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John L. Spudich - Publications

Affiliations: 
Biochemistry and Molecular Biology University of Texas Health Science Center at Houston, Houston, TX, United States 
Area:
photosensory receptors
Website:
http://www-bmb.med.uth.tmc.edu/faculty/john-spudich.html

176 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Yi A, Mamaeva NV, Li H, Spudich JL, Rothschild KJ. Resonance Raman Study of an Anion Channelrhodopsin: Effects of Mutations Near the Retinylidene Schiff Base. Biochemistry. PMID 27039989 DOI: 10.1021/acs.biochem.6b00104  1
2015 Li H, Sineshchekov OA, da Silva GF, Spudich JL. In Vitro Demonstration of Dual Light-Driven Na(+)/H(+) Pumping by a Microbial Rhodopsin. Biophysical Journal. 109: 1446-53. PMID 26445445 DOI: 10.1016/j.bpj.2015.08.018  1
2015 Govorunova EG, Sineshchekov OA, Janz R, Liu X, Spudich JL. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics. Science (New York, N.Y.). PMID 26113638 DOI: 10.1126/science.aaa7484  1
2015 da Silva GF, Goblirsch BR, Tsai AL, Spudich JL. Cation-Specific Conformations in a Dual-Function Ion-Pumping Microbial Rhodopsin. Biochemistry. 54: 3950-9. PMID 26037033 DOI: 10.1021/bi501386d  1
2015 Szundi I, Li H, Chen E, Bogomolni R, Spudich JL, Kliger DS. Platymonas Subcordiformis Channelrhodopsin-2 Function. Part I: The Photochemical Reaction Cycle. The Journal of Biological Chemistry. PMID 25971972 DOI: 10.1074/jbc.M114.631614  1
2015 Ogren JI, Yi A, Mamaev S, Li H, Spudich JL, Rothschild KJ. Proton transfers in a channelrhodopsin-1 studied by Fourier transform infrared (FTIR) difference spectroscopy and site-directed mutagenesis. The Journal of Biological Chemistry. 290: 12719-30. PMID 25802337 DOI: 10.1074/jbc.M114.634840  1
2015 Ogren JI, Yi A, Mamaev S, Li H, Lugtenburg J, DeGrip WJ, Spudich JL, Rothschild KJ. Comparison of the structural changes occurring during the primary phototransition of two different channelrhodopsins from Chlamydomonas algae. Biochemistry. 54: 377-88. PMID 25469620 DOI: 10.1021/bi501243y  1
2014 Spudich JL. Channelrhodopsin photochromic reactions provide multicolor optogenetic control. Biophysical Journal. 107: 1489-90. PMID 25296299 DOI: 10.1016/j.bpj.2014.08.021  1
2014 Sasaki J, Takahashi H, Furutani Y, Sineshchekov OA, Spudich JL, Kandori H. His166 is the Schiff base proton acceptor in attractant phototaxis receptor sensory rhodopsin I. Biochemistry. 53: 5923-9. PMID 25162914 DOI: 10.1021/bi500831n  1
2014 Ogren JI, Mamaev S, Russano D, Li H, Spudich JL, Rothschild KJ. Retinal chromophore structure and Schiff base interactions in red-shifted channelrhodopsin-1 from Chlamydomonas augustae. Biochemistry. 53: 3961-70. PMID 24869998 DOI: 10.1021/bi500445c  1
2014 Li H, Govorunova EG, Sineshchekov OA, Spudich JL. Role of a helix B lysine residue in the photoactive site in channelrhodopsins. Biophysical Journal. 106: 1607-17. PMID 24739160 DOI: 10.1016/j.bpj.2014.03.002  1
2014 Spudich JL. A molecular voltmeter based on fluorescence dynamics. Biophysical Journal. 106: 497-9. PMID 24507590 DOI: 10.1016/j.bpj.2013.12.029  1
2014 Spudich JL, Sineshchekov OA, Govorunova EG. Mechanism divergence in microbial rhodopsins. Biochimica Et Biophysica Acta. 1837: 546-52. PMID 23831552 DOI: 10.1016/j.bbabio.2013.06.006  1
2013 Ran T, Ozorowski G, Gao Y, Sineshchekov OA, Wang W, Spudich JL, Luecke H. Cross-protomer interaction with the photoactive site in oligomeric proteorhodopsin complexes. Acta Crystallographica. Section D, Biological Crystallography. 69: 1965-80. PMID 24100316 DOI: 10.1107/S0907444913017575  1
2013 Govorunova EG, Sineshchekov OA, Li H, Janz R, Spudich JL. Characterization of a highly efficient blue-shifted channelrhodopsin from the marine alga Platymonas subcordiformis. The Journal of Biological Chemistry. 288: 29911-22. PMID 23995841 DOI: 10.1074/jbc.M113.505495  1
2013 Sineshchekov OA, Govorunova EG, Wang J, Li H, Spudich JL. Intramolecular proton transfer in channelrhodopsins. Biophysical Journal. 104: 807-17. PMID 23442959 DOI: 10.1016/j.bpj.2013.01.002  1
2012 Sineshchekov OA, Govorunova EG, Wang J, Spudich JL. Enhancement of the long-wavelength sensitivity of optogenetic microbial rhodopsins by 3,4-dehydroretinal. Biochemistry. 51: 4499-506. PMID 22577956 DOI: 10.1021/bi2018859  1
2012 Wang J, Sasaki J, Tsai AL, Spudich JL. HAMP domain signal relay mechanism in a sensory rhodopsin-transducer complex. The Journal of Biological Chemistry. 287: 21316-25. PMID 22511775 DOI: 10.1074/jbc.M112.344622  1
2012 Spudich EN, Ozorowski G, Schow EV, Tobias DJ, Spudich JL, Luecke H. A transporter converted into a sensor, a phototaxis signaling mutant of bacteriorhodopsin at 3.0 Å. Journal of Molecular Biology. 415: 455-63. PMID 22123198 DOI: 10.1016/j.jmb.2011.11.025  1
2012 Hou SY, Govorunova EG, Ntefidou M, Lane CE, Spudich EN, Sineshchekov OA, Spudich JL. Diversity of Chlamydomonas channelrhodopsins. Photochemistry and Photobiology. 88: 119-28. PMID 22044280 DOI: 10.1111/j.1751-1097.2011.01027.x  1
