012 Wu CH, Lockett MR, Smith LM. RNA-mediated gene assembly from DNA arrays. Angewandte Chemie (International Ed. in English). 51: 4628-32. PMID 22473711 DOI: 10.1002/anie.201109058  1
2011 Wu CH, Chen S, Shortreed MR, Kreitinger GM, Yuan Y, Frey BL, Zhang Y, Mirza S, Cirillo LA, Olivier M, Smith LM. Sequence-specific capture of protein-DNA complexes for mass spectrometric protein identification. Plos One. 6: e26217. PMID 22028835 DOI: 10.1371/journal.pone.0026217  1
2011 Park J, Qin H, Scalf M, Hilger RT, Westphall MS, Smith LM, Blick RH. A mechanical nanomembrane detector for time-of-flight mass spectrometry. Nano Letters. 11: 3681-4. PMID 21806063 DOI: 10.1021/nl201645u  1
2011 Olson CN, Galloway MM, Yu G, Hedman CJ, Lockett MR, Yoon T, Stone EA, Smith LM, Keutsch FN. Hydroxycarboxylic acid-derived organosulfates: synthesis, stability, and quantification in ambient aerosol. Environmental Science & Technology. 45: 6468-74. PMID 21682266 DOI: 10.1021/es201039p  1
2011 Smith LM, Shortreed MR, Olivier M. To understand the whole, you must know the parts: unraveling the roles of protein-DNA interactions in genome regulation. The Analyst. 136: 3060-5. PMID 21629937 DOI: 10.1039/c1an15037e  0.88
2011 Krusemark CJ, Frey BL, Smith LM, Belshaw PJ. Complete chemical modification of amine and acid functional groups of peptides and small proteins. Methods in Molecular Biology (Clifton, N.J.). 753: 77-91. PMID 21604117 DOI: 10.1007/978-1-61779-148-2_6  0.8
2011 Jarecki JL, Frey BL, Smith LM, Stretton AO. Discovery of neuropeptides in the nematode Ascaris suum by database mining and tandem mass spectrometry. Journal of Proteome Research. 10: 3098-106. PMID 21524146 DOI: 10.1021/pr2001176  1
2011 Russell JD, Hilger RT, Ladror DT, Tervo MA, Scalf M, Shortreed MR, Coon JJ, Smith LM. Parallel detection of intrinsic fluorescence from peptides and proteins for quantification during mass spectrometric analysis. Analytical Chemistry. 83: 2187-93. PMID 21314137 DOI: 10.1021/ac103023q  1
2011 Hallows WC, Yu W, Smith BC, Devries MK, Devires MK, Ellinger JJ, Someya S, Shortreed MR, Prolla T, Markley JL, Smith LM, Zhao S, Guan KL, Denu JM. Sirt3 promotes the urea cycle and fatty acid oxidation during dietary restriction. Molecular Cell. 41: 139-49. PMID 21255725 DOI: 10.1016/j.molcel.2011.01.002  1
2010 Kulevich SE, Frey BL, Kreitinger G, Smith LM. Alkylating tryptic peptides to enhance electrospray ionization mass spectrometry analysis. Analytical Chemistry. 82: 10135-42. PMID 21114270 DOI: 10.1021/ac1019792  1
2010 Lockett MR, Smith LM. Halogenation of carbon substrates for increased reactivity with alkenes. Langmuir : the Acs Journal of Surfaces and Colloids. 26: 16642-6. PMID 20925329 DOI: 10.1021/la103050z  1
2010 Lockett MR, Smith LM. The Formation and Stability of Alkylthiol Monolayers on Carbon Substrates. The Journal of Physical Chemistry. C, Nanomaterials and Interfaces. 114: 12635-12641. PMID 20706614 DOI: 10.1021/jp102821x  1
2010 Book AJ, Gladman NP, Lee SS, Scalf M, Smith LM, Vierstra RD. Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes. The Journal of Biological Chemistry. 285: 25554-69. PMID 20516081 DOI: 10.1074/jbc.M110.136622  1
2010 Smith LM. Nanotechnology: Molecular robots on the move. Nature. 465: 167-8. PMID 20463724 DOI: 10.1038/465167a  1
2010 Mellors JS, Jorabchi K, Smith LM, Ramsey JM. Integrated microfluidic device for automated single cell analysis using electrophoretic separation and electrospray ionization mass spectrometry. Analytical Chemistry. 82: 967-73. PMID 20058879 DOI: 10.1021/ac902218y  1
2009 Lockett MR, Smith LM. Fabrication and characterization of DNA arrays prepared on carbon-on-metal substrates. Analytical Chemistry. 81: 6429-37. PMID 20020675 DOI: 10.1021/ac900807q  1
2009 Jorabchi K, Smith LM. Single droplet separations and surface partition coefficient measurements using laser ablation mass spectrometry. Analytical Chemistry. 81: 9682-8. PMID 19886638 DOI: 10.1021/ac901819r  1
2009 Mandir JB, Lockett MR, Phillips MF, Allawi HT, Lyamichev VI, Smith LM. Rapid determination of RNA accessible sites by surface plasmon resonance detection of hybridization to DNA arrays. Analytical Chemistry. 81: 8949-56. PMID 19874056 DOI: 10.1021/ac9015962  1
2009 Chen S, Smith LM. Photopatterned thiol surfaces for biomolecule immobilization. Langmuir : the Acs Journal of Surfaces and Colloids. 25: 12275-82. PMID 19821627 DOI: 10.1021/la9017135  1
