Stephen Moose - Publications

Affiliations: 
University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
Molecular Biology, Plant Culture Agriculture, Plant Physiology

3/53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Cheng CY, Li Y, Varala K, Bubert J, Huang J, Kim GJ, Halim J, Arp J, Shih HS, Levinson G, Park SH, Cho HY, Moose SP, Coruzzi GM. Evolutionarily informed machine learning enhances the power of predictive gene-to-phenotype relationships. Nature Communications. 12: 5627. PMID 34561450 DOI: 10.1038/s41467-021-25893-w  0.332
2019 Baek YS, Goodrich LV, Brown PJ, James BT, Moose SP, Lambert KN, Riechers DE. Transcriptome Profiling and Genome-Wide Association Studies Reveal and Other Defense Genes Involved in Multiple Signaling Pathways Induced by Herbicide Safener in Grain Sorghum. Frontiers in Plant Science. 10: 192. PMID 30906302 DOI: 10.3389/fpls.2019.00192  0.309
1997 Moose SP, Sisco PH. Glossy15, an APETALA2-like gene from maize that regulates leaf epidermal cell identity. Genes & Development. 10: 3018-27. PMID 8957002 DOI: 10.1101/gad.10.23.3018  0.333
Low-probability matches (unlikely to be authored by this person)
2013 Barling A, Swaminathan K, Mitros T, James BT, Morris J, Ngamboma O, Hall MC, Kirkpatrick J, Alabady M, Spence AK, Hudson ME, Rokhsar DS, Moose SP. A detailed gene expression study of the Miscanthus genus reveals changes in the transcriptome associated with the rejuvenation of spring rhizomes. Bmc Genomics. 14: 864. PMID 24320546 DOI: 10.1186/1471-2164-14-864  0.283
2009 Gray J, Bevan M, Brutnell T, Buell CR, Cone K, Hake S, Jackson D, Kellogg E, Lawrence C, McCouch S, Mockler T, Moose S, Paterson A, Peterson T, Rokshar D, et al. A recommendation for naming transcription factor proteins in the grasses. Plant Physiology. 149: 4-6. PMID 19126689 DOI: 10.1104/Pp.108.128504  0.272
2020 Jarquin D, de Leon N, Romay C, Bohn M, Buckler ES, Ciampitti I, Edwards J, Ertl D, Flint-Garcia S, Gore MA, Graham C, Hirsch CN, Holland JB, Hooker D, Kaeppler SM, ... ... Moose SP, et al. Utility of Climatic Information via Combining Ability Models to Improve Genomic Prediction for Yield Within the Genomes to Fields Maize Project. Frontiers in Genetics. 11: 592769. PMID 33763106 DOI: 10.3389/fgene.2020.592769  0.271
2019 Zhang J, Fengler KA, Van Hemert JL, Gupta R, Mongar N, Sun J, Allen WB, Wang Y, Weers B, Mo H, Lafitte R, Hou Z, Bryant A, Ibraheem F, Arp J, ... ... Moose SP, et al. Identification and characterization of a novel stay-green QTL that increases yield in maize. Plant Biotechnology Journal. PMID 31033139 DOI: 10.1111/pbi.13139  0.269
2003 Guo H, Moose SP. Conserved noncoding sequences among cultivated cereal genomes identify candidate regulatory sequence elements and patterns of promoter evolution. The Plant Cell. 15: 1143-58. PMID 12724540 DOI: 10.1105/TPC.010181  0.266
2020 Mitros T, Session AM, James BT, Wu GA, Belaffif MB, Clark LV, Shu S, Dong H, Barling A, Holmes JR, Mattick JE, Bredeson JV, Liu S, Farrar K, Głowacka K, ... ... Moose SP, et al. Genome biology of the paleotetraploid perennial biomass crop Miscanthus. Nature Communications. 11: 5442. PMID 33116128 DOI: 10.1038/s41467-020-18923-6  0.259
2022 Trieu A, Belaffif MB, Hirannaiah P, Manjunatha S, Wood R, Bathula Y, Billingsley RL, Arpan A, Sacks EJ, Clemente TE, Moose SP, Reichert NA, Swaminathan K. Transformation and gene editing in the bioenergy grass Miscanthus. Biotechnology For Biofuels and Bioproducts. 15: 148. PMID 36578060 DOI: 10.1186/s13068-022-02241-8  0.257
2002 Xu F, Lagudah ES, Moose SP, Riechers DE. Tandemly duplicated Safener-induced glutathione S-transferase genes from Triticum tauschii contribute to genome- and organ-specific expression in hexaploid wheat. Plant Physiology. 130: 362-73. PMID 12226515 DOI: 10.1104/pp.004796  0.255
