Yane-Shih Wang - Related publications

2007-2012 Chemistry Texas A & M University, College Station, TX, United States 
 2012-2015 Molecular Biophysics and Biochemistry Yale University, New Haven, CT 
 2015- Institute of Biological Chemistry Academia Sinica, Moni Vatopediou, Taipei City, Taiwan 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Ding W, Zhao H, Chen Y, Zhang B, Yang Y, Zang J, Wu J, Lin S. Chimeric design of pyrrolysyl-tRNA synthetase/tRNA pairs and canonical synthetase/tRNA pairs for genetic code expansion. Nature Communications. 11: 3154. PMID 32572025 DOI: 10.1038/s41467-020-16898-y   
2020 Dunkelmann DL, Willis JCW, Beattie AT, Chin JW. Engineered triply orthogonal pyrrolysyl-tRNA synthetase/tRNA pairs enable the genetic encoding of three distinct non-canonical amino acids. Nature Chemistry. PMID 32472101 DOI: 10.1038/s41557-020-0472-x   
2020 Zhang L, Wang Y, Dai H, Zhou J. Structural and functional studies revealed key mechanisms underlying elongation step of protein translation. Acta Biochimica Et Biophysica Sinica. PMID 32400848 DOI: 10.1093/abbs/gmaa046   
2020 Zeng T, Hua Y, Sun C, Zhang Y, Yang F, Yang M, Yang Y, Li J, Huang X, Wu H, Fu Z, Li W, Yin Y. Relationship between tRNA-derived fragments and human cancers. International Journal of Cancer. PMID 32427348 DOI: 10.1002/ijc.33107   
2020 Kong J, Kim S. Cell-based analysis of pairwise interactions between the components of the multi-tRNA synthetase complex. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. PMID 32539228 DOI: 10.1096/fj.202000418R   
2020 Vilardo E, Amman F, Toth U, Kotter A, Helm M, Rossmanith W. Functional characterization of the human tRNA methyltransferases TRMT10A and TRMT10B. Nucleic Acids Research. PMID 32392304 DOI: 10.1093/nar/gkaa353   
2020 Barozai MYK, Chaudhuri M. Role of the translocase of the mitochondrial inner membrane in the import of tRNAs into mitochondria in Trypanosoma brucei. Gene. 748: 144705. PMID 32339625 DOI: 10.1016/j.gene.2020.144705   
2020 Yakobov N, Fischer F, Mahmoudi N, Saga Y, Grube CD, Roy H, Senger B, Grob G, Tatematsu S, Yokokawa D, Mouyna I, Latgé JP, Nakajima H, Kushiro T, Becker HD. RNA-dependent sterol aspartylation in fungi. Proceedings of the National Academy of Sciences of the United States of America. PMID 32541034 DOI: 10.1073/pnas.2003266117   
2020 Fagbemi A, Newman WG, Tangye SG, Hughes SM, Cheesman E, Arkwright PD. Refractory very early-onset inflammatory bowel disease associated with cytosolic isoleucyl-tRNA synthetase deficiency: A case report. World Journal of Gastroenterology. 26: 1841-1846. PMID 32351297 DOI: 10.3748/wjg.v26.i15.1841   
2020 Kuncha SK, Venkadasamy VL, Amudhan G, Dahate P, Kola SR, Pottabathini S, Kruparani SP, Shekar PC, Sankaranarayanan R. Genomic innovation of ATD alleviates mistranslation associated with multicellularity in Animalia. Elife. 9. PMID 32463355 DOI: 10.7554/eLife.58118   
2020 Zhang W, Xu R, Matuszek Ż, Cai Z, Pan T. Detection and quantification of glycosylated queuosine modified tRNAs by acid denaturing and APB gels. Rna (New York, N.Y.). PMID 32439717 DOI: 10.1261/rna.075556.120   