2012 Bayraktar H, Fields AP, Kralj JM, Spudich JL, Rothschild KJ, Cohen AE. Ultrasensitive measurements of microbial rhodopsin photocycles using photochromic FRET. Photochemistry and Photobiology. 88: 90-7. PMID 22010969 DOI: 10.1111/j.1751-1097.2011.01011.x  1
2012 Atamna-Ismaeel N, Finkel OM, Glaser F, Sharon I, Schneider R, Post AF, Spudich JL, von Mering C, Vorholt JA, Iluz D, Béjà O, Belkin S. Microbial rhodopsins on leaf surfaces of terrestrial plants. Environmental Microbiology. 14: 140-6. PMID 21883799 DOI: 10.1111/j.1462-2920.2011.02554.x  1
2011 Wu M, Tong S, Gonzalez J, Jayaraman V, Spudich JL, Zheng L. Structural basis of the Ca2+ inhibitory mechanism of Drosophila Na+/Ca2+ exchanger CALX and its modification by alternative splicing. Structure (London, England : 1993). 19: 1509-17. PMID 22000518 DOI: 10.1016/j.str.2011.07.008  1
2011 Kondoh M, Inoue K, Sasaki J, Spudich JL, Terazima M. Transient dissociation of the transducer protein from anabaena sensory rhodopsin concomitant with formation of the M state produced upon photoactivation. Journal of the American Chemical Society. 133: 13406-12. PMID 21774544 DOI: 10.1021/ja202329u  1
2011 Govorunova EG, Spudich EN, Lane CE, Sineshchekov OA, Spudich JL. New channelrhodopsin with a red-shifted spectrum and rapid kinetics from Mesostigma viride. Mbio. 2: e00115-11. PMID 21693637 DOI: 10.1128/mBio.00115-11  1
2011 Sasaki J, Takahashi H, Furutani Y, Kandori H, Spudich JL. Sensory rhodopsin-I as a bidirectional switch: opposite conformational changes from the same photoisomerization. Biophysical Journal. 100: 2178-83. PMID 21539785 DOI: 10.1016/j.bpj.2011.03.026  1
2011 Sasaki J, Tsai AL, Spudich JL. Opposite displacement of helix F in attractant and repellent signaling by sensory rhodopsin-Htr complexes. The Journal of Biological Chemistry. 286: 18868-77. PMID 21454480 DOI: 10.1074/jbc.M110.200345  1
2010 Sineshchekov OA, Sasaki J, Wang J, Spudich JL. Attractant and repellent signaling conformers of sensory rhodopsin-transducer complexes. Biochemistry. 49: 6696-704. PMID 20590098 DOI: 10.1021/bi100798w  1
2009 Sineshchekov OA, Govorunova EG, Spudich JL. Photosensory functions of channelrhodopsins in native algal cells. Photochemistry and Photobiology. 85: 556-63. PMID 19222796 DOI: 10.1111/j.1751-1097.2008.00524.x  1
2009 Bergo VB, Spudich EN, Spudich JL, Rothschild KJ. Active water in protein-protein communication within the membrane: the case of SRII-HtrII signal relay. Biochemistry. 48: 811-3. PMID 19187030 DOI: 10.1021/bi802180a  1
2009 Bergo VB, Sineshchekov OA, Kralj JM, Partha R, Spudich EN, Rothschild KJ, Spudich JL. His-75 in proteorhodopsin, a novel component in light-driven proton translocation by primary pumps. The Journal of Biological Chemistry. 284: 2836-43. PMID 19015272 DOI: 10.1074/jbc.M803792200  1
2008 Sineshchekov OA, Sasaki J, Phillips BJ, Spudich JL. A Schiff base connectivity switch in sensory rhodopsin signaling. Proceedings of the National Academy of Sciences of the United States of America. 105: 16159-64. PMID 18852467 DOI: 10.1073/pnas.0807486105  1
2008 Amsden JJ, Kralj JM, Bergo VB, Spudich EN, Spudich JL, Rothschild KJ. Different structural changes occur in blue- and green-proteorhodopsins during the primary photoreaction. Biochemistry. 47: 11490-8. PMID 18842006 DOI: 10.1021/bi800945t  1
2008 Kralj JM, Spudich EN, Spudich JL, Rothschild KJ. Raman spectroscopy reveals direct chromophore interactions in the Leu/Gln105 spectral tuning switch of proteorhodopsins. The Journal of Physical Chemistry. B. 112: 11770-6. PMID 18717545 DOI: 10.1021/jp802629e  1
2008 Hoff WD, Spudich JL. Single-molecule tour de force: teasing apart a signaling complex. Structure (London, England : 1993). 16: 1149-50. PMID 18682214 DOI: 10.1016/j.str.2008.07.004  1
2008 Ito M, Sudo Y, Furutani Y, Okitsu T, Wada A, Homma M, Spudich JL, Kandori H. Steric constraint in the primary photoproduct of sensory rhodopsin II is a prerequisite for light-signal transfer to HtrII. Biochemistry. 47: 6208-15. PMID 18479149 DOI: 10.1021/bi8003507  1
2008 Sasaki J, Spudich JL. Signal transfer in haloarchaeal sensory rhodopsin- transducer complexes. Photochemistry and Photobiology. 84: 863-8. PMID 18346091 DOI: 10.1111/j.1751-1097.2008.00314.x  1
2008 Kralj JM, Bergo VB, Amsden JJ, Spudich EN, Spudich JL, Rothschild KJ. Protonation state of Glu142 differs in the green- and blue-absorbing variants of proteorhodopsin. Biochemistry. 47: 3447-53. PMID 18284210 DOI: 10.1021/bi7018964  1
2008 Furutani Y, Takahashi H, Sasaki J, Sudo Y, Spudich JL, Kandori H. Structural changes of sensory rhodopsin I and its transducer protein are dependent on the protonated state of Asp76. Biochemistry. 47: 2875-83. PMID 18220358 DOI: 10.1021/bi702050c  1
2008 Inoue K, Sasaki J, Spudich JL, Terazima M. Signal transmission through the HtrII transducer alters the interaction of two alpha-helices in the HAMP domain. Journal of Molecular Biology. 376: 963-70. PMID 18199454 DOI: 10.1016/j.jmb.2007.12.026  1