1997 Vicente-Carbajosa J, Moose SP, Parsons RL, Schmidt RJ. A maize zinc-finger protein binds the prolamin box in zein gene promoters and interacts with the basic leucine zipper transcriptional activator Opaque2. Proceedings of the National Academy of Sciences of the United States of America. 94: 7685-90. PMID 9207153 DOI: 10.1073/pnas.94.14.7685  0.253
2013 Venkata BP, Lauter N, Li X, Chapple C, Krupke C, Johal G, Moose S. crw1--A novel maize mutant highly susceptible to foliar damage by the western corn rootworm beetle. Plos One. 8: e71296. PMID 23951124 DOI: 10.1371/Journal.Pone.0071296  0.249
2004 Moose SP, Dudley JW, Rocheford TR. Maize selection passes the century mark: a unique resource for 21st century genomics. Trends in Plant Science. 9: 358-64. PMID 15231281 DOI: 10.1016/j.tplants.2004.05.005  0.247
2023 Nguyen C, Sagan V, Bhadra S, Moose S. UAV Multisensory Data Fusion and Multi-Task Deep Learning for High-Throughput Maize Phenotyping. Sensors (Basel, Switzerland). 23. PMID 36850425 DOI: 10.3390/s23041827  0.247
2014 Spence AK, Boddu J, Wang D, James B, Swaminathan K, Moose SP, Long SP. Transcriptional responses indicate maintenance of photosynthetic proteins as key to the exceptional chilling tolerance of C4 photosynthesis in Miscanthus × giganteus. Journal of Experimental Botany. 65: 3737-47. PMID 24958895 DOI: 10.1093/Jxb/Eru209  0.245
2021 Rogers AR, Dunne JC, Romay C, Bohn M, Buckler ES, Ciampitti IA, Edwards J, Ertl D, Flint-Garcia S, Gore MA, Graham C, Hirsch CN, Hood E, Hooker DC, Knoll J, ... ... Moose SP, et al. The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment. G3 (Bethesda, Md.). 11. PMID 33585867 DOI: 10.1093/g3journal/jkaa050  0.243
2012 Barber WT, Zhang W, Win H, Varala KK, Dorweiler JE, Hudson ME, Moose SP. Repeat associated small RNAs vary among parents and following hybridization in maize. Proceedings of the National Academy of Sciences of the United States of America. 109: 10444-9. PMID 22689990 DOI: 10.1073/pnas.1202073109  0.241
2019 Moose SP, Sisco PH. Glossy15 Controls the Epidermal Juvenile-to-Adult Phase Transition in Maize. The Plant Cell. 6: 1343-1355. PMID 12244224 DOI: 10.1105/tpc.6.10.1343  0.239
2013 Dwiyanti MS, Rudolph A, Swaminathan K, Nishiwaki A, Shimono Y, Kuwabara S, Matuura H, Nadir M, Moose S, Stewart JR, Yamada T. Genetic Analysis of Putative Triploid Miscanthus Hybrids and Tetraploid M. sacchariflorus Collected from Sympatric Populations of Kushima, Japan Bioenergy Research. 6: 486-493. DOI: 10.1007/S12155-012-9274-3  0.23
2004 Moose SP, Lauter N, Carlson SR. The maize macrohairless1 locus specifically promotes leaf blade macrohair initiation and responds to factors regulating leaf identity. Genetics. 166: 1451-61. PMID 15082562 DOI: 10.1534/genetics.166.3.1451  0.23
2018 AlKhalifah N, Campbell DA, Falcon CM, Gardiner JM, Miller ND, Romay MC, Walls R, Walton R, Yeh CT, Bohn M, Bubert J, Buckler ES, Ciampitti I, Flint-Garcia S, Gore MA, ... ... Moose SP, et al. Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets. Bmc Research Notes. 11: 452. PMID 29986751 DOI: 10.1186/S13104-018-3508-1  0.222
2012 Dweikat I, Weil C, Moose S, Kochian L, Mosier N, Ileleji K, Brown P, Peer W, Murphy A, Taheripour F, McCann M, Carpita N. Envisioning the transition to a next-generation biofuels industry in the US Midwest Biofuels, Bioproducts and Biorefining. 6: 376-386. DOI: 10.1002/Bbb.1342  0.22
2015 Gifford JM, Chae WB, Swaminathan K, Moose SP, Juvik JA. Mapping the genome of Miscanthus sinensis for QTL associated with biomass productivity Gcb Bioenergy. 7: 797-810. DOI: 10.1111/Gcbb.12201  0.219
