David Wishart - Publications

Affiliations: 
The University of Alberta, Canada 

89 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Wishart DS, Li C, Marcu A, Badran H, Pon A, Budinski Z, Patron J, Lipton D, Cao X, Oler E, Li K, Paccoud M, Hong C, Guo AC, Chan C, et al. PathBank: a comprehensive pathway database for model organisms. Nucleic Acids Research. PMID 31602464 DOI: 10.1093/nar/gkz861  0.36
2019 Lipfert M, Rout MK, Berjanskii M, Wishart DS. Automated Tools for the Analysis of 1D-NMR and 2D-NMR Spectra. Methods in Molecular Biology (Clifton, N.J.). 2037: 429-449. PMID 31463859 DOI: 10.1007/978-1-4939-9690-2_24  0.56
2019 LeVatte MA, Lipfert M, Ladner-Keay C, Wishart DS. Preparation and characterization of a highly soluble Aβ peptide variant. Protein Expression and Purification. 164: 105480. PMID 31425755 DOI: 10.1016/j.pep.2019.105480  0.56
2019 LeVatte MA, Lipfert M, Zheng J, Wishart DS. A fast, sensitive, single-step colorimetric dipstick assay for quantifying ascorbic acid in urine. Analytical Biochemistry. PMID 31153872 DOI: 10.1016/j.ab.2019.05.015  0.56
2019 Vázquez-Fresno R, Rosana ARR, Sajed T, Onookome-Okome T, Wishart NA, Wishart DS. Herbs and Spices- Biomarkers of Intake Based on Human Intervention Studies - A Systematic Review. Genes & Nutrition. 14: 18. PMID 31143299 DOI: 10.1186/s12263-019-0636-8  0.32
2019 Foroutan A, Goldansaz SA, Lipfert M, Wishart DS. Protocols for NMR Analysis in Livestock Metabolomics. Methods in Molecular Biology (Clifton, N.J.). 1996: 311-324. PMID 31127564 DOI: 10.1007/978-1-4939-9488-5_23  0.56
2019 Djoumbou-Feunang Y, Pon A, Karu N, Zheng J, Li C, Arndt D, Gautam M, Allen F, Wishart DS. CFM-ID 3.0: Significantly Improved ESI-MS/MS Prediction and Compound Identification. Metabolites. 9. PMID 31013937 DOI: 10.3390/metabo9040072  0.36
2019 Foroutan A, Guo AC, Vazquez-Fresno R, Lipfert M, Zhang L, Zheng J, Badran H, Budinski Z, Mandal R, Ametaj BN, Wishart DS. Chemical Composition of Commercial Cow's Milk. Journal of Agricultural and Food Chemistry. PMID 30994344 DOI: 10.1021/acs.jafc.9b00204  0.56
2018 Khaniani Y, Lipfert M, Bhattacharyya D, Perez Pineiro R, Zheng J, Wishart DS. A Simple and Convenient Synthesis of Unlabeled and C-Labeled 3-(3-Hydroxyphenyl)-3-Hydroxypropionic Acid and Its Quantification in Human Urine Samples. Metabolites. 8. PMID 30469313 DOI: 10.3390/metabo8040080  0.56
2018 Münger LH, Garcia-Aloy M, Vázquez-Fresno R, Gille D, Rosana ARR, Passerini A, Soria-Florido MT, Pimentel G, Sajed T, Wishart DS, Andres Lacueva C, Vergères G, Praticò G. Biomarker of food intake for assessing the consumption of dairy and egg products. Genes & Nutrition. 13: 26. PMID 30279743 DOI: 10.1186/s12263-018-0615-5  0.32
2018 Glaves JP, Ladner-Keay CL, Bjorndahl TC, Wishart DS, Sykes BD. Erratum to Residue-specific mobility changes in soluble oligomers of the prion protein define regions involved in aggregation, BBAPAP (2018) 982-988. Biochimica Et Biophysica Acta. PMID 30077003 DOI: 10.1016/j.bbapap.2018.07.008  0.6