2008 Spudich JL, Spudich EN. The Simplest Eyes: Rhodopsin-Mediated Phototaxis Reception in Microorganisms Animal Models in Eye Research. 6-14. DOI: 10.1016/B978-0-12-374169-1.00002-3  1
2007 Sasaki J, Nara T, Spudich EN, Spudich JL. Constitutive activity in chimeras and deletions localize sensory rhodopsin II/HtrII signal relay to the membrane-inserted domain. Molecular Microbiology. 66: 1321-30. PMID 17986191 DOI: 10.1111/j.1365-2958.2007.05983.x  1
2007 Amsden JJ, Kralj JM, Chieffo LR, Wang X, Erramilli S, Spudich EN, Spudich JL, Ziegler LD, Rothschild KJ. Subpicosecond protein backbone changes detected during the green-absorbing proteorhodopsin primary photoreaction. The Journal of Physical Chemistry. B. 111: 11824-31. PMID 17880126 DOI: 10.1021/jp073490r  1
2007 Sudo Y, Furutani Y, Spudich JL, Kandori H. Early photocycle structural changes in a bacteriorhodopsin mutant engineered to transmit photosensory signals. The Journal of Biological Chemistry. 282: 15550-8. PMID 17387174 DOI: 10.1074/jbc.M701271200  1
2007 Sasaki J, Phillips BJ, Chen X, Van Eps N, Tsai AL, Hubbell WL, Spudich JL. Different dark conformations function in color-sensitive photosignaling by the sensory rhodopsin I-HtrI complex. Biophysical Journal. 92: 4045-53. PMID 17351006 DOI: 10.1529/biophysj.106.101121  1
2007 Vogeley L, Trivedi VD, Sineshchekov OA, Spudich EN, Spudich JL, Luecke H. Crystal structure of the Anabaena sensory rhodopsin transducer. Journal of Molecular Biology. 367: 741-51. PMID 17289074 DOI: 10.1016/j.jmb.2006.11.074  1
2007 Inoue K, Sasaki J, Spudich JL, Terazima M. Laser-induced transient grating analysis of dynamics of interaction between sensory rhodopsin II D75N and the HtrII transducer. Biophysical Journal. 92: 2028-40. PMID 17189313 DOI: 10.1529/biophysj.106.097493  1
2006 Sudo Y, Spudich JL. Three strategically placed hydrogen-bonding residues convert a proton pump into a sensory receptor. Proceedings of the National Academy of Sciences of the United States of America. 103: 16129-34. PMID 17050685 DOI: 10.1073/pnas.0607467103  1
2006 Sineshchekov OA, Spudich EN, Trivedi VD, Spudich JL. Role of the cytoplasmic domain in Anabaena sensory rhodopsin photocycling: vectoriality of Schiff base deprotonation. Biophysical Journal. 91: 4519-27. PMID 17012323 DOI: 10.1529/biophysj.106.093641  1
2006 Sharma AK, Spudich JL, Doolittle WF. Microbial rhodopsins: functional versatility and genetic mobility. Trends in Microbiology. 14: 463-9. PMID 17008099 DOI: 10.1016/j.tim.2006.09.006  1
2006 Spudich JL. The multitalented microbial sensory rhodopsins. Trends in Microbiology. 14: 480-7. PMID 17005405 DOI: 10.1016/j.tim.2006.09.005  1
2006 Sudo Y, Furutani Y, Kandori H, Spudich JL. Functional importance of the interhelical hydrogen bond between Thr204 and Tyr174 of sensory rhodopsin II and its alteration during the signaling process. The Journal of Biological Chemistry. 281: 34239-45. PMID 16968701 DOI: 10.1074/jbc.M605907200  1
2006 Bergo VB, Ntefidou M, Trivedi VD, Amsden JJ, Kralj JM, Rothschild KJ, Spudich JL. Conformational changes in the photocycle of Anabaena sensory rhodopsin: absence of the Schiff base counterion protonation signal. The Journal of Biological Chemistry. 281: 15208-14. PMID 16537532 DOI: 10.1074/jbc.M600033200  1
2005 Sineshchekov OA, Govorunova EG, Jung KH, Zauner S, Maier UG, Spudich JL. Rhodopsin-mediated photoreception in cryptophyte flagellates. Biophysical Journal. 89: 4310-9. PMID 16150961 DOI: 10.1529/biophysj.105.070920  1
2005 Sabehi G, Loy A, Jung KH, Partha R, Spudich JL, Isaacson T, Hirschberg J, Wagner M, Béjà O. New insights into metabolic properties of marine bacteria encoding proteorhodopsins. Plos Biology. 3: e273. PMID 16008504 DOI: 10.1371/journal.pbio.0030273  1
2005 Bergo VB, Spudich EN, Rothschild KJ, Spudich JL. Photoactivation perturbs the membrane-embedded contacts between sensory rhodopsin II and its transducer. The Journal of Biological Chemistry. 280: 28365-9. PMID 15951432 DOI: 10.1074/jbc.M505555200  1
2005 Sineshchekov OA, Trivedi VD, Sasaki J, Spudich JL. Photochromicity of Anabaena sensory rhodopsin, an atypical microbial receptor with a cis-retinal light-adapted form. The Journal of Biological Chemistry. 280: 14663-8. PMID 15710603 DOI: 10.1074/jbc.M501416200  1
2005 Sineshchekov OA, Spudich JL. Sensory Rhodopsin Signaling in Green Flagellate Algae Handbook of Photosensory Receptors. 25-42. DOI: 10.1002/352760510X.ch2  1
2005 Spudich JL, Jung KH. Microbial Rhodopsins: Phylogenetic and Functional Diversity Handbook of Photosensory Receptors. 1-23. DOI: 10.1002/352760510X.ch1  1
2005 Spudich JL, Briggs W. Preface Handbook of Photosensory Receptors. xvii. DOI: 10.1002/352760510X  1
2004 Vogeley L, Sineshchekov OA, Trivedi VD, Sasaki J, Spudich JL, Luecke H. Anabaena sensory rhodopsin: a photochromic color sensor at 2.0 A. Science (New York, N.Y.). 306: 1390-3. PMID 15459346 DOI: 10.1126/science.1103943  1
