Samrat Mukhopadhyay - Publications

Affiliations: 
2008- Indian Institute of Science Education and Research (IISER) Mohali 
Area:
Intrinsically Disordered Proteins: Phase Separation and Amyloid Aggregation
Website:
http://www.iisermohali.ac.in/faculty/dcs/mukhopadhyay

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Majumdar A, Das D, Madhu P, Avni A, Mukhopadhyay S. Excitation Energy Migration Unveils Fuzzy Interfaces within the Amyloid Architecture. Biophysical Journal. PMID 32402242 DOI: 10.1016/J.Bpj.2020.04.015  0.48
2020 Bhasne K, Jain N, Karnawat R, Arya S, Majumdar A, Singh A, Mukhopadhyay S. Discerning Dynamic Signatures of Membrane-Bound α-Synuclein Using Site-Specific Fluorescence Depolarization Kinetics. The Journal of Physical Chemistry. B. PMID 31917569 DOI: 10.1021/Acs.Jpcb.9B09118  0.92
2019 Dogra P, Joshi A, Majumdar A, Mukhopadhyay S. Intermolecular charge-transfer modulates liquid-liquid phase separation and liquid-to-solid maturation of an intrinsically disordered pH-responsive domain. Journal of the American Chemical Society. PMID 31783713 DOI: 10.1021/Jacs.9B10892  0.48
2019 Avni A, Swasthi HM, Majumdar A, Mukhopadhyay S. Intrinsically disordered proteins in the formation of functional amyloids from bacteria to humans. Progress in Molecular Biology and Translational Science. 166: 109-143. PMID 31521230 DOI: 10.1016/Bs.Pmbts.2019.05.005  1
2019 Majumdar A, Dogra P, Maity S, Mukhopadhyay S. Liquid-Liquid Phase Separation Is Driven by Large-Scale Conformational Unwinding and Fluctuations of Intrinsically Disordered Protein Molecules. The Journal of Physical Chemistry Letters. 3929-3936. PMID 31260322 DOI: 10.1021/Acs.Jpclett.9B01731  0.48
2019 Majumdar A, Das D, Dogra P, Maity S, Mukhopadhyay S. Proximity Rulers in Amyloids and Liquid Droplets of Intrinsically Disordered Proteins Biophysical Journal. 116. DOI: 10.1016/J.Bpj.2018.11.190  0.48
2018 Majumdar A, Mukhopadhyay S. Fluorescence Depolarization Kinetics to Study the Conformational Preference, Structural Plasticity, Binding, and Assembly of Intrinsically Disordered Proteins. Methods in Enzymology. 611: 347-381. PMID 30471693 DOI: 10.1016/Bs.Mie.2018.09.031  0.48
2018 Swasthi HM, Bhasne K, Mahapatra S, Mukhopadhyay S. Human Fibrinogen Inhibits Amyloid Assembly of Biofilm-Forming CsgA. Biochemistry. PMID 30338995 DOI: 10.1021/Acs.Biochem.8B00841  1
2018 Bhasne K, Mukhopadhyay S. Formation of Heterotypic Amyloids: α-Synuclein in Co-Aggregation. Proteomics. e1800059. PMID 30216674 DOI: 10.1002/pmic.201800059  0.84
2018 Arya S, Singh AK, Bhasne K, Dogra P, Datta A, Das P, Mukhopadhyay S. Femtosecond Hydration Map of Intrinsically Disordered α-Synuclein. Biophysical Journal. 114: 2540-2551. PMID 29874605 DOI: 10.1016/J.Bpj.2018.04.028  0.92
2018 Bhasne K, Sebastian S, Jain N, Mukhopadhyay S. Synergistic Amyloid Switch Triggered by Early Heterotypic Oligomerization of Intrinsically Disordered α-Synuclein and Tau. Journal of Molecular Biology. PMID 29704492 DOI: 10.1016/J.Jmb.2018.04.020  0.84
