Michael Ledbetter - Related publications

Affiliations: 
2014- Scripps Research Institute, La Jolla, La Jolla, CA, United States 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Guo Y, Tang J, Yao C, Yang D. Multimodules integrated functional DNA nanomaterials for intelligent drug delivery. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. e1753. PMID 34463046 DOI: 10.1002/wnan.1753   
2021 Zhang J, Ghadermarzi S, Katuwawala A, Kurgan L. DNAgenie: accurate prediction of DNA-type-specific binding residues in protein sequences. Briefings in Bioinformatics. PMID 34415020 DOI: 10.1093/bib/bbab336   
2021 Pausch P, Soczek KM, Herbst DA, Tsuchida CA, Al-Shayeb B, Banfield JF, Nogales E, Doudna JA. DNA interference states of the hypercompact CRISPR-CasΦ effector. Nature Structural & Molecular Biology. 28: 652-661. PMID 34381246 DOI: 10.1038/s41594-021-00632-3   
2021 Dai Y, Yuan BF, Feng YQ. Quantification and mapping of DNA modifications. Rsc Chemical Biology. 2: 1096-1114. PMID 34458826 DOI: 10.1039/d1cb00022e   
2021 Nano A, Furst AL, Hill MG, Barton JK. DNA Electrochemistry: Charge-Transport Pathways through DNA Films on Gold. Journal of the American Chemical Society. PMID 34309382 DOI: 10.1021/jacs.1c04713   
2021 Nano A, Furst AL, Hill MG, Barton JK. DNA Electrochemistry: Charge-Transport Pathways through DNA Films on Gold. Journal of the American Chemical Society. PMID 34309382 DOI: 10.1021/jacs.1c04713   
2021 Wang H, Xu S. Something old, something new, a DNA preparation procedure for long read genomic sequencing. Genome. PMID 34314646 DOI: 10.1139/gen-2021-0029   
2021 Wang H, Xu S. Something old, something new, a DNA preparation procedure for long read genomic sequencing. Genome. PMID 34314646 DOI: 10.1139/gen-2021-0029   
2021 Tse DH, Becker NA, Young RT, Olson WK, Peters JP, Schwab TL, Clark KJ, Maher LJ. Designed architectural proteins that tune DNA looping in bacteria. Nucleic Acids Research. PMID 34478548 DOI: 10.1093/nar/gkab759   
2021 Wang GA, Xu J, Traynor SM, Chen H, Eljabu F, Wu X, Yan H, Li F. DNA Balance for Native Characterization of Chemically Modified DNA. Journal of the American Chemical Society. PMID 34404208 DOI: 10.1021/jacs.1c05236   
2021 Dai Z, Li J, Lin Y, Wang Z, Huang Y. Facile Construction of a Solely-DNA-Based System for Targeted Delivery of Nucleic Acids. Nanomaterials (Basel, Switzerland). 11. PMID 34443796 DOI: 10.3390/nano11081967   
2021 Hu W, Wang Y, Yang B, Lin C, Yu H, Liu G, Deng Z, Ou HY, He X. Bacterial YedK represses plasmid DNA replication and transformation through its DNA single-strand binding activity. Microbiological Research. 252: 126852. PMID 34454309 DOI: 10.1016/j.micres.2021.126852   
2021 Green MR, Sambrook J. A Guide to Cloning the Products of Polymerase Chain Reactions. Cold Spring Harbor Protocols. 2021: pdb.top101345. PMID 34470865 DOI: 10.1101/pdb.top101345   
2021 Backer AS, King GA, Biebricher AS, Shepherd JW, Noy A, Leake MC, Heller I, Wuite GJL, Peterman EJG. Elucidating the Role of Topological Constraint on the Structure of Overstretched DNA Using Fluorescence Polarization Microscopy. The Journal of Physical Chemistry. B. PMID 34309392 DOI: 10.1021/acs.jpcb.1c02708   
2021 Backer AS, King GA, Biebricher AS, Shepherd JW, Noy A, Leake MC, Heller I, Wuite GJL, Peterman EJG. Elucidating the Role of Topological Constraint on the Structure of Overstretched DNA Using Fluorescence Polarization Microscopy. The Journal of Physical Chemistry. B. PMID 34309392 DOI: 10.1021/acs.jpcb.1c02708   
2021 Favalli N, Bassi G, Bianchi D, Scheuermann J, Neri D. Large screening of DNA-compatible reaction conditions for Suzuki and Sonogashira cross-coupling reactions and for reverse amide bond formation. Bioorganic & Medicinal Chemistry. 41: 116206. PMID 34038862 DOI: 10.1016/j.bmc.2021.116206   
2021 Zheng LL, Li JZ, Li YX, Gao JB, Dong JX, Gao ZF. pH-Responsive DNA Motif: From Rational Design to Analytical Applications. Frontiers in Chemistry. 9: 732770. PMID 34458239 DOI: 10.3389/fchem.2021.732770   