2004 Yang CS, Sineshchekov O, Spudich EN, Spudich JL. The cytoplasmic membrane-proximal domain of the HtrII transducer interacts with the E-F loop of photoactivated Natronomonas pharaonis sensory rhodopsin II. The Journal of Biological Chemistry. 279: 42970-6. PMID 15262967 DOI: 10.1074/jbc.M406504200  1
2004 Chen X, Spudich JL. Five residues in the HtrI transducer membrane-proximal domain close the cytoplasmic proton-conducting channel of sensory rhodopsin I. The Journal of Biological Chemistry. 279: 42964-9. PMID 15252049 DOI: 10.1074/jbc.M406503200  1
2004 Bergo V, Amsden JJ, Spudich EN, Spudich JL, Rothschild KJ. Structural changes in the photoactive site of proteorhodopsin during the primary photoreaction. Biochemistry. 43: 9075-83. PMID 15248764 DOI: 10.1021/bi0361968  1
2004 Sineshchekov OA, Spudich JL. Light-induced intramolecular charge movements in microbial rhodopsins in intact E. coli cells. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 3: 548-54. PMID 15170484 DOI: 10.1039/b316207a  1
2004 Man-Aharonovich D, Sabehi G, Sineshchekov OA, Spudich EN, Spudich JL, Béjà O. Characterization of RS29, a blue-green proteorhodopsin variant from the Red Sea. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 3: 459-62. PMID 15122363 DOI: 10.1039/b316071h  1
2004 Govorunova EG, Jung KH, Sineshchekov OA, Spudich JL. Chlamydomonas sensory rhodopsins A and B: cellular content and role in photophobic responses. Biophysical Journal. 86: 2342-9. PMID 15041672 DOI: 10.1016/S0006-3495(04)74291-5  1
2003 Trivedi VD, Spudich JL. Photostimulation of a sensory rhodopsin II/HtrII/Tsr fusion chimera activates CheA-autophosphorylation and CheY-phosphotransfer in vitro. Biochemistry. 42: 13887-92. PMID 14636056 DOI: 10.1021/bi034399q  1
2003 Bergo V, Spudich EN, Spudich JL, Rothschild KJ. Conformational changes detected in a sensory rhodopsin II-transducer complex. The Journal of Biological Chemistry. 278: 36556-62. PMID 12821665 DOI: 10.1074/jbc.M303719200  1
2003 Wang WW, Sineshchekov OA, Spudich EN, Spudich JL. Spectroscopic and photochemical characterization of a deep ocean proteorhodopsin. The Journal of Biological Chemistry. 278: 33985-91. PMID 12821661 DOI: 10.1074/jbc.M305716200  1
2003 Man D, Wang W, Sabehi G, Aravind L, Post AF, Massana R, Spudich EN, Spudich JL, Béjà O. Diversification and spectral tuning in marine proteorhodopsins. The Embo Journal. 22: 1725-31. PMID 12682005 DOI: 10.1093/emboj/cdg183  1
2003 Jung KH, Trivedi VD, Spudich JL. Demonstration of a sensory rhodopsin in eubacteria. Molecular Microbiology. 47: 1513-22. PMID 12622809 DOI: 10.1046/j.1365-2958.2003.03395.x  1
2002 Bergo V, Spudich EN, Spudich JL, Rothschild KJ. A Fourier transform infrared study of Neurospora rhodopsin: similarities with archaeal rhodopsins. Photochemistry and Photobiology. 76: 341-9. PMID 12403457 DOI: 10.1562/0031-8655(2002)076<0341:AFTISO>2.0.CO;2  1
2002 Spudich J. Spotlight on receptor/transducer interaction Nature Structural Biology. 9: 797-799. PMID 12402035 DOI: 10.1038/nsb1102-797  1
2002 Spudich JL, Luecke H. Sensory rhodopsin II: functional insights from structure. Current Opinion in Structural Biology. 12: 540-6. PMID 12163079 DOI: 10.1016/S0959-440X(02)00359-7  1
2002 Sineshchekov OA, Jung KH, Spudich JL. Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii. Proceedings of the National Academy of Sciences of the United States of America. 99: 8689-94. PMID 12060707 DOI: 10.1073/pnas.122243399  1
2002 Dioumaev AK, Brown LS, Shih J, Spudich EN, Spudich JL, Lanyi JK. Proton transfers in the photochemical reaction cycle of proteorhodopsin. Biochemistry. 41: 5348-58. PMID 11969395 DOI: 10.1021/bi025563x  1
2002 Chen X, Spudich JL. Demonstration of 2:2 stoichiometry in the functional SRI-HtrI signaling complex in Halobacterium membranes by gene fusion analysis. Biochemistry. 41: 3891-6. PMID 11900531 DOI: 10.1021/bi015966h  1
2001 Dassarma S, Kennedy SP, Berquist B, Victor Ng W, Baliga NS, Spudich JL, Krebs MP, Eisen JA, Johnson CH, Hood L. Genomic perspective on the photobiology of Halobacterium species NRC-1, a phototrophic, phototactic, and UV-tolerant haloarchaeon. Photosynthesis Research. 70: 3-17. PMID 16228359 DOI: 10.1023/A:1013879706863  1
2001 Yang CS, Spudich JL. Light-induced structural changes occur in the transmembrane helices of the Natronobacterium pharaonis HtrII transducer. Biochemistry. 40: 14207-14. PMID 11714274 DOI: 10.1021/bi010985c  1
2001 Ren L, Martin CH, Wise KJ, Gillespie NB, Luecke H, Lanyi JK, Spudich JL, Birge RR. Molecular mechanism of spectral tuning in sensory rhodopsin II. Biochemistry. 40: 13906-14. PMID 11705380 DOI: 10.1021/bi0116487  1
2001 Jung KH, Spudich EN, Trivedi VD, Spudich JL. An archaeal photosignal-transducing module mediates phototaxis in Escherichia coli. Journal of Bacteriology. 183: 6365-71. PMID 11591681 DOI: 10.1128/JB.183.21.6365-6371.2001  1
2001 Béjà O, Spudich EN, Spudich JL, Leclerc M, DeLong EF. Proteorhodopsin phototrophy in the ocean. Nature. 411: 786-9. PMID 11459054 DOI: 10.1038/35081051  1
2001 Luecke H, Schobert B, Lanyi JK, Spudich EN, Spudich JL. Crystal structure of sensory rhodopsin II at 2.4 angstroms: insights into color tuning and transducer interaction. Science (New York, N.Y.). 293: 1499-503. PMID 11452084 DOI: 10.1126/science.1062977  1