2018 Karu N, Deng L, Slae M, Guo AC, Sajed T, Huynh H, Wine E, Wishart DS. A review on human fecal metabolomics: Methods, applications and the human fecal metabolome database. Analytica Chimica Acta. 1030: 1-24. PMID 30032758 DOI: 10.1016/j.aca.2018.05.031  0.36
2018 Glaves JP, Ladner-Keay CL, Bjorndahl TC, Wishart DS, Sykes BD. Residue-specific mobility changes in soluble oligomers of the prion protein define regions involved in aggregation. Biochimica Et Biophysica Acta. PMID 29935976 DOI: 10.1016/j.bbapap.2018.06.005  0.6
2017 Wishart DS, Feunang YD, Marcu A, Guo AC, Liang K, Vázquez-Fresno R, Sajed T, Johnson D, Li C, Karu N, Sayeeda Z, Lo E, Assempour N, Berjanskii M, Singhal S, et al. HMDB 4.0: the human metabolome database for 2018. Nucleic Acids Research. PMID 29140435 DOI: 10.1093/nar/gkx1089  0.36
2017 Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, et al. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Research. PMID 29126136 DOI: 10.1093/nar/gkx1037  0.36
2017 Arndt D, Marcu A, Liang Y, Wishart DS. PHAST, PHASTER and PHASTEST: Tools for finding prophage in bacterial genomes. Briefings in Bioinformatics. PMID 29028989 DOI: 10.1093/bib/bbx121  0.36
2017 Goldansaz SA, Guo AC, Sajed T, Steele MA, Plastow GS, Wishart DS. Livestock metabolomics and the livestock metabolome: A systematic review. Plos One. 12: e0177675. PMID 28531195 DOI: 10.1371/journal.pone.0177675  0.56
2017 Ramirez-Gaona M, Marcu A, Pon A, Grant J, Wu A, Wishart DS. A Web Tool for Generating High Quality Machine-readable Biological Pathways. Journal of Visualized Experiments : Jove. PMID 28287524 DOI: 10.3791/54869  0.36
2016 Neveu V, Moussy A, Rouaix H, Wedekind R, Pon A, Knox C, Wishart DS, Scalbert A. Exposome-Explorer: a manually-curated database on biomarkers of exposure to dietary and environmental factors. Nucleic Acids Research. PMID 27924041 DOI: 10.1093/nar/gkw980  0.36
2016 Ramirez-Gaona M, Marcu A, Pon A, Guo AC, Sajed T, Wishart NA, Karu N, Djoumbou Feunang Y, Arndt D, Wishart DS. YMDB 2.0: a significantly expanded version of the yeast metabolome database. Nucleic Acids Research. PMID 27899612 DOI: 10.1093/nar/gkw1058  0.36
2016 Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, Wishart DS. ClassyFire: automated chemical classification with a comprehensive, computable taxonomy. Journal of Cheminformatics. 8: 61. PMID 27867422 DOI: 10.1186/s13321-016-0174-y  0.36
2016 Bahado-Singh RO, Syngelaki A, Mandal R, Graham SF, Akolekar R, Han B, Bjondahl TC, Dong E, Bauer S, Alpay-Savasan Z, Turkoglu O, Ogunyemi D, Poon LC, Wishart DS, Nicolaides KH. Metabolomic determination of pathogenesis of late-onset preeclampsia. The Journal of Maternal-Fetal & Neonatal Medicine : the Official Journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians. 1-7. PMID 27569705 DOI: 10.1080/14767058.2016.1185411  0.6
2016 Graham SF, Kumar PK, Bjorndahl T, Han B, Yilmaz A, Sherman E, Bahado-Singh RO, Wishart D, Mann D, Green BD. Metabolic signatures of Huntington's disease (HD): (1)H NMR analysis of the polar metabolome in post mortem human brain. Biochimica Et Biophysica Acta. PMID 27288730 DOI: 10.1016/j.bbadis.2016.06.007  0.6