2021 Brugger C, Deaconescu AM. A Gel-Based Assay for Probing Protein Translocation on dsDNA. Bio-Protocol. 11: e4094. PMID 34395731 DOI: 10.21769/BioProtoc.4094   
2021 Rahmat RA, Humphries MA, Linacre AMT, Malik A, Saedon NA, Austin JJ. Freeze-drying improves DNA yield from teeth. Forensic Science International. 326: 110938. PMID 34343942 DOI: 10.1016/j.forsciint.2021.110938   
2021 Kabza AM, Kundu N, Zhong W, Sczepanski JT. Integration of chemically modified nucleotides with DNA strand displacement reactions for applications in living systems. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. e1743. PMID 34328690 DOI: 10.1002/wnan.1743   
2021 Berger M, Wortmann L, Buchgraber P, Lücking U, Zitzmann-Kolbe S, Wengner AM, Bader B, Bömer U, Briem H, Eis K, Rehwinkel H, Bartels F, Moosmayer D, Eberspächer U, Lienau P, et al. BAY-8400: A Novel Potent and Selective DNA-PK Inhibitor which Shows Synergistic Efficacy in Combination with Targeted Alpha Therapies. Journal of Medicinal Chemistry. PMID 34428039 DOI: 10.1021/acs.jmedchem.1c00762   
2021 Khalil I, Hashem A, Nath AR, Muhd Julkapli N, Yehye WA, Basirun WJ. DNA/Nano based advanced genetic detection tools for authentication of species: Strategies, prospects and limitations. Molecular and Cellular Probes. 59: 101758. PMID 34252563 DOI: 10.1016/j.mcp.2021.101758   
2021 Branzei D, Szakal B. DNA helicases in homologous recombination repair. Current Opinion in Genetics & Development. 71: 27-33. PMID 34271541 DOI: 10.1016/j.gde.2021.06.009   
2021 Schaudy E, Lietard J, Somoza MM. Sequence Preference and Initiator Promiscuity for DNA Synthesis by Terminal Deoxynucleotidyl Transferase. Acs Synthetic Biology. 10: 1750-1760. PMID 34156829 DOI: 10.1021/acssynbio.1c00142   
2021 Ge J, Ngo LP, Kaushal S, Tay IJ, Thadhani E, Kay JE, Mazzucato P, Chow DN, Fessler JL, Weingeist DM, Sobol RW, Samson LD, Floyd SR, Engelward BP. CometChip enables parallel analysis of multiple DNA repair activities. Dna Repair. 106: 103176. PMID 34365116 DOI: 10.1016/j.dnarep.2021.103176   
2021 Polleys EJ, Freudenreich CH. Homologous recombination within repetitive DNA. Current Opinion in Genetics & Development. 71: 143-153. PMID 34464817 DOI: 10.1016/j.gde.2021.08.005   
2021 Ferraz RAC, Lopes ALG, da Silva JAF, Moreira DFV, Ferreira MJN, de Almeida Coimbra SV. DNA-protein interaction studies: a historical and comparative analysis. Plant Methods. 17: 82. PMID 34301293 DOI: 10.1186/s13007-021-00780-z   
2021 Ferraz RAC, Lopes ALG, da Silva JAF, Moreira DFV, Ferreira MJN, de Almeida Coimbra SV. DNA-protein interaction studies: a historical and comparative analysis. Plant Methods. 17: 82. PMID 34301293 DOI: 10.1186/s13007-021-00780-z   
2021 Piett CG, Pecen TJ, Laverty DJ, Nagel ZD. Large-scale preparation of fluorescence multiplex host cell reactivation (FM-HCR) reporters. Nature Protocols. PMID 34363069 DOI: 10.1038/s41596-021-00577-3   
2021 Wong KL, Liu J. Factors and methods to modulate DNA hybridization kinetics. Biotechnology Journal. e2000338. PMID 34411451 DOI: 10.1002/biot.202000338   
2021 Spencer DM, Reyna AG, Pisetsky DS. The Binding of Monoclonal and Polyclonal Anti-Z-DNA Antibodies to DNA of Various Species Origin. International Journal of Molecular Sciences. 22. PMID 34445637 DOI: 10.3390/ijms22168931   
2021 Lv Z, Zhu Y, Li F. DNA Functional Nanomaterials for Controlled Delivery of Nucleic Acid-Based Drugs. Frontiers in Bioengineering and Biotechnology. 9: 720291. PMID 34490226 DOI: 10.3389/fbioe.2021.720291   
2021 Gao X, Hong Y, Ye F, Inman JT, Wang MD. Torsional Stiffness of Extended and Plectonemic DNA. Physical Review Letters. 127: 028101. PMID 34296898 DOI: 10.1103/PhysRevLett.127.028101   
2021 Puliatti L, Handt O, Taylor D. The level of DNA an individual transfers to untouched items in their immediate surroundings. Forensic Science International. Genetics. 54: 102561. PMID 34303991 DOI: 10.1016/j.fsigen.2021.102561   