2023 Xue X, Beuchat G, Wang J, Yu YC, Moose S, Chen J, Chen LQ. Sugar accumulation enhancement in sorghum stem is associated with reduced reproductive sink strength and increased phloem unloading activity. Frontiers in Plant Science. 14: 1233813. PMID 37767289 DOI: 10.3389/fpls.2023.1233813  0.217
2004 Hwang YS, Ciceri P, Parsons RL, Moose SP, Schmidt RJ, Huang N. The maize O2 and PBF proteins act additively to promote transcription from storage protein gene promoters in rice endosperm cells. Plant & Cell Physiology. 45: 1509-18. PMID 15564534 DOI: 10.1093/pcp/pch173  0.212
2012 Li Y, Varala K, Moose SP, Hudson ME. The inheritance pattern of 24 nt siRNA clusters in arabidopsis hybrids is influenced by proximity to transposable elements. Plos One. 7: e47043. PMID 23118865 DOI: 10.1371/Journal.Pone.0047043  0.211
2008 Lauter N, Moscou MJ, Habiger J, Moose SP. Quantitative Genetic Dissection of Shoot Architecture Traits in Maize: Towards a Functional Genomics Approach The Plant Genome. 1: 99-110. DOI: 10.3835/Plantgenome2008.06.0385  0.201
2015 Li Q, Li Y, Moose SP, Hudson ME. Transposable elements, mRNA expression level and strand-specificity of small RNAs are associated with non-additive inheritance of gene expression in hybrid plants. Bmc Plant Biology. 15: 168. PMID 26139102 DOI: 10.1186/s12870-015-0549-7  0.195
2020 McFarland BA, AlKhalifah N, Bohn M, Bubert J, Buckler ES, Ciampitti I, Edwards J, Ertl D, Gage JL, Falcon CM, Flint-Garcia S, Gore MA, Graham C, Hirsch CN, Holland JB, ... ... Moose SP, et al. Maize genomes to fields (G2F): 2014-2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets. Bmc Research Notes. 13: 71. PMID 32051026 DOI: 10.1186/S13104-020-4922-8  0.188
2024 Li M, Liu Z, Jiang N, Laws B, Tiskevich C, Moose SP, Topp CN. Topological data analysis expands the genotype to phenotype map for 3D maize root system architecture. Frontiers in Plant Science. 14: 1260005. PMID 38288407 DOI: 10.3389/fpls.2023.1260005  0.185
2012 James BT, Chen C, Rudolph A, Swaminathan K, Murray JE, Na JK, Spence AK, Smith B, Hudson ME, Moose SP, Ming R. Development of microsatellite markers in autopolyploid sugarcane and comparative analysis of conserved microsatellites in sorghum and sugarcane Molecular Breeding. 30: 661-669. DOI: 10.1007/S11032-011-9651-1  0.18
2010 Wang J, Roe B, Macmil S, Yu Q, Murray JE, Tang H, Chen C, Najar F, Wiley G, Bowers J, Van Sluys MA, Rokhsar DS, Hudson ME, Moose SP, Paterson AH, et al. Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes. Bmc Genomics. 11: 261. PMID 20416060 DOI: 10.1186/1471-2164-11-261  0.174
1991 Fontes EB, Shank BB, Wrobel RL, Moose SP, OBrian GR, Wurtzel ET, Boston RS. Characterization of an immunoglobulin binding protein homolog in the maize floury-2 endosperm mutant. The Plant Cell. 3: 483-96. PMID 1840923 DOI: 10.1105/Tpc.3.5.483  0.167
2012 Swaminathan K, Chae WB, Mitros T, Varala K, Xie L, Barling A, Glowacka K, Hall M, Jezowski S, Ming R, Hudson M, Juvik JA, Rokhsar DS, Moose SP. A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy. Bmc Genomics. 13: 142. PMID 22524439 DOI: 10.1186/1471-2164-13-142  0.16
2013 Abe A, Menkir A, Moose SP, Adetimirin VO, Olaniyan AB. Genetic Variation for Nitrogen-Use Efficiency Among Selected Tropical Maize Hybrids Differing in Grain Yield Potential Journal of Crop Improvement. 27: 31-52. DOI: 10.1080/15427528.2012.721483  0.159
2022 Cao S, Wang L, Han T, Ye W, Liu Y, Sun Y, Moose SP, Song Q, Chen ZJ. Small RNAs mediate transgenerational inheritance of genome-wide trans-acting epialleles in maize. Genome Biology. 23: 53. PMID 35139883 DOI: 10.1186/s13059-022-02614-0  0.154
2007 Uribelarrea M, Moose SP, Below FE. Divergent selection for grain protein affects nitrogen use in maize hybrids Field Crops Research. 100: 82-90. DOI: 10.1016/J.FCR.2006.05.008  0.152