2016 Tarailo-Graovac M, Shyr C, Ross CJ, Horvath GA, Salvarinova R, Ye XC, Zhang LH, Bhavsar AP, Lee JJ, Drögemöller BI, Abdelsayed M, Alfadhel M, Armstrong L, Baumgartner MR, Burda P, ... ... Wishart D, et al. Exome Sequencing and the Management of Neurometabolic Disorders. The New England Journal of Medicine. 374: 2246-2255. PMID 27276562 DOI: 10.1056/NEJMoa1515792  0.6
2016 Kaur K, Tarassova O, Dangeti RV, Azmi S, Wishart D, McMullen L, Stiles M. Characterization of a highly potent antimicrobial peptide microcin N from uropathogenic Escherichia coli. Fems Microbiology Letters. 363. PMID 27190283 DOI: 10.1093/femsle/fnw095  0.6
2016 Babicki S, Arndt D, Marcu A, Liang Y, Grant JR, Maciejewski A, Wishart DS. Heatmapper: web-enabled heat mapping for all. Nucleic Acids Research. PMID 27190236 DOI: 10.1093/nar/gkw419  0.36
2016 Arndt D, Grant JR, Marcu A, Sajed T, Pon A, Liang Y, Wishart DS. PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Research. PMID 27141966 DOI: 10.1093/nar/gkw387  0.36
2015 Sajed T, Marcu A, Ramirez M, Pon A, Guo AC, Knox C, Wilson M, Grant JR, Djoumbou Y, Wishart DS. ECMDB 2.0: A richer resource for understanding the biochemistry of E. coli. Nucleic Acids Research. PMID 26481353 DOI: 10.1093/nar/gkv1060  0.6
2015 MacKay S, Hermansen P, Wishart D, Chen J. Simulations of Interdigitated Electrode Interactions with Gold Nanoparticles for Impedance-Based Biosensing Applications. Sensors (Basel, Switzerland). 15: 22192-208. PMID 26364638 DOI: 10.3390/s150922192  0.6
2015 Berjanskii M, Arndt D, Liang Y, Wishart DS. A robust algorithm for optimizing protein structures with NMR chemical shifts. Journal of Biomolecular Nmr. 63: 255-64. PMID 26345175 DOI: 10.1007/s10858-015-9982-z  0.6
2015 Fatima T, Kesari V, Watt I, Wishart D, Todd JF, Schroeder WR, Paliyath G, Krishna P. Metabolite profiling and expression analysis of flavonoid, vitamin C and tocopherol biosynthesis genes in the antioxidant-rich sea buckthorn (Hippophae rhamnoides L.). Phytochemistry. 118: 181-91. PMID 26318327 DOI: 10.1016/j.phytochem.2015.08.008  0.6
2015 Ravanbakhsh S, Liu P, Bjorndahl TC, Mandal R, Grant JR, Wilson M, Eisner R, Sinelnikov I, Hu X, Luchinat C, Greiner R, Wishart DS. Correction: Accurate, Fully-Automated NMR Spectral Profiling for Metabolomics. Plos One. 10: e0132873. PMID 26222058 DOI: 10.1371/journal.pone.0132873  0.6
2015 Bahado-Singh RO, Syngelaki A, Akolekar R, Mandal R, Bjondahl TC, Han B, Dong E, Bauer S, Alpay-Savasan Z, Graham S, Turkoglu O, Wishart DS, Nicolaides KH. Validation of Metabolomic models for prediction of Early Onset Preeclampsia. American Journal of Obstetrics and Gynecology. PMID 26116099 DOI: 10.1016/j.ajog.2015.06.044  0.6
2015 Emwas AH, Luchinat C, Turano P, Tenori L, Roy R, Salek RM, Ryan D, Merzaban JS, Kaddurah-Daouk R, Zeri AC, Nagana Gowda GA, Raftery D, Wang Y, Brennan L, Wishart DS. Standardizing the experimental conditions for using urine in NMR-based metabolomic studies with a particular focus on diagnostic studies: a review. Metabolomics : Official Journal of the Metabolomic Society. 11: 872-894. PMID 26109927 DOI: 10.1007/s11306-014-0746-7  0.6