2020 Kulandaisamy R, Kushwaha T, Kumar V, De S, Kumar S, Upadhyay SK, Kumar M, Inampudi KK. Characterization of active/binding site residues of peptidyl-tRNA hydrolase using biophysical and computational studies. International Journal of Biological Macromolecules. PMID 32445815 DOI: 10.1016/j.ijbiomac.2020.05.133   
2020 Lyu X, Yang Q, Li L, Dang Y, Zhou Z, Chen S, Liu Y. Adaptation of codon usage to tRNA I34 modification controls translation kinetics and proteome landscape. Plos Genetics. 16: e1008836. PMID 32479508 DOI: 10.1371/journal.pgen.1008836   
2020 Scopino K, Williams E, Elsayed A, Barr WA, Krizanc D, Thayer KM, Weir MP. A Ribosome Interaction Surface Sensitive to mRNA GCN Periodicity. Biomolecules. 10. PMID 32503152 DOI: 10.3390/biom10060849   
2020 Scopino K, Williams E, Elsayed A, Barr WA, Krizanc D, Thayer KM, Weir MP. A Ribosome Interaction Surface Sensitive to mRNA GCN Periodicity. Biomolecules. 10. PMID 32503152 DOI: 10.3390/biom10060849   
2020 Zheng H, Lin S, Chen PR. Genetically encoded protein labeling and crosslinking in living Pseudomonas aeruginosa. Bioorganic & Medicinal Chemistry. 28: 115545. PMID 32503693 DOI: 10.1016/j.bmc.2020.115545   
2020 Chen M, Kuhle B, Diedrich J, Liu Z, Moresco JJ, Yates Iii JR, Pan T, Yang XL. Cross-editing by a tRNA synthetase allows vertebrates to abundantly express mischargeable tRNA without causing mistranslation. Nucleic Acids Research. PMID 32484512 DOI: 10.1093/nar/gkaa469   
2020 Zhang N, Shi S, Wang X, Ni W, Yuan X, Duan J, Jia TZ, Yoo B, Ziegler A, Russo JJ, Li W, Zhang S. Direct sequencing of tRNA by 2D-HELS-AA MS Seq reveals its different isoforms and dynamic base modifications. Acs Chemical Biology. PMID 32364699 DOI: 10.1021/acschembio.0c00119   
2020 Aleksashin NA, Szal T, d'Aquino AE, Jewett MC, Vázquez-Laslop N, Mankin AS. A fully orthogonal system for protein synthesis in bacterial cells. Nature Communications. 11: 1858. PMID 32313034 DOI: 10.1038/s41467-020-15756-1   
2020 Kimura S, Dedon PC, Waldor MK. Comparative tRNA sequencing and RNA mass spectrometry for surveying tRNA modifications. Nature Chemical Biology. PMID 32514182 DOI: 10.1038/s41589-020-0558-1   
2020 Zhu Y, Berg MD, Yang P, Loll-Krippleber R, Brown GW, Brandl CJ. Mistranslating tRNA identifies a deleterious S213P mutation in the Saccharomyces cerevisiae eco1-1 allele. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. PMID 32476470 DOI: 10.1139/bcb-2020-0151   
2020 Wu TH, Peng J, Zhang CL, Wu LW, Yang LF, Peng P, Pang N, Yin F, He F. [Mutations in aminoacyl-tRNA synthetase genes: an analysis of 10 cases]. Zhongguo Dang Dai Er Ke Za Zhi = Chinese Journal of Contemporary Pediatrics. 22: 595-601. PMID 32571458 DOI: 10.7499/j.issn.1008-8830.1912040   
2020 Beyer J, Hosseinzadeh P, Gottfried-Lee I, Van Fossen EM, Zhu P, Bednar RM, Karplus PA, Mehl RA, Cooley RB. Overcoming near-cognate suppression in a Release Factor 1-deficient host with an improved nitro-tyrosine tRNA synthetase. Journal of Molecular Biology. PMID 32569745 DOI: 10.1016/j.jmb.2020.06.014   
2020 Rashad S, Han X, Sato K, Mishima E, Abe T, Tominaga T, Niizuma K. The stress specific impact of ALKBH1 on tRNA cleavage and tiRNA generation. Rna Biology. PMID 32521209 DOI: 10.1080/15476286.2020.1779492   