2017 Swasthi HM, Mukhopadhyay S. Electrostatic lipid-protein interactions sequester the curli amyloid fold on the lipopolysaccharide membrane surface. The Journal of Biological Chemistry. PMID 29021250 DOI: 10.1074/Jbc.M117.815522  1
2017 Narang D, Swasthi HM, Mahapatra S, Mukhopadhyay S. Site-Specific Fluorescence Depolarization Kinetics Distinguishes the Amyloid Folds Responsible for Distinct Yeast Prion Strains. The Journal of Physical Chemistry. B. PMID 28840728 DOI: 10.1021/Acs.Jpcb.7B05550  1
2016 Dogra P, Bhattacharya M, Mukhopadhyay S. A pH-Responsive Mechanistic Switch Regulates the Formation of Dendritic and Fibrillar Nanostructures of a Functional Amyloid. The Journal of Physical Chemistry. B. PMID 28005369 DOI: 10.1021/Acs.Jpcb.6B11281  0.64
2016 Arya S, Singh AK, Khan T, Bhattacharya M, Datta A, Mukhopadhyay S. Water Rearrangements upon Disorder-to-Order Amyloid Transition. The Journal of Physical Chemistry Letters. PMID 27689394 DOI: 10.1021/Acs.Jpclett.6B02088  0.92
2016 Jain N, Narang D, Bhasne K, Dalal V, Arya S, Bhattacharya M, Mukhopadhyay S. Direct Observation of the Intrinsic Backbone Torsional Mobility of Disordered Proteins. Biophysical Journal. 111: 768-74. PMID 27558720 DOI: 10.1016/J.Bpj.2016.07.023  0.92
2016 Narang D, Singh A, Swasthi HM, Mukhopadhyay S. Characterization of Salt-Induced Oligomerization of Human β2-Microglobulin at Low pH. The Journal of Physical Chemistry. B. PMID 27467899 DOI: 10.1021/Acs.Jpcb.6B05619  1
2016 Dalal V, Arya S, Mukhopadhyay S. Confined Water in Amyloid-Competent Oligomers of the Prion Protein. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 27253720 DOI: 10.1002/Cphc.201600440  0.96
2016 Narang D, Singh A, Mukhopadhyay S. Stepwise unfolding of human β2-microglobulin into a disordered amyloidogenic precursor at low pH. European Biophysics Journal : Ebj. PMID 27225299 DOI: 10.1007/S00249-016-1138-X  0.56
2015 Dalal V, Arya S, Bhattacharya M, Mukhopadhyay S. Conformational Switching and Nanoscale Assembly of Human Prion Protein into Polymorphic Amyloids via Structurally-Labile Oligomers. Biochemistry. PMID 26645611 DOI: 10.1021/Acs.Biochem.5B01110  0.96
2015 Arya S, Kumari A, Dalal V, Bhattacharya M, Mukhopadhyay S. Appearance of annular ring-like intermediates during amyloid fibril formation from human serum albumin. Physical Chemistry Chemical Physics : Pccp. 17: 22862-71. PMID 26264974 DOI: 10.1039/C5Cp03782D  0.96
2015 Banerjee D, Chattopadhyay SK, Chatterjee K, Tuli S, Jain N, Goyal I, Mukhopadhyay S. Non-destructive testing of jute-polypropylene composite using frequency-modulated thermal wave imaging Journal of Thermoplastic Composite Materials. 28: 548-557. DOI: 10.1177/0892705713486134  0.36
2014 Arya S, Mukhopadhyay S. Ordered water within the collapsed globules of an amyloidogenic intrinsically disordered protein. The Journal of Physical Chemistry. B. 118: 9191-8. PMID 25035108 DOI: 10.1021/Jp504076A  0.92
2014 Bhattacharya M, Mukhopadhyay S. Nanophotonics of protein amyloids Nanophotonics. 3: 51-59. DOI: 10.1515/Nanoph-2013-0045  0.96
2014 Bhattacharya M, Jain N, Dogra P, Dalal V, Narang D, Sharma PK, Samai S, Mukhopadhyay S. Nanoscale Assembly of Proteins into Amyloid Oligomers, Pores and Fibrils Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.3781  0.84