2009 Lockett MR, Smith LM. Attaching molecules to chlorinated and brominated amorphous carbon substrates via Grignard reactions. Langmuir : the Acs Journal of Surfaces and Colloids. 25: 3340-3. PMID 19708232 DOI: 10.1021/la8039626  1
2009 Krusemark CJ, Frey BL, Belshaw PJ, Smith LM. Modifying the charge state distribution of proteins in electrospray ionization mass spectrometry by chemical derivatization. Journal of the American Society For Mass Spectrometry. 20: 1617-25. PMID 19481956 DOI: 10.1016/j.jasms.2009.04.017  0.8
2009 Lockett MR, Carlisle JC, Le DV, Smith LM. Acyl chloride-modified amorphous carbon substrates for the attachment of alcohol-, thiol-, and amine-containing molecules. Langmuir : the Acs Journal of Surfaces and Colloids. 25: 5120-6. PMID 19317418 DOI: 10.1021/la804140r  1
2009 Saracco SA, Hansson M, Scalf M, Walker JM, Smith LM, Vierstra RD. Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 59: 344-58. PMID 19292762 DOI: 10.1111/j.1365-313X.2009.03862.x  1
2009 Chen S, Phillips MF, Cerrina F, Smith LM. Controlling oligonucleotide surface density in light-directed DNA array fabrication. Langmuir : the Acs Journal of Surfaces and Colloids. 25: 6570-5. PMID 19281155 DOI: 10.1021/la9000297  1
2009 Lockett MR, Smith LM. Attaching Molecules to Chlorinated and Brominated Amorphous Carbon Substrates via Grignard Reactions. Langmuir : the Acs Journal of Surfaces and Colloids. 25: 3340-3343. PMID 19209862 DOI: 10.1021/la8039626  1
2008 Frey BL, Krusemark CJ, Ledvina AR, Coon JJ, Belshaw PJ, Smith LM. Ion-Ion Reactions with Fixed-Charge Modified Proteins to Produce Ions in a Single, Very High Charge State. International Journal of Mass Spectrometry. 276: 136-143. PMID 19802328 DOI: 10.1016/j.ijms.2008.07.029  1
2008 Lee JE, Mirza SP, Didier DN, Scalf M, Olivier M, Greene AS, Smith LM. Identification of cell surface markers to differentiate rat endothelial and fibroblast cells using lectin arrays and LC-ESI-MS/MS. Analytical Chemistry. 80: 8269-75. PMID 18821777 DOI: 10.1021/ac801390b  1
2008 Levenstein ME, Berggren WT, Lee JE, Conard KR, Llanas RA, Wagner RJ, Smith LM, Thomson JA. Secreted proteoglycans directly mediate human embryonic stem cell-basic fibroblast growth factor 2 interactions critical for proliferation. Stem Cells (Dayton, Ohio). 26: 3099-107. PMID 18802039 DOI: 10.1634/stemcells.2007-1056  1
2008 Lockett MR, Shortreed MR, Smith LM. Aldehyde-terminated amorphous carbon substrates for the fabrication of biomolecule arrays. Langmuir : the Acs Journal of Surfaces and Colloids. 24: 9198-203. PMID 18672922 DOI: 10.1021/la800991t  1
2008 Freed JK, Shortreed MR, Kleefisch CJ, Smith LM, Greene AS. Revealing the role of phosphatidylserine in shear stress-mediated protection in endothelial cells. Endothelium : Journal of Endothelial Cell Research. 15: 225-30. PMID 18663626 DOI: 10.1080/10623320802228849  1
2008 Lockett MR, Weibel SC, Phillips MF, Shortreed MR, Sun B, Corn RM, Hamers RJ, Cerrina F, Smith LM. Carbon-on-metal films for surface plasmon resonance detection of DNA arrays. Journal of the American Chemical Society. 130: 8611-3. PMID 18597426 DOI: 10.1021/ja802454c  1
2008 Westphall MS, Jorabchi K, Smith LM. Mass spectrometry of acoustically levitated droplets. Analytical Chemistry. 80: 5847-53. PMID 18582090 DOI: 10.1021/ac800317f  1
2008 Jorabchi K, Westphall MS, Smith LM. Charge assisted laser desorption/ionization mass spectrometry of droplets. Journal of the American Society For Mass Spectrometry. 19: 833-40. PMID 18387311 DOI: 10.1016/j.jasms.2008.02.012  1
2008 Smith LM. Is charge reduction in ESI really necessary? Journal of the American Society For Mass Spectrometry. 19: 629-31. PMID 18374599 DOI: 10.1016/j.jasms.2008.02.002  1
2008 Zhang X, Scalf M, Westphall MS, Smith LM. Membrane protein separation and analysis by supercritical fluid chromatography-mass spectrometry. Analytical Chemistry. 80: 2590-8. PMID 18303916 DOI: 10.1021/ac702319u  0.72
2008 Murray JK, Sadowsky JD, Scalf M, Smith LM, Tomita Y, Gellman SH. Exploration of structure--activity relationships among foldamer ligands for a specific protein binding site via parallel and split-and-mix library synthesis. Journal of Combinatorial Chemistry. 10: 204-15. PMID 18275161 DOI: 10.1021/cc700153z  1
2008 Phillips MF, Lockett MR, Rodesch MJ, Shortreed MR, Cerrina F, Smith LM. In situ oligonucleotide synthesis on carbon materials: stable substrates for microarray fabrication. Nucleic Acids Research. 36: e7. PMID 18084027 DOI: 10.1093/nar/gkm1103  1