2008 Wang D, Portis AR, Moose SP, Long SP. Cool C4 photosynthesis: pyruvate Pi dikinase expression and activity corresponds to the exceptional cold tolerance of carbon assimilation in Miscanthus x giganteus. Plant Physiology. 148: 557-67. PMID 18539777 DOI: 10.1104/Pp.108.120709  0.151
2008 Moose SP, Mumm RH. Molecular plant breeding as the foundation for 21st century crop improvement. Plant Physiology. 147: 969-77. PMID 18612074 DOI: 10.1104/pp.108.118232  0.145
2004 Uribelarrea M, Below FE, Moose SP. Grain Composition and Productivity of Maize Hybrids Derived from the Illinois Protein Strains in Response to Variable Nitrogen Supply Crop Science. 44: 1593-1600. DOI: 10.2135/CROPSCI2004.1593  0.143
2005 Lauter N, Kampani A, Carlson S, Goebel M, Moose SP. microRNA172 down-regulates glossy15 to promote vegetative phase change in maize. Proceedings of the National Academy of Sciences of the United States of America. 102: 9412-7. PMID 15958531 DOI: 10.1073/pnas.0503927102  0.142
2019 Corray S, Utterback P, Ramchandran D, Singh V, Moose SP, Parsons CM. Nutritional evaluation of 3 types of novel ethanol coproducts. Poultry Science. 98: 2933-2939. PMID 30915441 DOI: 10.3382/ps/pez043  0.141
2010 Swaminathan K, Alabady MS, Varala K, De Paoli E, Ho I, Rokhsar DS, Arumuganathan AK, Ming R, Green PJ, Meyers BC, Moose SP, Hudson ME. Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses. Genome Biology. 11: R12. PMID 20128909 DOI: 10.1186/Gb-2010-11-2-R12  0.137
2009 Moose SP, Muszynski MG, Rogowsky P, Guo M. Putting the Function in Maize Genomics The Plant Genome. 2: 103-106. DOI: 10.3835/PLANTGENOME2009.06.0004ED  0.136
2012 White WG, Vincent ML, Moose SP, Below FE. The sugar, biomass and biofuel potential of temperate by tropical maize hybrids Gcb Bioenergy. 4: 496-508. DOI: 10.1111/J.1757-1707.2012.01158.X  0.131
2008 Wang D, Naidu SL, Portis AR, Moose SP, Long SP. Can the cold tolerance of C4 photosynthesis in Miscanthus x giganteus relative to Zea mays be explained by differences in activities and thermal properties of Rubisco? Journal of Experimental Botany. 59: 1779-87. PMID 18503044 DOI: 10.1093/Jxb/Ern074  0.128
2003 Naidu SL, Moose SP, AL-Shoaibi AK, Raines CA, Long SP. Cold tolerance of C4 photosynthesis in Miscanthus x giganteus: adaptation in amounts and sequence of C4 photosynthetic enzymes. Plant Physiology. 132: 1688-97. PMID 12857847 DOI: 10.1104/Pp.103.021790  0.128
2024 Zhang Z, Gomes Viana JP, Zhang B, Walden KKO, Müller Paul H, Moose SP, Morris GP, Daum C, Barry KW, Shakoor N, Hudson ME. Major impacts of widespread structural variation on sorghum. Genome Research. PMID 38479835 DOI: 10.1101/gr.278396.123  0.119
2018 Ramchandran D, Hojilla-Evangelista MP, Moose SP, Rausch KD, Tumbleson ME, Singh V. Changes in Corn Protein Content During Storage and Their Relationship with Dry Grind Ethanol Production Journal of the American Oil Chemists' Society. 95: 923-932. DOI: 10.1002/Aocs.12070  0.094
2016 Ramchandran D, Hojilla-Evangelista MP, Moose SP, Rausch KD, Tumbleson ME, Singh V. Maize Proximate Composition and Physical Properties Correlations to Dry-Grind Ethanol Concentrations Cereal Chemistry Journal. 93: 414-418. DOI: 10.1094/Cchem-09-15-0187-R  0.089
2004 Seebauer JR, Moose SP, Fabbri BJ, Crossland LD, Below FE. Amino acid metabolism in maize earshoots. Implications for assimilate preconditioning and nitrogen signaling. Plant Physiology. 136: 4326-34. PMID 15531710 DOI: 10.1104/pp.104.043778  0.089
2017 Ramchandran D, Moose SP, Low K, Arp J, Parsons CM, Singh V. Ethanol yields and elevated amino acids in distillers dried grains with solubles from maize grain with higher concentrations of essential amino acids Industrial Crops and Products. 103: 244-250. DOI: 10.1016/J.INDCROP.2017.03.049  0.07
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