2015 Hafsa NE, Arndt D, Wishart DS. Accessible surface area from NMR chemical shifts. Journal of Biomolecular Nmr. 62: 387-401. PMID 26078090 DOI: 10.1007/s10858-015-9957-0  0.6
2015 Gutmanas A, Adams PD, Bardiaux B, Berman HM, Case DA, Fogh RH, Güntert P, Hendrickx PM, Herrmann T, Kleywegt GJ, Kobayashi N, Lange OF, Markley JL, Montelione GT, Nilges M, ... ... Wishart DS, et al. NMR Exchange Format: a unified and open standard for representation of NMR restraint data. Nature Structural & Molecular Biology. 22: 433-4. PMID 26036565 DOI: 10.1038/nsmb.3041  0.6
2015 Ravanbakhsh S, Liu P, Bjordahl TC, Mandal R, Grant JR, Wilson M, Eisner R, Sinelnikov I, Hu X, Luchinat C, Greiner R, Wishart DS. Accurate, fully-automated NMR spectral profiling for metabolomics. Plos One. 10: e0124219. PMID 26017271 DOI: 10.1371/journal.pone.0124219  0.6
2015 Pon A, Jewison T, Su Y, Liang Y, Knox C, Maciejewski A, Wilson M, Wishart DS. Pathways with PathWhiz. Nucleic Acids Research. 43: W552-9. PMID 25934797 DOI: 10.1093/nar/gkv399  0.36
2015 Liu Y, Liang Y, Wishart D. PolySearch2: a significantly improved text-mining system for discovering associations between human diseases, genes, drugs, metabolites, toxins and more. Nucleic Acids Research. 43: W535-42. PMID 25925572 DOI: 10.1093/nar/gkv383  0.36
2015 Sirrs S, van Karnebeek CD, Peng X, Shyr C, Tarailo-Graovac M, Mandal R, Testa D, Dubin D, Carbonetti G, Glynn SE, Sayson B, Robinson WP, Han B, Wishart D, Ross CJ, et al. Defects in fatty acid amide hydrolase 2 in a male with neurologic and psychiatric symptoms. Orphanet Journal of Rare Diseases. 10: 38. PMID 25885783 DOI: 10.1186/s13023-015-0248-3  0.6
2015 Dervishi E, Lam TH, Dunn SM, Zwierzchowski G, Saleem F, Wishart DS, Ametaj BN. Recombinant mouse prion protein alone or in combination with lipopolysaccharide alters expression of innate immunity genes in the colon of mice. Prion. 9: 59-73. PMID 25695140 DOI: 10.1080/19336896.2015.1019694  0.6
2015 Wishart D, Arndt D, Pon A, Sajed T, Guo AC, Djoumbou Y, Knox C, Wilson M, Liang Y, Grant J, Liu Y, Goldansaz SA, Rappaport SM. T3DB: the toxic exposome database. Nucleic Acids Research. 43: D928-34. PMID 25378312 DOI: 10.1093/nar/gku1004  0.6
2015 Switt AI, Sulakvelidze A, Wiedmann M, Kropinski AM, Wishart DS, Poppe C, Liang Y. Salmonella phages and prophages: genomics, taxonomy, and applied aspects. Methods in Molecular Biology (Clifton, N.J.). 1225: 237-87. PMID 25253259 DOI: 10.1007/978-1-4939-1625-2_15  0.6
2014 Su LJ, Fiehn O, Maruvada P, Moore SC, O'Keefe SJ, Wishart DS, Zanetti KA. The use of metabolomics in population-based research. Advances in Nutrition (Bethesda, Md.). 5: 785-8. PMID 25398741 DOI: 10.3945/an.114.006494  0.6
2014 Sulek K, Han TL, Villas-Boas SG, Wishart DS, Soh SE, Kwek K, Gluckman PD, Chong YS, Kenny LC, Baker PN. Hair metabolomics: identification of fetal compromise provides proof of concept for biomarker discovery. Theranostics. 4: 953-9. PMID 25057319 DOI: 10.7150/thno.9265  0.6