2008 Lockett MR, Phillips MF, Jarecki JL, Peelen D, Smith LM. A tetrafluorophenyl activated ester self-assembled monolayer for the immobilization of amine-modified oligonucleotides. Langmuir : the Acs Journal of Surfaces and Colloids. 24: 69-75. PMID 18047381 DOI: 10.1021/la702493u  1
2007 Lee JE, Didier DN, Lockett MR, Scalf M, Greene AS, Olivier M, Smith LM. Characterization of vascular endothelial growth factor receptors on the endothelial cell surface during hypoxia using whole cell binding arrays. Analytical Biochemistry. 369: 241-7. PMID 17624292 DOI: 10.1016/j.ab.2007.06.010  1
2007 Lockett MR, Shortreed MR, Smith LM. Molecular beacon-style hybridization assay for quantitative analysis of surface invasive cleavage reactions. Analytical Chemistry. 79: 6031-6. PMID 17595056 DOI: 10.1021/ac070424c  1
2007 Chen S, Zheng T, Shortreed MR, Alexander C, Smith LM. Analysis of cell surface carbohydrate expression patterns in normal and tumorigenic human breast cell lines using lectin arrays. Analytical Chemistry. 79: 5698-702. PMID 17580952 DOI: 10.1021/ac070423k  1
2007 Hilger RT, Westphall MS, Smith LM. Controlling charge on levitating drops. Analytical Chemistry. 79: 6027-30. PMID 17580951 DOI: 10.1021/ac070413j  1
2007 Lamos SM, Shortreed MR, Frey BL, Belshaw PJ, Smith LM. Relative quantification of carboxylic acid metabolites by liquid chromatography-mass spectrometry using isotopic variants of cholamine. Analytical Chemistry. 79: 5143-9. PMID 17563114 DOI: 10.1021/ac062416m  1
2007 Zheng T, Yu H, Alexander CM, Beebe DJ, Smith LM. Lectin-modified microchannels for mammalian cell capture and purification. Biomedical Microdevices. 9: 611-7. PMID 17516171 DOI: 10.1007/s10544-007-9074-2  1
2006 Sun B, Colavita PE, Kim H, Lockett M, Marcus MS, Smith LM, Hamers RJ. Covalent photochemical functionalization of amorphous carbon thin films for integrated real-time biosensing. Langmuir : the Acs Journal of Surfaces and Colloids. 22: 9598-605. PMID 17073485 DOI: 10.1021/la061749b  1
2006 Frederickson S, Renshaw MW, Lin B, Smith LM, Calveley P, Springhorn JP, Johnson K, Wang Y, Su X, Shen Y, Bowdish KS. A rationally designed agonist antibody fragment that functionally mimics thrombopoietin. Proceedings of the National Academy of Sciences of the United States of America. 103: 14307-12. PMID 16973749 DOI: 10.1073/pnas.0602658103  0.92
2006 Shortreed MR, Lamos SM, Frey BL, Phillips MF, Patel M, Belshaw PJ, Smith LM. Ionizable isotopic labeling reagent for relative quantification of amine metabolites by mass spectrometry. Analytical Chemistry. 78: 6398-403. PMID 16970314 DOI: 10.1021/ac0607008  1
2006 Peelen D, Kodoyianni V, Lee J, Zheng T, Shortreed MR, Smith LM. Specific capture of mammalian cells by cell surface receptor binding to ligand immobilized on gold thin films. Journal of Proteome Research. 5: 1580-5. PMID 16823965 DOI: 10.1021/pr050467e  1
2006 Lamos SM, Krusemark CJ, McGee CJ, Scalf M, Smith LM, Belshaw PJ. Mixed isotope photoaffinity reagents for identification of small-molecule targets by mass spectrometry. Angewandte Chemie (International Ed. in English). 45: 4329-33. PMID 16733838 DOI: 10.1002/anie.200600743  1
2006 Smith LM. Nanostructures: the manifold faces of DNA. Nature. 440: 283-4. PMID 16541053 DOI: 10.1038/440283a  1
2006 Nie B, Shortreed MR, Smith LM. Quantitative detection of individual cleaved DNA molecules on surfaces using gold nanoparticles and scanning electron microscope imaging. Analytical Chemistry. 78: 1528-34. PMID 16503604 DOI: 10.1021/ac052067g  1
2006 Zhang X, Scalf M, Berggren TW, Westphall MS, Smith LM. Identification of mammalian cell lines using MALDI-TOF and LC-ESI-MS/MS mass spectrometry. Journal of the American Society For Mass Spectrometry. 17: 490-9. PMID 16488154 DOI: 10.1016/j.jasms.2005.12.007  0.72
2005 Shortreed MR, Chang SB, Hong D, Phillips M, Campion B, Tulpan DC, Andronescu M, Condon A, Hoos HH, Smith LM. A thermodynamic approach to designing structure-free combinatorial DNA word sets. Nucleic Acids Research. 33: 4965-77. PMID 16284197 DOI: 10.1093/nar/gki812  1
2005 Nie B, Shortreed MR, Smith LM. Scoring single-nucleotide polymorphisms at the single-molecule level by counting individual DNA cleavage events on surfaces. Analytical Chemistry. 77: 6594-600. PMID 16223245 DOI: 10.1021/ac051025p  1