2001 Brown LS, Dioumaev AK, Lanyi JK, Spudich EN, Spudich JL. Photochemical reaction cycle and proton transfers in Neurospora rhodopsin. The Journal of Biological Chemistry. 276: 32495-505. PMID 11435422 DOI: 10.1074/jbc.M102652200  1
2001 Kunji ER, Spudich EN, Grisshammer R, Henderson R, Spudich JL. Electron crystallographic analysis of two-dimensional crystals of sensory rhodopsin II: a 6.9 A projection structure. Journal of Molecular Biology. 308: 279-93. PMID 11327767 DOI: 10.1006/jmbi.2001.4565  1
2001 Spudich JL. Chapter 5 Color-sensitive vision by haloarchaea Comprehensive Series in Photosciences. 1: 151-178. DOI: 10.1016/S1568-461X(01)80009-0  1
2000 Swartz TE, Szundi I, Spudich JL, Bogomolni RA. New photointermediates in the two photon signaling pathway of sensory rhodopsin-I. Biochemistry. 39: 15101-9. PMID 11106488 DOI: 10.1021/bi0013290  1
2000 Spudich JL, Yang CS, Jung KH, Spudich EN. Retinylidene proteins: structures and functions from archaea to humans. Annual Review of Cell and Developmental Biology. 16: 365-92. PMID 11031241 DOI: 10.1146/annurev.cellbio.16.1.365  1
2000 Ng WV, Kennedy SP, Mahairas GG, Berquist B, Pan M, Shukla HD, Lasky SR, Baliga NS, Thorsson V, Sbrogna J, Swartzell S, Weir D, Hall J, Dahl TA, Welti R, ... ... Spudich JL, et al. Genome sequence of Halobacterium species NRC-1. Proceedings of the National Academy of Sciences of the United States of America. 97: 12176-81. PMID 11016950 DOI: 10.1073/pnas.190337797  1
2000 Béjà O, Aravind L, Koonin EV, Suzuki MT, Hadd A, Nguyen LP, Jovanovich SB, Gates CM, Feldman RA, Spudich JL, Spudich EN, DeLong EF. Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science (New York, N.Y.). 289: 1902-6. PMID 10988064 DOI: 10.1126/science.289.5486.1902  1
2000 Sasaki J, Spudich JL. Proton transport by sensory rhodopsins and its modulation by transducer-binding. Biochimica Et Biophysica Acta. 1460: 230-9. PMID 10984603 DOI: 10.1016/S0005-2728(00)00142-0  1
2000 Spudich JL. Structural biology. A chloride pump at atomic resolution. Science (New York, N.Y.). 288: 1358-9. PMID 10847850 DOI: 10.1126/science.288.5470.1358  1
2000 Kort R, Crielaard W, Spudich JL, Hellingwerf KJ. Color-sensitive motility and methanol release responses in Rhodobacter sphaeroides. Journal of Bacteriology. 182: 3017-21. PMID 10809677 DOI: 10.1128/JB.182.11.3017-3021.2000  1
2000 Bergo V, Spudich EN, Scott KL, Spudich JL, Rothschild KJ. FTIR analysis of the SII540 intermediate of sensory rhodopsin II: Asp73 is the Schiff base proton acceptor. Biochemistry. 39: 2823-30. PMID 10715101 DOI: 10.1021/bi991676d  1
1999 Bieszke JA, Spudich EN, Scott KL, Borkovich KA, Spudich JL. A eukaryotic protein, NOP-1, binds retinal to form an archaeal rhodopsin-like photochemically reactive pigment. Biochemistry. 38: 14138-45. PMID 10571987 DOI: 10.1021/bi9916170  1
1999 Jung KH, Spudich EN, Dag P, Spudich JL. Transducer-binding and transducer-mutations modulate photoactive-site-deprotonation in sensory rhodopsin I. Biochemistry. 38: 13270-4. PMID 10529200 DOI: 10.1021/bi991180w  1
1999 Sasaki J, Spudich JL. Proton circulation during the photocycle of sensory rhodopsin II. Biophysical Journal. 77: 2145-52. PMID 10512834 DOI: 10.1016/S0006-3495(99)77055-4  1
1999 Perazzona B, Spudich JL. Identification of methylation sites and effects of phototaxis stimuli on transducer methylation in Halobacterium salinarum. Journal of Bacteriology. 181: 5676-83. PMID 10482508  1
1999 Losi A, Braslavsky SE, Gärtner W, Spudich JL. Time-resolved absorption and photothermal measurements with sensory rhodopsin I from Halobacterium salinarum. Biophysical Journal. 76: 2183-91. PMID 10096912 DOI: 10.1016/S0006-3495(99)77373-X  1
1999 Zhang XN, Zhu J, Spudich JL. The specificity of interaction of archaeal transducers with their cognate sensory rhodopsins is determined by their transmembrane helices. Proceedings of the National Academy of Sciences of the United States of America. 96: 857-62. PMID 9927658 DOI: 10.1073/pnas.96.3.857  1
1998 Sasaki J, Spudich JL. The transducer protein HtrII modulates the lifetimes of sensory rhodopsin II photointermediates. Biophysical Journal. 75: 2435-40. PMID 9788938 DOI: 10.1016/S0006-3495(98)77687-8  1
1998 Spudich JL. Variations on a molecular switch: transport and sensory signalling by archaeal rhodopsins. Molecular Microbiology. 28: 1051-8. PMID 9680197 DOI: 10.1046/j.1365-2958.1998.00859.x  1
1998 Zhang XN, Spudich JL. HtrI is a dimer whose interface is sensitive to receptor photoactivation and His-166 replacements in sensory rhodopsin I. The Journal of Biological Chemistry. 273: 19722-8. PMID 9677402 DOI: 10.1074/jbc.273.31.19722  1
1998 Jung KH, Spudich JL. Suppressor mutation analysis of the sensory rhodopsin I-transducer complex: insights into the color-sensing mechanism. Journal of Bacteriology. 180: 2033-42. PMID 9555883  1
