| Year |
Citation |
Score |
| 2020 |
Fan L, Xu S, Zhang F, Cui X, Fazli L, Gleave M, Clark DJ, Yang A, Hussain A, Rassool F, Qi J. Histone demethylase JMJD1A promotes expression of DNA repair factors and radio-resistance of prostate cancer cells. Cell Death & Disease. 11: 214. PMID 32238799 DOI: 10.1038/S41419-020-2405-4 |
0.317 |
|
| 2019 |
Huseby CJ, Hoffman CN, Cooper GL, Cocuron JC, Alonso AP, Thomas SN, Yang AJ, Kuret J. Quantification of Tau Protein Lysine Methylation in Aging and Alzheimer's Disease. Journal of Alzheimer's Disease : Jad. PMID 31450505 DOI: 10.3233/Jad-190604 |
0.4 |
|
| 2017 |
Thomas SN, Yang AJ. Mass Spectrometry Analysis of Lysine Posttranslational Modifications of Tau Protein from Alzheimer's Disease Brain. Methods in Molecular Biology (Clifton, N.J.). 1523: 161-177. PMID 27975250 DOI: 10.1007/978-1-4939-6598-4_10 |
0.43 |
|
| 2016 |
Peng Z, Liao Z, Matsumoto Y, Yang A, Tomkinson AE. Human DNA Ligase I Interacts with and is Targeted for Degradation by the DCAF7 Specificity Factor of the CUL4-DDB1 Ubiquitin Ligase Complex. The Journal of Biological Chemistry. PMID 27573245 DOI: 10.1074/Jbc.M116.746198 |
0.739 |
|
| 2016 |
Clark DJ, Mei Y, Sun S, Zhang H, Yang AJ, Mao L. Glycoproteomic Approach Identifies KRAS as a Positive Regulator of CREG1 in Non-small Cell Lung Cancer Cells. Theranostics. 6: 65-77. PMID 26722374 DOI: 10.7150/Thno.12350 |
0.303 |
|
| 2015 |
Clark DJ, Fondrie WE, Yang A, Mao L. Triple SILAC quantitative proteomic analysis reveals differential abundance of cell signaling proteins between normal and lung cancer-derived exosomes. Journal of Proteomics. PMID 26739763 DOI: 10.1016/J.Jprot.2015.12.023 |
0.387 |
|
| 2015 |
Clark DJ, Fondrie WE, Liao Z, Hanson PI, Fulton A, Mao L, Yang AJ. Redefining the breast cancer exosome proteome by tandem mass tag quantitative proteomics and multivariate cluster analysis. Analytical Chemistry. PMID 26378940 DOI: 10.1021/Acs.Analchem.5B02586 |
0.751 |
|
| 2015 |
Mei Y, Wang Y, Kumari P, Shetty AC, Clark D, Gable T, MacKerell AD, Ma MZ, Weber DJ, Yang AJ, Edelman MJ, Mao L. A piRNA-like small RNA interacts with and modulates p-ERM proteins in human somatic cells. Nature Communications. 6: 7316. PMID 26095918 DOI: 10.1038/Ncomms8316 |
0.317 |
|
| 2015 |
Lindberg I, Pang HW, Stains JP, Clark D, Yang AJ, Bonewald L, Li KZ. FGF23 is endogenously phosphorylated in bone cells. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. 30: 449-54. PMID 25195776 DOI: 10.1002/Jbmr.2354 |
0.308 |
|
| 2014 |
Funk KE, Thomas SN, Schafer KN, Cooper GL, Liao Z, Clark DJ, Yang AJ, Kuret J. Lysine methylation is an endogenous post-translational modification of tau protein in human brain and a modulator of aggregation propensity. The Biochemical Journal. 462: 77-88. PMID 24869773 DOI: 10.1042/Bj20140372 |
0.739 |
|
| 2014 |
Lima F, Ding D, Goetz W, Yang AJ, Baulch JE. High LET (56)Fe ion irradiation induces tissue-specific changes in DNA methylation in the mouse. Environmental and Molecular Mutagenesis. 55: 266-77. PMID 24723241 DOI: 10.1002/Em.21832 |
0.324 |
|
| 2013 |
Thomas SN, Liao Z, Clark D, Chen Y, Samadani R, Mao L, Ann DK, Baulch JE, Shapiro P, Yang AJ. Exosomal Proteome Profiling: A Potential Multi-Marker Cellular Phenotyping Tool to Characterize Hypoxia-Induced Radiation Resistance in Breast Cancer. Proteomes. 1: 87-108. PMID 24860738 DOI: 10.3390/Proteomes1020087 |
0.726 |
|
| 2013 |
Liao Z, Thomas SN, Wan Y, Lin HH, Ann DK, Yang AJ. An Internal Standard-Assisted Synthesis and Degradation Proteomic Approach Reveals the Potential Linkage between VPS4B Depletion and Activation of Fatty Acid β-Oxidation in Breast Cancer Cells. International Journal of Proteomics. 2013: 291415. PMID 23431444 DOI: 10.1155/2013/291415 |
0.753 |
|
| 2012 |