2005 Frey BL, Lin Y, Westphall MS, Smith LM. Controlling gas-phase reactions for efficient charge reduction electrospray mass spectrometry of intact proteins. Journal of the American Society For Mass Spectrometry. 16: 1876-87. PMID 16198118 DOI: 10.1016/j.jasms.2005.07.019  0.8
2005 Murray JK, Farooqi B, Sadowsky JD, Scalf M, Freund WA, Smith LM, Chen J, Gellman SH. Efficient synthesis of a beta-peptide combinatorial library with microwave irradiation. Journal of the American Chemical Society. 127: 13271-80. PMID 16173757 DOI: 10.1021/ja052733v  1
2005 Tulpan D, Andronescu M, Chang SB, Shortreed MR, Condon A, Hoos HH, Smith LM. Thermodynamically based DNA strand design. Nucleic Acids Research. 33: 4951-64. PMID 16145053 DOI: 10.1093/nar/gki773  0.88
2005 Zheng T, Peelen D, Smith LM. Lectin arrays for profiling cell surface carbohydrate expression. Journal of the American Chemical Society. 127: 9982-3. PMID 16011345 DOI: 10.1021/ja0505550  1
2005 Book AJ, Yang P, Scalf M, Smith LM, Vierstra RD. Tripeptidyl peptidase II. An oligomeric protease complex from Arabidopsis. Plant Physiology. 138: 1046-57. PMID 15908606 DOI: 10.1104/pp.104.057406  1
2005 Chen Y, Shortreed MR, Olivier M, Smith LM. Parallel single nucleotide polymorphism genotyping by surface invasive cleavage with universal detection. Analytical Chemistry. 77: 2400-5. PMID 15828773 DOI: 10.1021/ac0483825  0.88
2005 Rabaglia ME, Gray-Keller MP, Frey BL, Shortreed MR, Smith LM, Attie AD. Alpha-Ketoisocaproate-induced hypersecretion of insulin by islets from diabetes-susceptible mice. American Journal of Physiology. Endocrinology and Metabolism. 289: E218-24. PMID 15741243 DOI: 10.1152/ajpendo.00573.2004  0.88
2005 Peelen D, Smith LM. Immobilization of amine-modified oligonucleotides on aldehyde-terminated alkanethiol monolayers on gold. Langmuir : the Acs Journal of Surfaces and Colloids. 21: 266-71. PMID 15620313 DOI: 10.1021/la048166r  0.92
2004 Su X, Smith LM. Demonstration of a universal surface DNA computer. Nucleic Acids Research. 32: 3115-23. PMID 15181177 DOI: 10.1093/nar/gkh635  0.92
2004 Lu M, Knickerbocker T, Cai W, Yang W, Hamers RJ, Smith LM. Invasive cleavage reactions on DNA-modified diamond surfaces. Biopolymers. 73: 606-13. PMID 15048784 DOI: 10.1002/bip.20007  1
2004 Chen Y, Shortreed MR, Peelen D, Lu M, Smith LM. Surface amplification of invasive cleavage products. Journal of the American Chemical Society. 126: 3016-7. PMID 15012108 DOI: 10.1021/ja039355j  1
2003 Chen X, Westphall MS, Smith LM. Mass spectrometric analysis of DNA mixtures: instrumental effects responsible for decreased sensitivity with increasing mass. Analytical Chemistry. 75: 5944-52. PMID 14588036 DOI: 10.1021/ac030127h  0.72
2002 Yang W, Auciello O, Butler JE, Cai W, Carlisle JA, Gerbi JE, Gruen DM, Knickerbocker T, Lasseter TL, Russell JN, Smith LM, Hamers RJ. DNA-modified nanocrystalline diamond thin-films as stable, biologically active substrates. Nature Materials. 1: 253-7. PMID 12618788 DOI: 10.1038/nmat779  1
2002 Berggren WT, Westphall MS, Smith LM. Single-pulse nanoelectrospray ionization. Analytical Chemistry. 74: 3443-8. PMID 12139052 DOI: 10.1021/ac010975h  1
2002 Lu M, Hall JG, Shortreed MR, Wang L, Berggren WT, Stevens PW, Kelso DM, Lyamichev V, Neri B, Skinner JL, Smith LM. Structure-specific DNA cleavage on surfaces. Journal of the American Chemical Society. 124: 7924-31. PMID 12095336 DOI: 10.1021/ja012082c  1
2002 Berggren WT, Takova T, Olson MC, Eis PS, Kwiatkowski RW, Smith LM. Multiplexed gene expression analysis using the invader RNA assay with MALDI-TOF mass spectrometry detection. Analytical Chemistry. 74: 1745-50. PMID 11985304 DOI: 10.1021/ac011167t  1
2002 Lu M, Shortreed MR, Hall JG, Wang L, Berggren T, Stevens PW, Kelso DM, Lyamichev V, Neri B, Smith LM. A surface invasive cleavage assay for highly parallel SNP analysis. Human Mutation. 19: 416-22. PMID 11933196 DOI: 10.1002/humu.10071  1
2001 Wang L, Hall JG, Lu M, Liu Q, Smith LM. A DNA computing readout operation based on structure-specific cleavage. Nature Biotechnology. 19: 1053-9. PMID 11689851 DOI: 10.1038/nbt1101-1053  1
2001 Wilkins Stevens P, Hall JG, Lyamichev V, Neri BP, Lu M, Wang L, Smith LM, Kelso DM. Analysis of single nucleotide polymorphisms with solid phase invasive cleavage reactions. Nucleic Acids Research. 29: E77. PMID 11504885  1
2001 Ebeling DD, Westphall MS, Scalf M, Smith LM. A cylindrical capacitor ionization source: droplet generation and controlled charge reduction for mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 15: 401-5. PMID 11291117 DOI: 10.1002/rcm.245  1