2021 Kropp HM, Ludmann S, Diederichs K, Betz K, Marx A. Structural Basis for The Recognition of Deaminated Nucleobases by An Archaeal DNA Polymerase. Chembiochem : a European Journal of Chemical Biology. PMID 34486208 DOI: 10.1002/cbic.202100306   
2021 Sarkar S, Dey U, Khohliwe TB, Yella VR, Kumar A. Analysis of nucleoid-associated protein-binding regions reveals DNA structural features influencing genome organization in Mycobacterium tuberculosis. Febs Letters. PMID 34387867 DOI: 10.1002/1873-3468.14178   
2021 Dhingra N, Zhao X. Advances in SUMO-based regulation of homologous recombination. Current Opinion in Genetics & Development. 71: 114-119. PMID 34333341 DOI: 10.1016/j.gde.2021.07.007   
2021 Luchian T, Mereuta L, Park Y, Asandei A, Schiopu I. Single-molecule, hybridization-based strategies for short nucleic acids detection and recognition with nanopores. Proteomics. e2100046. PMID 34275186 DOI: 10.1002/pmic.202100046   
2021 Hellmeier J, Platzer R, Mühlgrabner V, Schneider MC, Kurz E, Schütz GJ, Huppa JB, Sevcsik E. Strategies for the Site-Specific Decoration of DNA Origami Nanostructures with Functionally Intact Proteins. Acs Nano. PMID 34463486 DOI: 10.1021/acsnano.1c05411   
2021 Lal PB, Wells F, Myers KS, Banerjee R, Guss AM, Kiley PJ. Improving mobilization of foreign DNA into ZM4 by removal of multiple restriction systems. Applied and Environmental Microbiology. AEM0080821. PMID 34288704 DOI: 10.1128/AEM.00808-21   
2021 Jia Z, Tu K, Xu Q, Gao W, Liu C, Fang B, Zhang M. A novel disease-associated nucleic acid sensing platform based on split DNA-scaffolded sliver nanocluster. Analytica Chimica Acta. 1175: 338734. PMID 34330446 DOI: 10.1016/j.aca.2021.338734   
2021 Fujita T, Nagata S, Fujii H. Protein or ribonucleoprotein-mediated blocking of recombinase polymerase amplification enables the discrimination of nucleotide and epigenetic differences between cell populations. Communications Biology. 4: 988. PMID 34413466 DOI: 10.1038/s42003-021-02503-5   
2021 Lin SN, Dame RT, Wuite GJL. Direct visualization of the effect of DNA structure and ionic conditions on HU-DNA interactions. Scientific Reports. 11: 18492. PMID 34531428 DOI: 10.1038/s41598-021-97763-w   
2021 Kang K, Ma Y, Sadakane K. Direct visualization of local activities of long DNA strands via image-time correlation. European Biophysics Journal : Ebj. PMID 34499211 DOI: 10.1007/s00249-021-01570-0   
2021 Soda N, Gonzaga ZJ, Pannu AS, Kashaninejad N, Kline R, Salomon C, Nguyen NT, Sonar P, Rehm BHA, Shiddiky MJA. Electrochemical Detection of Global DNA Methylation Using Biologically Assembled Polymer Beads. Cancers. 13. PMID 34359688 DOI: 10.3390/cancers13153787   
2021 Yoshua SB, Watson GD, Howard JAL, Velasco-Berrelleza V, Leake MC, Noy A. Integration host factor bends and bridges DNA in a multiplicity of binding modes with varying specificity. Nucleic Acids Research. PMID 34352078 DOI: 10.1093/nar/gkab641   
2021 Xiaoru L, Ling G. Combinatorial constraint coding based on the EORS algorithm in DNA storage. Plos One. 16: e0255376. PMID 34324571 DOI: 10.1371/journal.pone.0255376   
2021 Bai L, Yang G, Qin Z, Lyu J, Wang Y, Feng J, Liu M, Gong T, Li X, Li Z, Li J, Qin J, Yang W, Ding C. Proteome-Wide Profiling of Readers for DNA Modification. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2101426. PMID 34351703 DOI: 10.1002/advs.202101426   
2021 Marín DV, Castillo DK, López-Lavalle LAB, Chalarca JR, Pérez CR. An optimized high-quality DNA isolation protocol for J. E. smith (Lepidoptera: Noctuidae). Methodsx. 8: 101255. PMID 34434778 DOI: 10.1016/j.mex.2021.101255   
2021 Zhao F, Kim W, Gao H, Liu C, Zhang Y, Chen Y, Deng M, Zhou Q, Huang J, Hu Q, Chen SH, Nowsheen S, Kloeber JA, Qin B, Yin P, et al. ASTE1 promotes shieldin-complex-mediated DNA repair by attenuating end resection. Nature Cell Biology. PMID 34354233 DOI: 10.1038/s41556-021-00723-9