Peng Z, Liao Z, Dziegielewska B, Matsumoto Y, Thomas S, Wan Y, Yang A, Tomkinson AE. Phosphorylation of serine 51 regulates the interaction of human DNA ligase I with replication factor C and its participation in DNA replication and repair. The Journal of Biological Chemistry. 287: 36711-9. PMID 22952233 DOI: 10.1074/Jbc.M112.383570 |
0.734 |
|
| 2012 |
Thomas SN, Waters KM, Morgan WF, Yang AJ, Baulch JE. Quantitative proteomic analysis of mitochondrial proteins reveals prosurvival mechanisms in the perpetuation of radiation-induced genomic instability. Free Radical Biology & Medicine. 53: 618-28. PMID 22569412 DOI: 10.1016/J.Freeradbiomed.2012.03.025 |
0.322 |
|
| 2012 |
Liao Z, Wan Y, Thomas SN, Yang AJ. IsoQuant: a software tool for stable isotope labeling by amino acids in cell culture-based mass spectrometry quantitation. Analytical Chemistry. 84: 4535-43. PMID 22519468 DOI: 10.1021/Ac300510T |
0.74 |
|
| 2012 |
Lin HH, Li X, Chen JL, Sun X, Cooper FN, Chen YR, Zhang W, Chung Y, Li A, Cheng CT, Yang L, Deng X, Liu X, Yen Y, Johnson DL, ... ... Yang A, et al. Identification of an AAA ATPase VPS4B-dependent pathway that modulates epidermal growth factor receptor abundance and signaling during hypoxia. Molecular and Cellular Biology. 32: 1124-38. PMID 22252323 DOI: 10.1128/Mcb.06053-11 |
0.339 |
|
| 2012 |
Thomas SN, Funk KE, Wan Y, Liao Z, Davies P, Kuret J, Yang AJ. Dual modification of Alzheimer's disease PHF-tau protein by lysine methylation and ubiquitylation: a mass spectrometry approach. Acta Neuropathologica. 123: 105-17. PMID 22033876 DOI: 10.1007/S00401-011-0893-0 |
0.742 |
|
| 2011 |
Thomas SN, Wan Y, Liao Z, Hanson PI, Yang AJ. Stable isotope labeling with amino acids in cell culture based mass spectrometry approach to detect transient protein interactions using substrate trapping. Analytical Chemistry. 83: 5511-8. PMID 21619060 DOI: 10.1021/Ac200950K |
0.758 |
|
| 2011 |
Yang DS, Stavrides P, Mohan PS, Kaushik S, Kumar A, Ohno M, Schmidt SD, Wesson DW, Bandyopadhyay U, Jiang Y, Pawlik M, Peterhoff CM, Yang AJ, Wilson DA, St George-Hyslop P, et al. Therapeutic effects of remediating autophagy failure in a mouse model of Alzheimer disease by enhancing lysosomal proteolysis. Autophagy. 7: 788-9. PMID 21464620 DOI: 10.4161/Auto.7.7.15596 |
0.317 |
|
| 2011 |
Yang DS, Stavrides P, Mohan PS, Kaushik S, Kumar A, Ohno M, Schmidt SD, Wesson D, Bandyopadhyay U, Jiang Y, Pawlik M, Peterhoff CM, Yang AJ, Wilson DA, St George-Hyslop P, et al. Reversal of autophagy dysfunction in the TgCRND8 mouse model of Alzheimer's disease ameliorates amyloid pathologies and memory deficits. Brain : a Journal of Neurology. 134: 258-77. PMID 21186265 DOI: 10.1093/Brain/Awq341 |
0.347 |
|
| 2009 |
Thomas SN, Cripps D, Yang AJ. Proteomic analysis of protein phosphorylation and ubiquitination in Alzheimer's disease. Methods in Molecular Biology (Clifton, N.J.). 566: 109-21. PMID 20058168 DOI: 10.1007/978-1-59745-562-6_8 |
0.434 |
|
| 2009 |
Cao X, Plasencia C, Kanzaki A, Yang A, Burke TR, Neamati N. Elucidation of the molecular mechanisms of a salicylhydrazide class of compounds by proteomic analysis. Current Cancer Drug Targets. 9: 189-201. PMID 19275759 DOI: 10.2174/156800909787580971 |
0.331 |
|
| 2009 |
Vijayakumar S, Dziegielewska B, Levin DS, Song W, Yin J, Yang A, Matsumoto Y, Bermudez VP, Hurwitz J, Tomkinson AE. Phosphorylation of human DNA ligase I regulates its interaction with replication factor C and its participation in DNA replication and DNA repair. Molecular and Cellular Biology. 29: 2042-52. PMID 19223468 DOI: 10.1128/Mcb.01732-08 |
0.356 |
|
| 2008 |
Wan Y, Cripps D, Thomas S, Campbell P, Ambulos N, Chen T, Yang A. PhosphoScan: a probability-based method for phosphorylation site prediction using MS2/MS3 pair information. Journal of Proteome Research. 7: 2803-11. PMID 18549264 DOI: 10.1021/Pr700773P |
0.316 |