2000 Ebeling DD, Westphall MS, Scalf M, Smith LM. Corona discharge in charge reduction electrospray mass spectrometry. Analytical Chemistry. 72: 5158-61. PMID 11080858 DOI: 10.1021/ac000559h  1
2000 Griffin TJ, Smith LM. Genetic identification by mass spectrometric analysis of single-nucleotide polymorphisms: ternary encoding of genotypes. Analytical Chemistry. 72: 3298-302. PMID 10939403 DOI: 10.1021/ac991390e  1
2000 Fei Z, Smith LM. Analysis of single nucleotide polymorphisms by primer extension and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry Rapid Communications in Mass Spectrometry. 14: 950-959. PMID 10844731 DOI: 10.1002/(SICI)1097-0231(20000615)14:11<950::AID-RCM971>3.0.CO;2-3  1
2000 Chen X, Smith LM, Bradbury EM. Site-specific mass tagging with stable isotopes in proteins for accurate and efficient protein identification Analytical Chemistry. 72: 1134-1143. PMID 10740850 DOI: 10.1021/ac9911600  1
2000 Griffin TJ, Smith LM. Single-nucleotide polymorphism analysis by MALDI-TOF mass spectrometry. Trends in Biotechnology. 18: 77-84. PMID 10652512 DOI: 10.1016/S0167-7799(99)01401-8  1
2000 Liu Q, Wang L, Frutos AG, Condon AE, Corn RM, Smith LM. DNA computing on surfaces. Nature. 403: 175-9. PMID 10646598 DOI: 10.1038/35003155  1
1999 Wang L, Liu Q, Frutos AG, Gillmor SD, Thiel AJ, Strother TC, Condon AE, Corn RM, Lagally MG, Smith LM. Surface-based DNA computing operations: DESTROY and READOUT. Bio Systems. 52: 189-91. PMID 10636044 DOI: 10.1016/S0303-2647(99)00046-5  1
1999 Liu Q, Frutos AG, Wang L, Thiel AJ, Gillmor SD, Strother CT, Condon AE, Corn RM, Lagally MG, Smith LM. Progress toward demonstration of a surface based DNA computation: a one word approach to solve a model satisfiability problem. Bio Systems. 52: 25-33. PMID 10636027 DOI: 10.1016/S0303-2647(99)00029-5  1
1999 Chen X, Fei Z, Smith LM, Bradbury EM, Majidi V. Stable-isotope-assisted MALDI-TOF mass spectrometry for accurate determination of nucleotide compositions of PCR products Analytical Chemistry. 71: 3118-3125. PMID 10450157 DOI: 10.1021/ac9812680  1
1999 Griffin TJ, Hall JG, Prudent JR, Smith LM. Direct genetic analysis by matrix-assisted laser desorption/ionization mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 96: 6301-6. PMID 10339582 DOI: 10.1073/pnas.96.11.6301  1
1998 Liu Q, Frutos AG, Thiel AJ, Corn RM, Smith LM. DNA computing on surfaces: encoding information at the single base level. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 5: 269-78. PMID 9672832  1
1998 Smith LM, Corn RM, Condon AE, Lagally MG, Frutos AG, Liu Q, Thiel AJ. A surface-based approach to DNA computation. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 5: 255-67. PMID 9672831  1
1998 Griffin TJ, Smith LM. An approach to predicting the stabilities of peptide nucleic acid:DNA duplexes. Analytical Biochemistry. 260: 56-63. PMID 9648653 DOI: 10.1006/abio.1998.2686  1
1998 Giddings MC, Severin J, Westphall M, Wu J, Smith LM. A software system for data analysis in automated DNA sequencing. Genome Research. 8: 644-65. PMID 9647639  1
1998 Fei Z, Ono T, Smith LM. MALDI-TOF mass spectrometric typing of single nucleotide polymorphisms with mass-tagged ddNTPs Nucleic Acids Research. 26: 2827-2828. PMID 9592175 DOI: 10.1093/nar/26.11.2827  1
1998 Frutos AG, Smith LM, Corn RM. Enzymatic ligation reactions of DNA 'words' on surfaces for DNA computing Journal of the American Chemical Society. 120: 10277-10282. DOI: 10.1021/ja982030w  1
1997 Frutos AG, Liu Q, Thiel AJ, Sanner AM, Condon AE, Smith LM, Corn RM. Demonstration of a word design strategy for DNA computing on surfaces. Nucleic Acids Research. 25: 4748-57. PMID 9441280  1
1997 Griffin TJ, Tang W, Smith LM. Genetic analysis by peptide nucleic acid affinity MALDI-TOF mass spectrometry. Nature Biotechnology. 15: 1368-72. PMID 9415888 DOI: 10.1038/nbt1297-1368  1
1997 Guilfoyle RA, Leeck CL, Kroening KD, Smith LM, Guo Z. Ligation-mediated PCR amplification of specific fragments from a Class-II restriction endonuclease total digest Nucleic Acids Research. 25: 1854-1858. PMID 9108171 DOI: 10.1093/nar/25.9.1854  1
1997 Mouradian S, Skogen JW, Dorman FD, Zarrin F, Kaufman SL, Smith LM. DNA Analysis Using an Electrospray Scanning Mobility Particle Sizer Analytical Chemistry. 69: 919-925. PMID 9068276  1
1997 Tang W, Zhu L, Smith LM. Controlling DNA fragmentation in MALDI-MS by chemical modification Analytical Chemistry. 69: 302-312. DOI: 10.1021/ac960865o  1