2013 Bhattacharya M, Jain N, Dogra P, Samai S, Mukhopadhyay S. Nanoscopic Amyloid Pores Formed via Stepwise Protein Assembly. The Journal of Physical Chemistry Letters. 4: 480-5. PMID 26281744 DOI: 10.1021/Jz3019786  0.96
2013 Jain N, Bhasne K, Hemaswasthi M, Mukhopadhyay S. Structural and dynamical insights into the membrane-bound α-synuclein. Plos One. 8: e83752. PMID 24376740 DOI: 10.1371/Journal.Pone.0083752  0.84
2013 Narang D, Sharma PK, Mukhopadhyay S. Dynamics and dimension of an amyloidogenic disordered state of human β(2)-microglobulin. European Biophysics Journal : Ebj. 42: 767-76. PMID 23974249 DOI: 10.1007/S00249-013-0923-Z  0.56
2012 Dalal V, Bhattacharya M, Narang D, Sharma PK, Mukhopadhyay S. Nanoscale Fluorescence Imaging of Single Amyloid Fibrils. The Journal of Physical Chemistry Letters. 3: 1783-7. PMID 26291859 DOI: 10.1021/Jz300687F  0.96
2012 Krishnan R, Goodman JL, Mukhopadhyay S, Pacheco CD, Lemke EA, Deniz AA, Lindquist S. Conserved features of intermediates in amyloid assembly determine their benign or toxic states. Proceedings of the National Academy of Sciences of the United States of America. 109: 11172-7. PMID 22745165 DOI: 10.1073/Pnas.1209527109  0.96
2012 Bhattacharya M, Mukhopadhyay S. Structural and dynamical insights into the molten-globule form of ovalbumin. The Journal of Physical Chemistry. B. 116: 520-31. PMID 22097968 DOI: 10.1021/Jp208416D  0.64
2012 Mukhopadhyay S, Jain N, Bhattacharya M. Polypeptide Chain Collapse of Amyloidogenic Intrinsically Disordered Proteins Biophysical Journal. 102: 6-9. DOI: 10.1016/J.Bpj.2011.11.3428  0.84
2012 Bhattacharya M, Jain N, Dogra P, Samai S, Patil S, Mukhopadhyay S. Biophysical Studies on Protein Aggregation and Amyloid Fibril Formation Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.2425  0.84
2011 Jain N, Bhattacharya M, Mukhopadhyay S. Chain collapse of an amyloidogenic intrinsically disordered protein. Biophysical Journal. 101: 1720-9. PMID 21961598 DOI: 10.1016/J.Bpj.2011.08.024  0.84
2011 Bhattacharya M, Jain N, Mukhopadhyay S. Insights into the mechanism of aggregation and fibril formation from bovine serum albumin. The Journal of Physical Chemistry. B. 115: 4195-205. PMID 21417250 DOI: 10.1021/Jp111528C  0.84
2011 Bhattacharya M, Jain N, Bhasne K, Kumari V, Mukhopadhyay S. pH-Induced conformational isomerization of bovine serum albumin studied by extrinsic and intrinsic protein fluorescence. Journal of Fluorescence. 21: 1083-90. PMID 21128099 DOI: 10.1007/S10895-010-0781-3  0.84
2011 Jain N, Bhattacharya M, Mukhopadhyay S. Kinetics of surfactant-induced aggregation of lysozyme studied by fluorescence spectroscopy. Journal of Fluorescence. 21: 615-25. PMID 20953821 DOI: 10.1007/S10895-010-0749-3  0.84
2010 Majumdar A, Mukhopadhyay S, Yadav R. Thermal properties of knitted fabrics made from cotton and regenerated bamboo cellulosic fibres International Journal of Thermal Sciences. 49: 2042-2048. DOI: 10.1016/J.Ijthermalsci.2010.05.017  0.48