1997 Zhu J, Spudich EN, Alam M, Spudich JL. Effects of substitutions D73E, D73N, D103N and V106M on signaling and pH titration of sensory rhodopsin II. Photochemistry and Photobiology. 66: 788-91. PMID 9421965  1
1997 Zhang XN, Spudich JL. His166 is critical for active-site proton transfer and phototaxis signaling by sensory rhodopsin I. Biophysical Journal. 73: 1516-23. PMID 9284318 DOI: 10.1016/S0006-3495(97)78183-9  1
1997 Hoff WD, Jung KH, Spudich JL. Molecular mechanism of photosignaling by archaeal sensory rhodopsins Annual Review of Biophysics and Biomolecular Structure. 26: 223-258. PMID 9241419 DOI: 10.1146/annurev.biophys.26.1.223  1
1997 Spudich EN, Zhang W, Alam M, Spudich JL. Constitutive signaling by the phototaxis receptor sensory rhodopsin II from disruption of its protonated Schiff base-Asp-73 interhelical salt bridge. Proceedings of the National Academy of Sciences of the United States of America. 94: 4960-5. PMID 9144172 DOI: 10.1073/pnas.94.10.4960  1
1997 Yan B, Spudich EN, Sheves M, Steinberg G, Spudich JL. Complexation of the signal transducing protein HtrI to sensory rhodopsin I and its effect on thermodynamics of signaling state deactivation Journal of Physical Chemistry B. 101: 109-113.  1
1996 Perazzona B, Spudich EN, Spudich JL. Deletion mapping of the sites on the HtrI transducer for sensory rhodopsin I interaction Journal of Bacteriology. 178: 6475-6478. PMID 8932303  1
1996 Spudich JL, Lanyi JK. Shuttling between two protein conformations: The common mechanism for sensory transduction and ion transport Current Opinion in Cell Biology. 8: 452-457. PMID 8791445 DOI: 10.1016/S0955-0674(96)80020-2  1
1996 Jung KH, Spudich JL. Protonatable residues at the cytoplasmic end of transmembrane helix-2 in the signal transducer HtrI control photochemistry and function of sensory rhodopsin I Proceedings of the National Academy of Sciences of the United States of America. 93: 6557-6561. PMID 8692855 DOI: 10.1073/pnas.93.13.6557  1
1996 Rath P, Spudich E, Neal DD, Spudich JL, Rothschild KJ. Asp76 is the schiff base counterion and proton acceptor in the proton-translocating form of sensory rhodopsin I Biochemistry. 35: 6690-6696. PMID 8639619  1
1995 Krebs MP, Spudich EN, Spudich JL. Rapid high-yield purification and liposome reconstitution of polyhistidine-tagged sensory rhodopsin I. Protein Expression and Purification. 6: 780-8. PMID 8746630 DOI: 10.1006/prep.1995.0009  1
1995 Yan B, Spudich JL, Mazur P, Vunnam S, Derguini F, Nakanishi K. Spectral tuning in bacteriorhodopsin in the absence of counterion and coplanarization effects. The Journal of Biological Chemistry. 270: 29668-70. PMID 8530353 DOI: 10.1074/jbc.270.50.29668  1
1995 Olson KD, Zhang XN, Spudich JL. Residue replacements of buried aspartyl and related residues in sensory rhodopsin I: D201N produces inverted photo taxis signals Proceedings of the National Academy of Sciences of the United States of America. 92: 3185-3189. PMID 7724537  1
1995 Khan S, Spudich JL, McCray JA, Trentham DR. Chemotactic signal integration in bacteria. Proceedings of the National Academy of Sciences of the United States of America. 92: 9757-61. PMID 7568212 DOI: 10.1073/pnas.92.21.9757  1
1995 Spudich JL. Transducer protein HtrI controls proton movements in sensory rhodopsin I Biophysical Chemistry. 56: 165-169. DOI: 10.1016/0301-4622(95)00029-W  1
1994 Rath P, Olson KD, Spudich JL, Rothschild KJ. The schiff base counterion of bacteriorhodopsin is protonated in sensory rhodopsin I: Spectroscopic and functional characterization of the mutated proteins D76N and D76A Biochemistry. 33: 5600-5606. PMID 8180184  1
1994 Spudich JL. Protein-protein interaction converts a proton pump into a sensory receptor Cell. 79: 747-750. PMID 8001113 DOI: 10.1016/0092-8674(94)90064-7  1
1994 Yao VJ, Spudich EN, Spudich JL. Identification of distinct domains for signaling and receptor interaction of the sensory rhodopsin I transducer, HtrI Journal of Bacteriology. 176: 6931-6935. PMID 7961454  1
1994 Bogomolni RA, Stoeckenius W, Szundi I, Perozo E, Olson KD, Spudich JL. Removal of transducer HtrI allows electrogenic proton translocation by sensory rhodopsin I. Proceedings of the National Academy of Sciences of the United States of America. 91: 10188-92. PMID 7937859 DOI: 10.1073/pnas.91.21.10188  1
1994 Zacks DN, Spudich JL. Gain setting in Chlamydomonas reinhardtii: Mechanism of phototaxis and the role of the photophobic response Cell Motility and the Cytoskeleton. 29: 225-230. PMID 7895286 DOI: 10.1002/cm.970290305  1
1994 Spudich JL. New tool for spectroscopists Nature Structural Biology. 1: 495-496. PMID 7664071  1
1993 Krebs MP, Spudich EN, Khorana HG, Spudich JL. Synthesis of a gene for sensory rhodopsin I and its functional expression in Halobacterium halobium. Proceedings of the National Academy of Sciences of the United States of America. 90: 3486-90. PMID 8475097  1
1993 Yan B, Xie A, Nienhaus GU, Katsuta Y, Spudich JL. Steric constraints in the retinal binding pocket of sensory rhodopsin I Biochemistry. 32: 10224-10232. PMID 8399150  1