1997 Tang W, Nelson CM, Zhu L, Smith LM. Positive ion formation in the ultraviolet matrix-assisted laser desorption/ionization analysis of oligonucleotides by using 2,5- dihydroxybenzoic acid Journal of the American Society For Mass Spectrometry. 8: 218-224. DOI: 10.1016/S1044-0305(96)00237-1  1
1997 Smith LM. In situ surface plasmon resonance imaging detection of DNA hybridization to oligonucleotide arrays on gold surfaces Analytical Chemistry. 69: 4948-4956.  1
1997 Tang W, Krause J, Zhu L, Smith LM. Factors influencing oligonucleotide stability in matrix-assisted laser desorption/ionization (MALDI) mass spectroscopy International Journal of Mass Spectrometry and Ion Processes. 169: 301-311.  1
1997 Ji H, Smith LM. Rapid purification of circular DNA by triplex-mediated affinity capture Biotechnology Advances. 15: 667.  1
1997 Cai W, Condon AE, Corn RM, Glaser E, Fei Z, Frutos T, Guo Z, Lagally MG, Liu Q, Smith LM, Thiel A. Power of surface-based DNA computation Proceedings of Thr Annual International Conference On Computational Molecular Biology, Recomb. 67-74.  1
1996 Brow MA, Oldenburg MC, Lyamichev V, Heisler LM, Lyamicheva N, Hall JG, Eagan NJ, Olive DM, Smith LM, Fors L, Dahlberg JE. Differentiation of bacterial 16S rRNA genes and intergenic regions and Mycobacterium tuberculosis katG genes by structure-specific endonuclease cleavage. Journal of Clinical Microbiology. 34: 3129-37. PMID 8940459  1
1996 Mouradian S, Rank DR, Smith LM. Analyzing sequencing reactions from bacteriophage M13 by matrix-assisted laser desorption/ionization mass spectrometry Rapid Communications in Mass Spectrometry. 10: 1475-1478. PMID 8885418 DOI: 10.1002/(SICI)1097-0231(199609)10:12<1475::AID-RCM696>3.0.CO;2-C  1
1996 Ji H, Todd F, Smith LM, Guilfoyle RA. Rapid restriction mapping of cosmids by sequence-specific triple-helix- mediated affinity capture Genomics. 31: 185-192. PMID 8824800 DOI: 10.1006/geno.1996.0030  1
1996 Smith LM, Brumley RL, Buxton EC, Giddings M, Marchbanks M, Tong X. High-speed automated DNA sequencing in ultrathin slab gels. Methods in Enzymology. 271: 219-37. PMID 8782556  1
1996 Johnson AF, Wang R, Ji H, Chen D, Guilfoyle RA, Smith LM. Purifbation of single-stranded M13 DNA by cooperative triple-helix-mediated affinity capture Analytical Biochemistry. 234: 83-95. PMID 8742086 DOI: 10.1006/abio.1996.0053  1
1996 Chen D, Johnson AF, Severin JM, Rank DR, Smith LM, Guilfoyle RA. M13-102: a vector for facilitating construction and improving quality of M13 shotgun libraries. Gene. 172: 53-7. PMID 8654991 DOI: 10.1016/0378-1119(96)00048-0  1
1996 Mouradian S, Nelson CM, Smith LM. A self-assembled matrix monolayer for UV-MALDI mass spectrometry Journal of the American Chemical Society. 118: 8639-8645. DOI: 10.1021/ja953585j  1
1996 Buxton EC, Westphall M, Jacobson W, Tong X, Smith LM. Automation in large-scale DNA sequencing Laboratory Robotics and Automation. 8: 339-349.  1
1996 Nelson CM, Zhu L, Tang W, Smith LM, Crellin K, Berry J, Beauchamp JL. Fragmentation mechanisms of oligonucleotides in MALDI mass spectrometry Proceedings of Spie - the International Society For Optical Engineering. 2680: 247-255.  1
1995 Fitzgerald MC, Smith LM. Mass spectrometry of nucleic acids: the promise of matrix-assisted laser desorption-ionization (MALDI) mass spectrometry. Annual Review of Biophysics and Biomolecular Structure. 24: 117-40. PMID 7663111 DOI: 10.1146/annurev.bb.24.060195.001001  1
1995 Zhu L, Parr GR, Fitzgerald MC, Nelson CM, Smith LM. Oligodeoxynucleotide fragmentation in MALDI/TOF mass spectrometry using 355-nm radiation Journal of the American Chemical Society. 117: 6048-6056. DOI: 10.1021/ja00127a018  1
1995 Westphall MS, Brumley RL, Buxton EC, Smith LM. High-speed automated DNA sequencing utilizing from-the-side laser excitation Proceedings of Spie - the International Society For Optical Engineering. 2386: 45-54.  1
1995 Chen D, Peterson MD, Brumley RL, Giddings MC, Buxton EC, Westphall M, Smith L, Smith LM. Side excitation of fluorescence in ultrathin slab gel electrophoresis Analytical Chemistry. 67: 3405-3411.  1
1994 Guilfoyle RA, Smith LM. A direct selection strategy for shotgun cloning and sequencing in the bacteriophage M13 Nucleic Acids Research. 22: 100-107. PMID 8127645 DOI: 10.1093/nar/22.1.100  1