2008 Wang H, Duennwald ML, Roberts BE, Rozeboom LM, Zhang YL, Steele AD, Krishnan R, Su LJ, Griffin D, Mukhopadhyay S, Hennessy EJ, Weigele P, Blanchard BJ, King J, Deniz AA, et al. Direct and selective elimination of specific prions and amyloids by 4,5-dianilinophthalimide and analogs. Proceedings of the National Academy of Sciences of the United States of America. 105: 7159-64. PMID 18480256 DOI: 10.1073/Pnas.0801934105  1
2008 Deniz AA, Mukhopadhyay S, Lemke EA. Single-molecule biophysics: at the interface of biology, physics and chemistry. Journal of the Royal Society, Interface / the Royal Society. 5: 15-45. PMID 17519204 DOI: 10.1098/Rsif.2007.1021  1
2007 Mukhopadhyay S, Deniz AA. Fluorescence from diffusing single molecules illuminates biomolecular structure and dynamics. Journal of Fluorescence. 17: 775-83. PMID 17641956 DOI: 10.1007/S10895-007-0214-0  1
2007 Mukhopadhyay S, Krishnan R, Lemke EA, Lindquist S, Deniz AA. A natively unfolded yeast prion monomer adopts an ensemble of collapsed and rapidly fluctuating structures. Proceedings of the National Academy of Sciences of the United States of America. 104: 2649-54. PMID 17299036 DOI: 10.1073/Pnas.0611503104  1
2006 Mukhopadhyay S, Nayak PK, Udgaonkar JB, Krishnamoorthy G. Characterization of the formation of amyloid protofibrils from barstar by mapping residue-specific fluorescence dynamics. Journal of Molecular Biology. 358: 935-42. PMID 16546212 DOI: 10.1016/J.Jmb.2006.02.006  0.96
2004 Mukhopadhyay S, Maitra U, Ira I, Krishnamoorthy G, Schmidt J, Talmon Y. Structure and dynamics of a molecular hydrogel derived from a tripodal cholamide. Journal of the American Chemical Society. 126: 15905-14. PMID 15571416 DOI: 10.1021/Ja046788T  0.96
2004 Mukhopadhyay S, Maitra U. Facile synthesis, aggregation behavior, and cholesterol solubilization ability of avicholic acid. Organic Letters. 6: 31-4. PMID 14703343 DOI: 10.1021/Ol036073F  0.96
2003 Gundiah G, Mukhopadhyay S, Tumkurkar UG, Govindaraj A, Maitra U, Rao CNR. Hydrogel route to nanotubes of metal oxides and sulfates Journal of Materials Chemistry. 13: 2118-2122. DOI: 10.1039/B304007K  0.96
2003 Mukhopadhyay S, Ira, Krishnamoorthy G, Maitra U. Dynamics of bound dyes in a nonpolymeric aqueous gel derived from a tripodal bile salt Journal of Physical Chemistry B. 107: 2189-2192. DOI: 10.1021/Jp027079+  0.96
2001 Maitra U, Mukhopadhyay S, Sarkar A, Rao P, Indi SS. Hydrophobic Pockets in a Nonpolymeric Aqueous Gel: Observation of such a Gelation Process by Color Change. Angewandte Chemie (International Ed. in English). 40: 2281-2283. PMID 29711840 DOI: 10.1002/1521-3773(20010618)40:12<2281::Aid-Anie2281>3.0.Co;2-L  0.96
2001 Maitra U, Mukhopadhyay S, Sarkar A, Rao P, Indi SS. Hydrophobic Pockets in a Nonpolymeric Aqueous Gel: Observation of such a Gelation Process by Color Change We thank the Jawaharlal Nehru Center for Advanced Scientific Research (Bangalore), and Mitokor, Inc. (San Diego) for supporting this work through unrestricted research grants. Angewandte Chemie (International Ed. in English). 40: 2281-2283. PMID 11433494 DOI: 10.1002/1521-3773(20010618)40:12<2281::AID-ANIE2281>3.0.CO;2-L  0.96
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