1993 Zacks DN, Derguini F, Nakanishi K, Spudich JL. Comparative study of phototactic and photophobic receptor chromophore properties in Chlamydomonas reinhardtii. Biophysical Journal. 65: 508-18. PMID 8369455 DOI: 10.1016/S0006-3495(93)81067-1  1
1993 Spudich EN, Spudich JL. The photochemical reactions of sensory rhodopsin I are altered by its transducer Journal of Biological Chemistry. 268: 16095-16097. PMID 8344892  1
1993 Olson KD, Spudich JL. Removal of the transducer protein from sensory rhodopsin I exposes sites of proton release and uptake during the receptor photocycle Biophysical Journal. 65: 2578-2585. PMID 8312493  1
1993 Khan S, Castellano F, Spudich JL, McCray JA, Goody RS, Reid GP, Trentham DR. Excitatory signaling in bacterial probed by caged chemoeffectors. Biophysical Journal. 65: 2368-82. PMID 8312476 DOI: 10.1016/S0006-3495(93)81317-1  1
1993 Spudich JL. Color sensing in the Archaea: A eukaryotic-like receptor coupled to a prokaryotic transducer Journal of Bacteriology. 175: 7755-7761. PMID 8253663  1
1992 Khan S, Amoyaw K, Spudich JL, Reid GP, Trentham DR. Bacterial chemoreceptor signaling probed by flash photorelease of a caged serine. Biophysical Journal. 62: 67-8. PMID 1600102 DOI: 10.1016/S0006-3495(92)81781-2  1
1992 Spudich JL, Bogomolni RA. Sensory rhodopsin I: Receptor activation and signal relay Journal of Bioenergetics and Biomembranes. 24: 193-200. PMID 1526961 DOI: 10.1007/BF00762677  1
1992 Takahashi T, Yan B, Spudich JL. Sensitivity increase in the photophobic response of Halobacterium halobium reconstituted with retinal analogs: a novel interpretation for the fluence-response relationship and a kinetic modeling Photochemistry and Photobiology. 56: 1119-1128. PMID 1492128  1
1992 Yao VJ, Spudich JL. Primary structure of an archaebacterial transducer, a methyl-accepting protein associated with sensory rhodopsin I Proceedings of the National Academy of Sciences of the United States of America. 89: 11915-11919. PMID 1465418  1
1992 Olson KD, Deval P, Spudich JL. Absorption and photochemistry of sensory rhodopsin--I: pH effects Photochemistry and Photobiology. 56: 1181-1187. PMID 1337216  1
1992 Yan B, Cline SW, Doolittle WF, Spudich JL. Transformation of a bop-hop-sop-I-sop-II-Halobacterium halobium mutant to bop+: effects of bacteriorhodopsin photoactivation on cellular proton fluxes and swimming behavior Photochemistry and Photobiology. 56: 553-561. PMID 1333616  1
1991 Bousche O, Spudich EN, Spudich JL, Rothschild KJ. Conformational changes in sensory rhodopsin I: Similarities and differences with bacteriorhodopsin, halorhodopsin, and rhodopsin Biochemistry. 30: 5395-5400. PMID 2036407  1
1991 Yan B, Nakanishi K, Spudich JL. Mechanism of activation of sensory rhodopsin I: Evidence for a steric trigger Proceedings of the National Academy of Sciences of the United States of America. 88: 9412-9416. PMID 1946353  1
1991 Yan B, Takahashi T, Johnson R, Spudich JL. Identification of signaling states of a sensory receptor by modulation of lifetimes of stimulus-induced conformations: The case of sensory rhodopsin II Biochemistry. 30: 10686-10692. PMID 1931988  1
1991 Lawson MA, Zacks DN, Derguini F, Nakanishi K, Spudich JL. Retinal analog restoration of photophobic responses in a blind Chlamydomonas reinhardtii mutant. Evidence for an archaebacterial like chromophore in a eukaryotic rhodopsin. Biophysical Journal. 60: 1490-8. PMID 1777569 DOI: 10.1016/S0006-3495(91)82184-1  1
1991 Yan B, Spudich JL. Evidence that the repellent receptor form of sensory rhodopsin I is an attractant signaling state Photochemistry and Photobiology. 54: 1023-1026. PMID 1775527  1
1990 Yan B, Takahashi T, Johnson R, Derguini F, Nakanishi K, Spudich JL. All-trans/13-cis isomerization of retinal is required for phototaxis signaling by sensory rhodopsins in Halobacterium halobium. Biophysical Journal. 57: 807-14. PMID 2344465 DOI: 10.1016/S0006-3495(90)82600-X  1
1990 Sundberg SA, Alam M, Lebert M, Spudich JL, Oesterhelt D, Hazelbauer GL. Characterization of Halobacterium halobium mutants defective in taxis Journal of Bacteriology. 172: 2328-2335. PMID 2332402  1
1990 Yan B, Takahashi T, McCain DA, Rao VJ, Nakanishi K, Spudich JL. Effects of modifications of the retinal β-ionone ring on archaebacterial sensory rhodopsin I Biophysical Journal. 57: 477-483. PMID 2306497  1
1990 Takahashi T, Yan B, Mazur P, Derguini F, Nakanishi K, Spudich JL. Color regulation in the archaebacterial phototaxis receptor phoborhodopsin (sensory rhodopsin II). Biochemistry. 29: 8467-74. PMID 2252905  1
1989 Spudich EN, Takahashi T, Spudich JL. Sensory rhodopsins I and II modulate a methylation/demethylation system in Halobacterium halobium phototaxis Proceedings of the National Academy of Sciences of the United States of America. 86: 7746-7750. PMID 2682623  1
1988 Spudich EN, Hasselbacher CA, Spudich JL. Methyl-accepting protein associated with bacterial sensory rhodopsin I Journal of Bacteriology. 170: 4280-4285. PMID 3410829  1