1994 Kolner DE, Guilfoyle RA, Smith LM. A high throughput system for the preparation of single stranded templates grown in microculture Mitochondrial Dna. 4: 253-257. PMID 7987011 DOI: 10.3109/10425179409020849  1
1994 Hou W, Smith LM. DNA sequencing with a hexamer string primer and dye-labeled terminators Analytical Biochemistry. 221: 136-141. PMID 7985784 DOI: 10.1006/abio.1994.1389  1
1994 Ji H, Smith LM, Guilfoyle RA. Rapid isolation of cosmid insert DNA by triple-helix-mediated affinity capture Genetic Analysis Techniques and Applications. 11: 43-47. PMID 7917500 DOI: 10.1016/1050-3862(94)90060-4  1
1994 Mouradian S, Brumley RL, Smith LM. Separating field strength, temperature, and pulsing effects in pulsed field electrophoresis Electrophoresis. 15: 1084-1090. PMID 7859712  1
1994 Guo Z, Guilfoyle RA, Thiel AJ, Wang R, Smith LM. Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports Nucleic Acids Research. 22: 5456-5465. PMID 7816638  1
1993 Ji H, Smith LM. Rapid purification of double-stranded DNA by triple-helix-mediated affinity capture Analytical Chemistry. 65: 1323-1328. PMID 8517544  1
1993 Luckey JA, Drossman H, Kostichka T, Smith LM. High-speed DNA sequencing by capillary gel electrophoresis Methods in Enzymology. 218: 154-172. PMID 8510530  1
1993 Smith LM. Automated DNA sequencing: a look into the future Cancer Detection and Prevention. 17: 283-288. PMID 8402713  1
1993 Luckey JA, Smith LM. A model for the mobility of single-stranded DNA in capillary gel electrophoresis Electrophoresis. 14: 492-501. PMID 8354234  1
1993 Fitzgerald MC, Parr GR, Smith LM. Basic matrices for the matrix-assisted laser desorption/ionization mass spectrometry of proteins and oligonucleotides. Analytical Chemistry. 65: 3204-11. PMID 8291672 DOI: 10.1021/ac00070a007  1
1993 Luckey JA, Smith LM. Optimization of electric field strength for DNA sequencing in capillary gel electrophoresis Analytical Chemistry. 65: 2841-2850. PMID 8250264  1
1993 Giddings MC, Brumley RL, Haker M, Smith LM. An adaptive, object oriented strategy for base calling in DNA sequence analysis Nucleic Acids Research. 21: 4530-4540. PMID 8233787  1
1993 Smith LM. The future of DNA sequencing Science. 262: 530-531. PMID 8211178  1
1993 Tong X, Smith LM. Solid phase purification in automated DNA sequencing Mitochondrial Dna. 4: 151-162. PMID 8161818 DOI: 10.3109/10425179309015628  1
1993 Smith LM. DNA electrophoresis Current Opinion in Biotechnology. 4: 37-40. PMID 7763391 DOI: 10.1016/0958-1669(93)90029-V  1
1993 Hou W, Smith LM. Fluorescence-based DNA sequencing with hexamer primers Nucleic Acids Research. 21: 4158. DOI: 10.1093/nar/21.17.4158  1
1993 Luckey JA, Norris TB, Smith LM. Analysis of resolution in DNA sequencing by capillary gel electrophoresis Journal of Physical Chemistry. 97: 3067-3075.  1
1993 Johnson AF, Struthers MD, Pierson KB, Mangel WF, Smith LM. Nonisotopic DNA detection system employing elastase and a fluorogenic rhodamine substrate Analytical Chemistry. 65: 2352-2359.  1
1992 Kolner DE, Mead DA, Smith LM. Ultrathin DNA sequencing gels using microtrough vertical electrophoresis plates Biotechniques. 13: 338-339. PMID 1389163  1
1992 Fitzgerald MC, Skowron P, Van Etten JL, Smith LM, Mead DA. Rapid shotgun cloning utilizing the two base recognition endonuclease CviJI. Nucleic Acids Research. 20: 3753-62. PMID 1322530  1
1992 Kostichka AJ, Marchbanks ML, Brumley RL, Drossman H, Smith LM. High speed automated dna sequencing in ultrathin slab gels Nature Biotechnology. 10: 78-81. DOI: 10.1038/nbt0192-78  1
1992 Tong X, Smith LM. Solid-phase method for the purification of DNA sequencing reactions Analytical Chemistry. 64: 2672-2677.  1
1991 Mead DA, McClary JA, Luckey JA, Kostichka AJ, Witney FR, Smith LM. Bst DNA polymerase permits rapid sequence analysis from nanogram amounts of template Biotechniques. 11: 76-78+80+82-84+86-87. PMID 1954022  1
1991 Brumley RL, Smith LM. Rapid DNA sequencing by horizontal ultrathin gel electrophoresis Nucleic Acids Research. 19: 4121-4126. PMID 1870968 DOI: 10.1093/nar/19.15.4121  1
1991 Mead DA, Pey NK, Herrnstadt C, Marcil RA, Smith LM. A universal method for the direct cloning of PCR amplified nucleic acid Nature Biotechnology. 9: 657-663. DOI: 10.1038/nbt0791-657  1
1990 D'Cunha J, Berson BJ, Brumley RL, Wagner PR, Smith LM. An automated instrument for the performance of enzymatic DNa sequencing reactions Biotechniques. 9: 80-90. PMID 2393577  1
1990 Luckey JA, Drossman H, Kostichka AJ, Mead DA, D'Cunha J, Norris TB, Smith LM. High speed DNA sequencing by capillary electrophoresis Nucleic Acids Research. 18: 4417-4421. PMID 2388826  1