2014 Allen F, Pon A, Wilson M, Greiner R, Wishart D. CFM-ID: a web server for annotation, spectrum prediction and metabolite identification from tandem mass spectra. Nucleic Acids Research. 42: W94-9. PMID 24895432 DOI: 10.1093/nar/gku436  0.36
2014 Nayidu NK, Tan Y, Taheri A, Li X, Bjorndahl TC, Nowak J, Wishart DS, Hegedus D, Gruber MY. Brassica villosa, a system for studying non-glandular trichomes and genes in the Brassicas. Plant Molecular Biology. 85: 519-39. PMID 24831512 DOI: 10.1007/s11103-014-0201-1  0.6
2014 Chen J, Subramaniam S, Wishart D, Wong S. Guest Editorial- special issue on ‘-omics’ based companion diagnostics for personalized medicine. Ieee Transactions On Biomedical Circuits and Systems. 8: 1-3. PMID 24809069 DOI: 10.1109/TBCAS.2014.2308993  0.6
2014 MacKay S, Wishart D, Xing JZ, Chen J. Developing trends in aptamer-based biosensor devices and their applications. Ieee Transactions On Biomedical Circuits and Systems. 8: 4-14. PMID 24681915 DOI: 10.1109/TBCAS.2014.2304718  0.6
2014 Rappaport SM, Barupal DK, Wishart D, Vineis P, Scalbert A. The blood exposome and its role in discovering causes of disease. Environmental Health Perspectives. 122: 769-74. PMID 24659601 DOI: 10.1289/ehp.1308015  0.6
2014 Serpa JJ, Makepeace KA, Borchers TH, Wishart DS, Petrotchenko EV, Borchers CH. Using isotopically-coded hydrogen peroxide as a surface modification reagent for the structural characterization of prion protein aggregates. Journal of Proteomics. 100: 160-6. PMID 24316355 DOI: 10.1016/j.jprot.2013.11.020  0.6
2014 Law V, Knox C, Djoumbou Y, Jewison T, Guo AC, Liu Y, Maciejewski A, Arndt D, Wilson M, Neveu V, Tang A, Gabriel G, Ly C, Adamjee S, Dame ZT, ... ... Wishart DS, et al. DrugBank 4.0: shedding new light on drug metabolism. Nucleic Acids Research. 42: D1091-7. PMID 24203711 DOI: 10.1093/nar/gkt1068  0.6
2014 Jewison T, Su Y, Disfany FM, Liang Y, Knox C, Maciejewski A, Poelzer J, Huynh J, Zhou Y, Arndt D, Djoumbou Y, Liu Y, Deng L, Guo AC, Han B, ... ... Wishart DS, et al. SMPDB 2.0: big improvements to the Small Molecule Pathway Database. Nucleic Acids Research. 42: D478-84. PMID 24203708 DOI: 10.1093/nar/gkt1067  0.6
2014 Varadi M, Kosol S, Lebrun P, Valentini E, Blackledge M, Dunker AK, Felli IC, Forman-Kay JD, Kriwacki RW, Pierattelli R, Sussman J, Svergun DI, Uversky VN, Vendruscolo M, Wishart D, et al. pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins. Nucleic Acids Research. 42: D326-35. PMID 24174539 DOI: 10.1093/nar/gkt960  0.6
2013 Ghobakhlou A, Laberge S, Antoun H, Wishart DS, Xia J, Krishnamurthy R, Mandal R. Metabolomic analysis of cold acclimation of Arctic Mesorhizobium sp. strain N33. Plos One. 8: e84801. PMID 24386418 DOI: 10.1371/journal.pone.0084801  0.6
2013 Rothwell JA, Perez-Jimenez J, Neveu V, Medina-Remón A, M'hiri N, García-Lobato P, Manach C, Knox C, Eisner R, Wishart DS, Scalbert A. Phenol-Explorer 3.0: a major update of the Phenol-Explorer database to incorporate data on the effects of food processing on polyphenol content. Database : the Journal of Biological Databases and Curation. 2013: bat070. PMID 24103452 DOI: 10.1093/database/bat070  0.36