1988 Hasselbacher CA, Spudich JL, Dewey TG. Circular dichroism of halorhodopsin: Comparison with bacteriorhodopsin and sensory rhodopsin I Biochemistry®. 27: 2540-2546. PMID 3382638  1
1988 Rothschild KJ, Bousché O, Braiman MS, Hasselbacher CA, Spudich JL. Fourier transform infrared study of the halorhodopsin chloride pump Biochemistry®. 27: 2420-2424. PMID 3382631  1
1988 Spudich JL, Bogomolni RA. Sensory rhodopsins of halobacteria Annual Review of Biophysics and Biophysical Chemistry. 17: 193-215. PMID 3293584  1
1988 Manor D, Hasselbacher CA, Spudich JL. Membrane potential modulates photocycling rates of bacterial rhodopsins Biochemistry. 27: 5843-5848. PMID 3191096  1
1987 McCain DA, Amici LA, Spudich JL. Kinetically resolved states of the Halobacterium halobium flagellar motor switch and modulation of the switch by sensory rhodopsin I Journal of Bacteriology. 169: 4750-4758. PMID 3654583  1
1987 Bogomolni RA, Spudich JL. The photochemical reactions of bacterial sensory rhodopsin-I. Flash photolysis study in the one microsecond to eight second time window Biophysical Journal. 52: 1071-1075. PMID 3427196  1
1986 Sundberg SA, Alam M, Spudich JL. Excitation signal processing times in Halobacterium halobium phototaxis Biophysical Journal. 50: 895-900. PMID 3790692  1
1986 Spudich EN, Sundberg SA, Manor D, Spudich JL. Properties of a second sensory receptor protein in Halobacterium halobium phototaxis Proteins. 1: 239-246. PMID 3449857  1
1986 Spudich JL, McCain DA, Nakanishi K, Okabe M, Shimizu N, Rodman H, Honig B, Bogomolni RA. Chromophore/protein interaction in bacterial sensory rhodopsin and bacteriorhodopsin Biophysical Journal. 49: 479-483. PMID 2937462  1
1985 Sundberg SA, Bogomolni RA, Spudich JL. Selection and properties of phototaxis-deficient mutants of Halobacterium halobium Journal of Bacteriology. 164: 282-287. PMID 4044522  1
1985 Spudich EN, Spudich JL. Biochemical characterization of halorhodopsin in native membranes Journal of Biological Chemistry. 260: 1208-1212. PMID 3881422  1
1984 Spudich JL. Genetic demonstration of a sensory rhodopsin in bacteria Progress in Clinical and Biological Research. 164: 221-229. PMID 6522400  1
1984 Spudich JL, Bogomolni RA. Mechanism of colour discrimination by a bacterial sensory rhodopsin Nature. 312: 509-513. PMID 6504161 DOI: 10.1038/312509a0  1
1984 Ehrlich BE, Schen CR, Spudich JL. Bacterial rhodopsins monitored with fluorescent dyes in vesicles and in vivo. The Journal of Membrane Biology. 82: 89-94. PMID 6502700 DOI: 10.1007/BF01870735  1
1983 Krupinski J, Spudich JL, Hammes GG. Phase-lifetime spectrophotometry of membranes from ion flux mutants of Halobacterium halobium. The Journal of Biological Chemistry. 258: 7964-7. PMID 6863274  1
1983 Spudich EN, Bogomolni RA, Spudich JL. Genetic and biochemical resolution of the chromophoric polypeptide of halorhodopsin Biochemical and Biophysical Research Communications. 112: 332-338. PMID 6838616 DOI: 10.1016/0006-291X(83)91835-1  1
1983 Spudich JL, Bogomolni RA. Spectroscopic discrimination of the three rhodopsinlike pigments in Halobacterium halobium membranes Biophysical Journal. 43: 243-246. PMID 6616008  1
1982 Bogomolni RA, Spudich JL. Identification of a third rhodopsin-like pigment in phototactic Halobacterium halobium Proceedings of the National Academy of Sciences of the United States of America. 79: 6250-6254. PMID 6959114  1
1982 Spudich EN, Spudich JL. Control of transmembrane ion flux to select halorhodopsin-deficient and other energy-transduction mutants of Halobacterium halobium Proceedings of the National Academy of Sciences of the United States of America. 79: 4308-4312. PMID 6289299  1
1982 Spudich EN, Spudich JL. [26] Measurement of light-regulated phosphoproteins of Halobacterium halobium Methods in Enzymology. 88: 213-216. DOI: 10.1016/0076-6879(82)88029-4  1
1981 Spudich EN, Spudich JL. Photosensitive phosphoproteins in halobacteria: Regulatory coupling of transmembrane proton flux and protein dephosphorylation Journal of Cell Biology. 91: 895-900. PMID 6276413  1
1980 Spudich JL, Stoeckenius W. Light-regulated retinal-dependent reversible phosphorylation of Halobacterium proteins. The Journal of Biological Chemistry. 255: 5501-3. PMID 7380823  1
1980 Spudich JL, Sager R. Regulation of the Chlamydomonas cell cycle by light and dark. The Journal of Cell Biology. 85: 136-45. PMID 6767730  1
1979 Spudich JL, Koshland DE. Specific inactivator of flagellar reversal in Salmonella typhimurium Journal of Bacteriology. 139: 442-447. PMID 378971  1
1979 Spudich JL, Stoeckenius W. Photosensory and chemosensory behavior of Halobacterium halobium Photobiochemistry and Photobiophysics. 1: 43-53.  1
1976 Spudich JL, Koshland DE. Non-genetic individuality: Chance in the single cell Nature. 262: 467-471. PMID 958399 DOI: 10.1038/262467a0  1
1975 Spudich JL, Koshland DE. Quantitation of the sensory response in bacterial chemotaxis Proceedings of the National Academy of Sciences of the United States of America. 72: 710-713. PMID 1091931  1
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