|
| 2008 |
Miller JH, Jin S, Morgan WF, Yang A, Wan Y, Aypar U, Peters JS, Springer DL. Profiling mitochondrial proteins in radiation-induced genome-unstable cell lines with persistent oxidative stress by mass spectrometry. Radiation Research. 169: 700-6. PMID 18494543 DOI: 10.1667/Rr1186.1 |
0.375 |
|
| 2007 |
Tekirian TL, Thomas SN, Yang A. Advancing signaling networks through proteomics. Expert Review of Proteomics. 4: 573-83. PMID 17705714 DOI: 10.1586/14789450.4.4.573 |
0.369 |
|
| 2007 |
Lee YK, Thomas SN, Yang AJ, Ann DK. Doxorubicin down-regulates Kruppel-associated box domain-associated protein 1 sumoylation that relieves its transcription repression on p21WAF1/CIP1 in breast cancer MCF-7 cells. The Journal of Biological Chemistry. 282: 1595-606. PMID 17079232 DOI: 10.1074/Jbc.M606306200 |
0.385 |
|
| 2006 |
Cripps D, Thomas SN, Jeng Y, Yang F, Davies P, Yang AJ. Alzheimer disease-specific conformation of hyperphosphorylated paired helical filament-Tau is polyubiquitinated through Lys-48, Lys-11, and Lys-6 ubiquitin conjugation. The Journal of Biological Chemistry. 281: 10825-38. PMID 16443603 DOI: 10.1074/Jbc.M512786200 |
0.424 |
|
| 2005 |
Soreghan BA, Lu BW, Thomas SN, Duff K, Rakhmatulin EA, Nikolskaya T, Chen T, Yang AJ. Using proteomics and network analysis to elucidate the consequences of synaptic protein oxidation in a PS1 + AbetaPP mouse model of Alzheimer's disease. Journal of Alzheimer's Disease : Jad. 8: 227-41. PMID 16340081 DOI: 10.3233/Jad-2005-8302 |
0.435 |
|
| 2005 |
Thomas SN, Soreghan BA, Nistor M, Sarsoza F, Head E, Yang AJ. Reduced neuronal expression of synaptic transmission modulator HNK-1/neural cell adhesion molecule as a potential consequence of amyloid beta-mediated oxidative stress: a proteomic approach. Journal of Neurochemistry. 92: 705-17. PMID 15686472 DOI: 10.1111/J.1471-4159.2004.02892.X |
0.347 |
|
| 2004 |
Schiewe AJ, Margol L, Soreghan BA, Thomas SN, Yang AJ. Rapid characterization of amyloid-beta side-chain oxidation by tandem mass spectrometry and the scoring algorithm for spectral analysis. Pharmaceutical Research. 21: 1094-102. PMID 15290847 DOI: 10.1023/B:Pham.0000032994.36343.02 |
0.355 |
|
| 2003 |
Soreghan BA, Yang F, Thomas SN, Hsu J, Yang AJ. High-throughput proteomic-based identification of oxidatively induced protein carbonylation in mouse brain. Pharmaceutical Research. 20: 1713-20. PMID 14661913 DOI: 10.1023/B:Pham.0000003366.25263.78 |
0.367 |
|
| 2003 |
Soreghan B, Thomas SN, Yang AJ. Aberrant sphingomyelin/ceramide metabolic-induced neuronal endosomal/lysosomal dysfunction: potential pathological consequences in age-related neurodegeneration. Advanced Drug Delivery Reviews. 55: 1515-24. PMID 14597144 DOI: 10.1016/J.Addr.2003.07.007 |
0.319 |
|
| 1999 |
Yang AJ, Chandswangbhuvana D, Shu T, Henschen A, Glabe CG. Intracellular accumulation of insoluble, newly synthesized abetan-42 in amyloid precursor protein-transfected cells that have been treated with Abeta1-42. The Journal of Biological Chemistry. 274: 20650-6. PMID 10400697 DOI: 10.1074/Jbc.274.29.20650 |
0.334 |
|
| 1998 |
Bahr BA, Hoffman KB, Yang AJ, Hess US, Glabe CG, Lynch G. Amyloid beta protein is internalized selectively by hippocampal field CA1 and causes neurons to accumulate amyloidogenic carboxyterminal fragments of the amyloid precursor protein. The Journal of Comparative Neurology. 397: 139-47. PMID 9671284 DOI: 10.1002/(Sici)1096-9861(19980720)397:1<139::Aid-Cne10>3.0.Co;2-K |
0.343 |
|
| 1997 |
Weber LL, Leissring MA, Yang AJ, Glabe CG, Cribbs DH, LaFerla FM. Presenilin-1 immunoreactivity is localized intracellularly in Alzheimer's disease brain, but not detected in amyloid plaques. Experimental Neurology. 143: 37-44. PMID 9000444 DOI: 10.1006/Exnr.1996.6348 |
0.334 |
|
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