2013 Berjanskii MV, Wishart DS. A simple method to measure protein side-chain mobility using NMR chemical shifts. Journal of the American Chemical Society. 135: 14536-9. PMID 24032347 DOI: 10.1021/ja407509z  0.6
2013 Bouatra S, Aziat F, Mandal R, Guo AC, Wilson MR, Knox C, Bjorndahl TC, Krishnamurthy R, Saleem F, Liu P, Dame ZT, Poelzer J, Huynh J, Yallou FS, Psychogios N, ... ... Wishart DS, et al. The human urine metabolome. Plos One. 8: e73076. PMID 24023812 DOI: 10.1371/journal.pone.0073076  0.6
2013 Xia J, Fjell CD, Mayer ML, Pena OM, Wishart DS, Hancock RE. INMEX--a web-based tool for integrative meta-analysis of expression data. Nucleic Acids Research. 41: W63-70. PMID 23766290 DOI: 10.1093/nar/gkt338  0.6
2013 Jordheim LP, Barakat KH, Heinrich-Balard L, Matera EL, Cros-Perrial E, Bouledrak K, El Sabeh R, Perez-Pineiro R, Wishart DS, Cohen R, Tuszynski J, Dumontet C. Small molecule inhibitors of ERCC1-XPF protein-protein interaction synergize alkylating agents in cancer cells. Molecular Pharmacology. 84: 12-24. PMID 23580445 DOI: 10.1124/mol.112.082347  0.6
2013 Jetha NN, Semenchenko V, Wishart DS, Cashman NR, Marziali A. Nanopore analysis of wild-type and mutant prion protein (PrP(C)): single molecule discrimination and PrP(C) kinetics. Plos One. 8: e54982. PMID 23393562 DOI: 10.1371/journal.pone.0054982  0.6
2013 Li L, Li R, Zhou J, Zuniga A, Stanislaus AE, Wu Y, Huan T, Zheng J, Shi Y, Wishart DS, Lin G. MyCompoundID: using an evidence-based metabolome library for metabolite identification. Analytical Chemistry. 85: 3401-8. PMID 23373753 DOI: 10.1021/ac400099b  0.6
2013 Canam T, Li X, Holowachuk J, Yu M, Xia J, Mandal R, Krishnamurthy R, Bouatra S, Sinelnikov I, Yu B, Grenkow L, Wishart DS, Steppuhn H, Falk KC, Dumonceaux TJ, et al. Differential metabolite profiles and salinity tolerance between two genetically related brown-seeded and yellow-seeded Brassica carinata lines. Plant Science : An International Journal of Experimental Plant Biology. 198: 17-26. PMID 23199683 DOI: 10.1016/j.plantsci.2012.09.011  0.6
2013 Wishart DS, Jewison T, Guo AC, Wilson M, Knox C, Liu Y, Djoumbou Y, Mandal R, Aziat F, Dong E, Bouatra S, Sinelnikov I, Arndt D, Xia J, Liu P, et al. HMDB 3.0--The Human Metabolome Database in 2013. Nucleic Acids Research. 41: D801-7. PMID 23161693 DOI: 10.1093/nar/gks1065  0.6
2013 Guo AC, Jewison T, Wilson M, Liu Y, Knox C, Djoumbou Y, Lo P, Mandal R, Krishnamurthy R, Wishart DS. ECMDB: the E. coli Metabolome Database. Nucleic Acids Research. 41: D625-30. PMID 23109553 DOI: 10.1093/nar/gks992  0.6
2012 Barakat KH, Jordheim LP, Perez-Pineiro R, Wishart D, Dumontet C, Tuszynski JA. Virtual screening and biological evaluation of inhibitors targeting the XPA-ERCC1 interaction. Plos One. 7: e51329. PMID 23272099 DOI: 10.1371/journal.pone.0051329  0.6
2012 Walsh BH, Broadhurst DI, Mandal R, Wishart DS, Boylan GB, Kenny LC, Murray DM. The metabolomic profile of umbilical cord blood in neonatal hypoxic ischaemic encephalopathy. Plos One. 7: e50520. PMID 23227182 DOI: 10.1371/journal.pone.0050520  0.6