1990 Drossman H, Luckey JA, Kostichka AJ, D'Cunha J, Smith LM. High-speed separations of DNA sequencing reactions by capillary electrophoresis Analytical Chemistry. 62: 900-903. PMID 2363514  1
1989 Smith LM. Automated DNA sequencing and the analysis of the human genome Genome. 31: 929-937. PMID 2698851  1
1988 Smith LM. Automated synthesis and sequence analysis of biological macromolecules Analytical Chemistry. 60: 381 A-390 A. PMID 3288001  1
1988 Smith LM. Automated DNA sequence using fluorescence detection . 410.  1
1988 Smith L. Product options increase in DNA sequencing arena Scientist. 2.  1
1987 Smith LM, Kaiser RJ, Sanders JZ, Hood LE. The synthesis and use of fluorescent oligonucleotides in DNA sequence analysis. Methods in Enzymology. 155: 260-301. PMID 3431463  1
1987 Hood LE, Hunkapiller MW, Smith LM. Automated DNA sequencing and analysis of the human genome. Genomics. 1: 201-12. PMID 3328736 DOI: 10.1016/0888-7543(87)90046-2  1
1986 Smith LM, Sanders JZ, Kaiser RJ, Hughes P, Dodd C, Connell CR, Heiner C, Kent SB, Hood LE. Fluorescence detection in automated DNA sequence analysis. Nature. 321: 674-9. PMID 3713851 DOI: 10.1038/321674a0  1
1985 Smith LM, Fung S, Hunkapiller MW, Hunkapiller TJ, Hood LE. The synthesis of oligonucleotides containing an aliphatic amino group at the 5' terminus: synthesis of fluorescent DNA primers for use in DNA sequence analysis. Nucleic Acids Research. 13: 2399-412. PMID 4000959 DOI: 10.1093/nar/13.7.2399  1
1985 Smith LM, Fung S, Hunkapiller MW, Hunkapiller TJ, Hood LE. The synthesis of oligonucleotides containing an aliphatic amino group at the 5′ terminus: Synthesis of fluorescent DNA primers for use in DNA sequence analysis Nucleic Acids Research. 13: 2399-2412. DOI: 10.1093/nar/13.7.2399  1
1984 Mehdi SQ, Recktenwald DJ, Smith LM, Li GC, Armour EP, Hahn GM. Effect of hyperthermia on murine cell surface histocompatibility antigens Cancer Research. 44: 3394-3397. PMID 6378367  1
1982 Hafeman DG, Smith LM, Fearon DT, McConnell HM. Lipid monolayer-coated solid surfaces do not perturb the lateral motion and distribution of C3b receptors on neutrophils. The Journal of Cell Biology. 94: 224-7. PMID 6749868  1
1982 Smith LM, Petty HR, Parham P, McConnell HM. Cell surface properties of HLA antigens on Epstein-Barr virus-transformed cell lines. Proceedings of the National Academy of Sciences of the United States of America. 79: 608-12. PMID 6281776  1
1982 Cartwright GS, Smith LM, Heinzelmann EW, Ruebush MJ, Parce JW, McConnell HM. H-2Kk and vesicular stomatitis virus G proteins are not extensively associated in reconstituted membranes recognized by T cells. Proceedings of the National Academy of Sciences of the United States of America. 79: 1506-10. PMID 6280187  1
1982 Howard FD, Ledbetter JA, Carter DP, Smith LM, McConnell HM. The lateral mobility and surface distribution of Lyt-1, Lyt-2 and Lyt-3 on mouse thymocytes. Molecular Immunology. 19: 1481-9. PMID 6191201 DOI: 10.1016/0161-5890(82)90194-8  1
1981 Smith LM, Weis RM, McConnell HM. Measurement of rotational motion in membranes using fluorescence recovery after photobleaching. Biophysical Journal. 36: 73-91. PMID 7284556 DOI: 10.1016/S0006-3495(81)84717-0  1
1981 Smith LM, McConnell HM, Smith Baron A, Parce JW. Pattern photobleaching of fluorescent lipid vesicles using polarized laser light. Biophysical Journal. 33: 139-46. PMID 7272436 DOI: 10.1016/S0006-3495(81)84877-1  1
1980 Smith LM, Rubenstein JL, Parce JW, McConnell HM. Lateral diffusion of M-13 coat protein in mixtures of phosphatidylcholine and cholesterol. Biochemistry. 19: 5907-11. PMID 7459346  1
1980 Petty HR, Smith LM, Fearon DT, McConnell HM. Lateral distribution and diffusion of the C3b receptor of complement, HLA antigens, and lipid probes in peripheral blood leukocytes. Proceedings of the National Academy of Sciences of the United States of America. 77: 6587-91. PMID 6935669  1
1979 Smith LM, Smith BA, McConnell HM. Lateral diffusion of M-13 coat protein in model membranes. Biochemistry. 18: 2256-9. PMID 444454  1
1979 Smith LM, Parce JW, Smith BA, McConnell HM. Antibodies bound to lipid haptens in model membranes diffuse as rapidly as the lipids themselves. Proceedings of the National Academy of Sciences of the United States of America. 76: 4177-9. PMID 291959  1
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