2020 Han P, Shichino Y, Schneider-Poetsch T, Mito M, Hashimoto S, Udagawa T, Kohno K, Yoshida M, Mishima Y, Inada T, Iwasaki S. Genome-wide Survey of Ribosome Collision. Cell Reports. 31: 107610. PMID 32375038 DOI: 10.1016/j.celrep.2020.107610   
2020 Hayne CK, Schmidt CA, Haque MI, Matera AG, Stanley RE. Reconstitution of the human tRNA splicing endonuclease complex: insight into the regulation of pre-tRNA cleavage. Nucleic Acids Research. PMID 32476018 DOI: 10.1093/nar/gkaa438   
2020 Lentini JM, Alsaif HS, Faqeih E, Alkuraya FS, Fu D. DALRD3 encodes a protein mutated in epileptic encephalopathy that targets arginine tRNAs for 3-methylcytosine modification. Nature Communications. 11: 2510. PMID 32427860 DOI: 10.1038/s41467-020-16321-6   
2020 Wang T, Liang C, Zheng M, Liu L, An Y, Xu H, Xiao S, Nie L. Ribosome Hibernation as a Stress Response of Bacteria. Protein and Peptide Letters. PMID 32520673 DOI: 10.2174/0929866527666200610142118   
2020 Miller JB, McKinnon LM, Whiting MF, Kauwe JSK, Ridge PG. Codon Pairs are Phylogenetically Conserved: A comprehensive analysis of codon pairing conservation across the Tree of Life. Plos One. 15: e0232260. PMID 32401752 DOI: 10.1371/journal.pone.0232260   
2020 Nunes A, Ribeiro DR, Marques M, Santos MAS, Ribeiro D, Soares AR. Emerging Roles of tRNAs in RNA Virus Infections. Trends in Biochemical Sciences. PMID 32505636 DOI: 10.1016/j.tibs.2020.05.007   
2020 Xu X, Zhong H, Liu W, Tao Y. Extension of Genetic Marker List Using Unnatural Amino Acid System: An Efficient Genomic Modification Strategy in . Frontiers in Bioengineering and Biotechnology. 8: 145. PMID 32411679 DOI: 10.3389/fbioe.2020.00145   
2020 Bowman JC, Petrov AS, Frenkel-Pinter M, Penev PI, Williams LD. Root of the Tree: The Significance, Evolution, and Origins of the Ribosome. Chemical Reviews. PMID 32374986 DOI: 10.1021/acs.chemrev.9b00742   
2020 DiGiuseppe S, Rollins MG, Astar H, Khalatyan N, Savas JN, Walsh D. Proteomic and mechanistic dissection of the poxvirus-customized ribosome. Journal of Cell Science. PMID 32467327 DOI: 10.1242/jcs.246603   
2020 Bao C, Loerch S, Ling C, Korostelev AA, Grigorieff N, Ermolenko DN. mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding. Elife. 9. PMID 32427100 DOI: 10.7554/eLife.55799   
2020 He Q, Yang L, Gao K, Ding P, Chen Q, Xiong J, Yang W, Song Y, Wang L, Wang Y, Ling L, Wu W, Yan J, Zou P, Chen Y, et al. FTSJ1 regulates tRNA 2'-O-methyladenosine modification and suppresses the malignancy of NSCLC via inhibiting DRAM1 expression. Cell Death & Disease. 11: 348. PMID 32393790 DOI: 10.1038/s41419-020-2525-x   
2020 Avcilar-Kucukgoze I, Gamper H, Polte C, Ignatova Z, Kraetzner R, Shtutman M, Hou YM, Dong DW, Kashina A. tRNA-Derived Fragments Can Serve as Arginine Donors for Protein Arginylation. Cell Chemical Biology. PMID 32553119 DOI: 10.1016/j.chembiol.2020.05.013   
2020 Demongeot J, Seligmann H. Comparisons between small ribosomal RNA and theoretical minimal RNA ring secondary structures confirm phylogenetic and structural accretion histories. Scientific Reports. 10: 7693. PMID 32376895 DOI: 10.1038/s41598-020-64627-8   