2012 Rothwell JA, Urpi-Sarda M, Boto-Ordoñez M, Knox C, Llorach R, Eisner R, Cruz J, Neveu V, Wishart D, Manach C, Andres-Lacueva C, Scalbert A. Phenol-Explorer 2.0: a major update of the Phenol-Explorer database integrating data on polyphenol metabolism and pharmacokinetics in humans and experimental animals. Database : the Journal of Biological Databases and Curation. 2012: bas031. PMID 22879444 DOI: 10.1093/database/bas031  0.36
2012 Arndt D, Xia J, Liu Y, Zhou Y, Guo AC, Cruz JA, Sinelnikov I, Budwill K, Nesbø CL, Wishart DS. METAGENassist: a comprehensive web server for comparative metagenomics. Nucleic Acids Research. 40: W88-95. PMID 22645318 DOI: 10.1093/nar/gks497  0.6
2012 Fatima T, Snyder CL, Schroeder WR, Cram D, Datla R, Wishart D, Weselake RJ, Krishna P. Fatty acid composition of developing sea buckthorn (Hippophae rhamnoides L.) berry and the transcriptome of the mature seed. Plos One. 7: e34099. PMID 22558083 DOI: 10.1371/journal.pone.0034099  0.6
2012 Mandal R, Guo AC, Chaudhary KK, Liu P, Yallou FS, Dong E, Aziat F, Wishart DS. Multi-platform characterization of the human cerebrospinal fluid metabolome: a comprehensive and quantitative update. Genome Medicine. 4: 38. PMID 22546835 DOI: 10.1186/gm337  0.36
2012 Hall LM, Hall LH, Kertesz TM, Hill DW, Sharp TR, Oblak EZ, Dong YW, Wishart DS, Chen MH, Grant DF. Development of Ecomâ‚…â‚€ and retention index models for nontargeted metabolomics: identification of 1,3-dicyclohexylurea in human serum by HPLC/mass spectrometry. Journal of Chemical Information and Modeling. 52: 1222-37. PMID 22489687 DOI: 10.1021/ci300092s  0.6
2012 Issack BB, Berjanskii M, Wishart DS, Stepanova M. Exploring the essential collective dynamics of interacting proteins: application to prion protein dimers. Proteins. 80: 1847-65. PMID 22488640 DOI: 10.1002/prot.24082  0.6
2012 Friesen DE, Barakat KH, Semenchenko V, Perez-Pineiro R, Fenske BW, Mane J, Wishart DS, Tuszynski JA. Discovery of small molecule inhibitors that interact with γ-tubulin. Chemical Biology & Drug Design. 79: 639-52. PMID 22268380 DOI: 10.1111/j.1747-0285.2012.01340.x  0.6
2012 Cruz J, Liu Y, Liang Y, Zhou Y, Wilson M, Dennis JJ, Stothard P, Van Domselaar G, Wishart DS. BacMap: an up-to-date electronic atlas of annotated bacterial genomes. Nucleic Acids Research. 40: D599-604. PMID 22135301 DOI: 10.1093/nar/gkr1105  0.6
2012 Jewison T, Knox C, Neveu V, Djoumbou Y, Guo AC, Lee J, Liu P, Mandal R, Krishnamurthy R, Sinelnikov I, Wilson M, Wishart DS. YMDB: the Yeast Metabolome Database. Nucleic Acids Research. 40: D815-20. PMID 22064855 DOI: 10.1093/nar/gkr916  0.36
2011 Lin D, Hollander Z, Meredith A, Stadnick E, Sasaki M, Cohen Freue G, Qasimi P, Mui A, Ng RT, Balshaw R, Wilson-McManus JE, Wishart D, Hau D, Keown PA, McMaster R, et al. Molecular signatures of end-stage heart failure. Journal of Cardiac Failure. 17: 867-74. PMID 21962426 DOI: 10.1016/j.cardfail.2011.07.001  0.6
2011 Grad LI, Guest WC, Yanai A, Pokrishevsky E, O'Neill MA, Gibbs E, Semenchenko V, Yousefi M, Wishart DS, Plotkin SS, Cashman NR. Intermolecular transmission of superoxide dismutase 1 misfolding in living cells. Proceedings of the National Academy of Sciences of the United States of America. 108: 16398-403. PMID 21930926 DOI: 10.1073/pnas.1102645108  0.6
2011 Orchard S, Al-Lazikani B, Bryant S, Clark D, Calder E, Dix I, Engkvist O, Forster M, Gaulton A, Gilson M, Glen R, Grigorov M, Hammond-Kosack K, Harland L, Hopkins A, ... ... Wishart D, et al. Minimum information about a bioactive entity (MIABE). Nature Reviews. Drug Discovery. 10: 661-9. PMID 21878981 DOI: 10.1038/nrd3503  0.6
2011 Perez-Pineiro R, Bjorndahl TC, Berjanskii MV, Hau D, Li L, Huang A, Lee R, Gibbs E, Ladner C, Dong YW, Abera A, Cashman NR, Wishart DS. The prion protein binds thiamine. The Febs Journal. 278: 4002-14. PMID 21848803 DOI: 10.1111/j.1742-4658.2011.08304.x  0.6
2011 Julien O, Chatterjee S, Bjorndahl TC, Sweeting B, Acharya S, Semenchenko V, Chakrabartty A, Pai EF, Wishart DS, Sykes BD, Cashman NR. Relative and regional stabilities of the hamster, mouse, rabbit, and bovine prion proteins toward urea unfolding assessed by nuclear magnetic resonance and circular dichroism spectroscopies. Biochemistry. 50: 7536-45. PMID 21800884 DOI: 10.1021/bi200731e  0.6
2011 Zhou Y, Liang Y, Lynch KH, Dennis JJ, Wishart DS. PHAST: a fast phage search tool. Nucleic Acids Research. 39: W347-52. PMID 21672955 DOI: 10.1093/nar/gkr485  0.32
2011 Knox C, Law V, Jewison T, Liu P, Ly S, Frolkis A, Pon A, Banco K, Mak C, Neveu V, Djoumbou Y, Eisner R, Guo AC, Wishart DS. DrugBank 3.0: a comprehensive resource for 'omics' research on drugs. Nucleic Acids Research. 39: D1035-41. PMID 21059682 DOI: 10.1093/nar/gkq1126  0.36
2010 Lim E, Pon A, Djoumbou Y, Knox C, Shrivastava S, Guo AC, Neveu V, Wishart DS. T3DB: a comprehensively annotated database of common toxins and their targets. Nucleic Acids Research. 38: D781-6. PMID 19897546 DOI: 10.1093/nar/gkp934  0.36
1994 Wishart DS, Boyko RF, Willard L, Richards FM, Sykes BD. SEQSEE: a comprehensive program suite for protein sequence analysis. Computer Applications in the Biosciences : Cabios. 10: 121-32. PMID 8019859 DOI: 10.1093/bioinformatics/10.2.121  0.6
1993 Wishart DS, Sykes BD, Richards FM. Improved synthetic methods for the selective deuteration of aromatic amino acids: applications of selective protonation towards the identification of protein folding intermediates through nuclear magnetic resonance. Biochimica Et Biophysica Acta. 1164: 36-46. PMID 8390859 DOI: 10.1016/0167-4838(93)90109-5  0.6
1992 Wishart DS, Sykes BD, Richards FM. The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy. Biochemistry. 31: 1647-51. PMID 1737021  0.6
1991 Wishart DS, Sykes BD, Richards FM. Relationship between nuclear magnetic resonance chemical shift and protein secondary structure. Journal of Molecular Biology. 222: 311-33. PMID 1960729 DOI: 10.1016/0022-2836(91)90214-Q  0.6
1991 Wishart DS, Sykes BD, Richards FM. Simple techniques for the quantification of protein secondary structure by 1H NMR spectroscopy. Febs Letters. 293: 72-80. PMID 1959674 DOI: 10.1016/0014-5793(91)81155-2  0.6
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