2020 Li J, Wang YN, Xu BS, Liu YP, Zhou M, Long T, Li H, Dong H, Nie Y, Chen PR, Wang ED, Liu RJ. Intellectual disability-associated gene ftsj1 is responsible for 2'-O-methylation of specific tRNAs. Embo Reports. e50095. PMID 32558197 DOI: 10.15252/embr.202050095   
2020 Yang S, Qu G, Fu B, Yang F, Zeng W, Cai Y, Ye T, Yang Y, Deng X, Xiang W, Peng D, Zhou B. The function of KptA/Tpt1 gene - a minor review. Functional Plant Biology : Fpb. PMID 32438974 DOI: 10.1071/FP19159   
2020 Hu L, Zhang M, Sun Y, Bu Y. Characterization and phylogenetic analysis of the first complete mitochondrial genome of Cylicocyclus radiatus. Veterinary Parasitology. 281: 109097. PMID 32438201 DOI: 10.1016/j.vetpar.2020.109097   
2020 Xu H, Chen W, Zheng F, Tang D, Dai W, Huang S, Zhang C, Zeng J, Wang G, Dai Y. The potential role of tRNAs and small RNAs derived from tRNAs in the occurrence and development of systemic lupus erythematosus. Biochemical and Biophysical Research Communications. PMID 32423797 DOI: 10.1016/j.bbrc.2020.04.114   
2020 Rose S, Auxilien S, Havelund JF, Kirpekar F, Huber H, Grosjean H, Douthwaite S. The hyperthermophilic partners Nanoarchaeum and Ignicoccus stabilize their tRNA T-loops via different but structurally equivalent modifications. Nucleic Acids Research. PMID 32459340 DOI: 10.1093/nar/gkaa411   
2020 Swinehart WE, Deutsch CW, Sarachan KL, Luthra A, Bacusmo JM, de Crécy-Lagard V, Swairjo MA, Agris PF, Iwata-Reuyl D. Specificity in the Biosynthesis of the Universal tRNA Nucleoside N6-Threonylcarbamoyl Adenosine (t6A) - TsaD is the Gatekeeper. Rna (New York, N.Y.). PMID 32385138 DOI: 10.1261/rna.075747.120   
2020 Sharifi S, Costa HFRD, Bierhoff H. The circuitry between ribosome biogenesis and translation in stem cell function and ageing. Mechanisms of Ageing and Development. 111282. PMID 32531294 DOI: 10.1016/j.mad.2020.111282   
2020 Gelsinger DR, Dallon E, Reddy R, Mohammad F, Buskirk AR, DiRuggiero J. Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution. Nucleic Acids Research. PMID 32382758 DOI: 10.1093/nar/gkaa304   
2020 Jiang HK, Wang YH, Weng JH, Kurkute P, Li CL, Lee MN, Chen PJ, Tseng HW, Tsai MD, Wang YS. Probing the active site of deubiquitinase USP30 with non-canonical tryptophan analogues. Biochemistry. PMID 32484330 DOI: 10.1021/acs.biochem.0c00307   
2020 Lu C, Huang X, Deng J. The challenge of Coccidae (Hemiptera: Coccoidea) mitochondrial genomes: The case of Saissetia coffeae with novel truncated tRNAs and gene rearrangements. International Journal of Biological Macromolecules. PMID 32387610 DOI: 10.1016/j.ijbiomac.2020.04.257   
2020 Killeavy EE, Jogl G, Gregory ST. Tiamulin-Resistant Mutants of the Thermophilic Bacterium . Antibiotics (Basel, Switzerland). 9. PMID 32526926 DOI: 10.3390/antibiotics9060313   
2020 Grenga L, Little RH, Chandra G, Woodcock SD, Saalbach G, Morris RJ, Malone JG. Control of mRNA translation by dynamic ribosome modification. Plos Genetics. 16: e1008837. PMID 32584816 DOI: 10.1371/journal.pgen.1008837   
2020 Juszkiewicz S, Speldewinde SH, Wan L, Svejstrup JQ, Hegde RS. The ASC-1 Complex Disassembles Collided Ribosomes. Molecular Cell. PMID 32579943 DOI: 10.1016/j.molcel.2020.06.006