Rachel M. Mitton-Fry, Ph.D. - Related publications

Affiliations: 
Chemistry and Biochemistry Denison University, Granville, OH, United States 
Area:
telomeres
Website:
http://www.denison.edu/academics/departments/chemistry/rachel_mitton_fry.html
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Sohrabi-Jahromi S, Söding J. Thermodynamic modeling reveals widespread multivalent binding by RNA-binding proteins. Bioinformatics (Oxford, England). 37: i308-i316. PMID 34252974 DOI: 10.1093/bioinformatics/btab300   
2021 Sohrabi-Jahromi S, Söding J. Thermodynamic modeling reveals widespread multivalent binding by RNA-binding proteins. Bioinformatics (Oxford, England). 37: i308-i316. PMID 34252974 DOI: 10.1093/bioinformatics/btab300   
2021 Wu T, Nance J, Chu F, Fazzio TG. Characterization of R-loop-interacting proteins in embryonic stem cells reveals roles in ribosomal RNA processing and gene expression. Molecular & Cellular Proteomics : McP. 100142. PMID 34478875 DOI: 10.1016/j.mcpro.2021.100142   
2021 Zhou W, Melamed D, Banyai G, Meyer C, Tuschl T, Wickens M, Cao J, Fields S. Expanding the binding specificity for RNA recognition by a PUF domain. Nature Communications. 12: 5107. PMID 34429425 DOI: 10.1038/s41467-021-25433-6   
2021 Bartle L, Vasianovich Y, Wellinger RJ. Maturation and shuttling of the yeast telomerase RNP: assembling something new using recycled parts. Current Genetics. PMID 34476547 DOI: 10.1007/s00294-021-01210-2   
2021 Aphasizheva I, Suematsu T, Vacas A, Wang H, Fan C, Zhao X, Zhang L, Aphasizhev R. CTS tag-based methods for investigating mitochondrial RNA modification factors in Trypanosoma brucei. Methods in Enzymology. 658: 83-109. PMID 34517961 DOI: 10.1016/bs.mie.2021.06.004   
2021 Shan M, Ji X, Janssen K, Silverman IM, Humenik J, Garcia BA, Liebhaber SA, Gregory BD. Dynamic changes in RNA-protein interactions and RNA secondary structure in mammalian erythropoiesis. Life Science Alliance. 4. PMID 34315813 DOI: 10.26508/lsa.202000659   
2021 Lentzsch AM, Stamos JL, Yao J, Russell R, Lambowitz AM. Structural basis for template switching by a group II intron-encoded non-LTR-retroelement reverse transcriptase. The Journal of Biological Chemistry. 100971. PMID 34280434 DOI: 10.1016/j.jbc.2021.100971   
2021 Lentzsch AM, Stamos JL, Yao J, Russell R, Lambowitz AM. Structural basis for template switching by a group II intron-encoded non-LTR-retroelement reverse transcriptase. The Journal of Biological Chemistry. 100971. PMID 34280434 DOI: 10.1016/j.jbc.2021.100971   
2021 Rodgers ML, Woodson SA. A roadmap for rRNA folding and assembly during transcription. Trends in Biochemical Sciences. PMID 34176739 DOI: 10.1016/j.tibs.2021.05.009   
2021 Rodgers ML, Woodson SA. A roadmap for rRNA folding and assembly during transcription. Trends in Biochemical Sciences. PMID 34176739 DOI: 10.1016/j.tibs.2021.05.009   
2021 Schmidt A, Hanspach G, Hengesbach M. Structural dynamics govern substrate recruitment and catalytic turnover in H/ACA RNP pseudouridylation. Rna Biology. 18: 1300-1309. PMID 33111609 DOI: 10.1080/15476286.2020.1842984   
2021 Su Z, Zhang K, Kappel K, Li S, Palo MZ, Pintilie GD, Rangan R, Luo B, Wei Y, Das R, Chiu W. Cryo-EM structures of full-length Tetrahymena ribozyme at 3.1 Å resolution. Nature. PMID 34381213 DOI: 10.1038/s41586-021-03803-w   
2021 Du Pont KE, McCullagh M, Geiss BJ. Conserved motifs in the flavivirus NS3 RNA helicase enzyme. Wiley Interdisciplinary Reviews. Rna. e1688. PMID 34472205 DOI: 10.1002/wrna.1688   
2021 Huang H, Karbstein K. Assembly factors chaperone ribosomal RNA folding by isolating helical junctions that are prone to misfolding. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34135123 DOI: 10.1073/pnas.2101164118   
2021 Zhao B, Katuwawala A, Oldfield CJ, Hu G, Wu Z, Uversky VN, Kurgan L. Intrinsic Disorder in Human RNA-binding Proteins. Journal of Molecular Biology. 167229. PMID 34487791 DOI: 10.1016/j.jmb.2021.167229   
2021 Chen S, Xing L, Zhang D, Monferrer A, Hermann T. Nano-sandwich composite by kinetic trapping assembly from protein and nucleic acid. Nucleic Acids Research. PMID 34500473 DOI: 10.1093/nar/gkab797   
2021 Vandelli A, Cid Samper F, Torrent Burgas M, Sanchez de Groot N, Gaetano Tartaglia G. Interplay between disordered regions in RNAs and proteins modulates interactions within stress granules and processing bodies. Journal of Molecular Biology. 167159. PMID 34274326 DOI: 10.1016/j.jmb.2021.167159   
2021 Asadzadeh H, Moosavi A, Alexandrakis G, Mofrad MRK. Atomic Scale Interactions between RNA and DNA Aptamers with the TNF- Protein. Biomed Research International. 2021: 9926128. PMID 34327241 DOI: 10.1155/2021/9926128   
2021 Hallegger M, Chakrabarti AM, Lee FCY, Lee BL, Amalietti AG, Odeh HM, Copley KE, Rubien JD, Portz B, Kuret K, Huppertz I, Rau F, Patani R, Fawzi NL, Shorter J, et al. TDP-43 condensation properties specify its RNA-binding and regulatory repertoire. Cell. PMID 34380047 DOI: 10.1016/j.cell.2021.07.018   
2021 Brown RS, Kim L, Kielian M. Specific Recognition of a Stem-Loop RNA Structure by the Alphavirus Capsid Protein. Viruses. 13. PMID 34452382 DOI: 10.3390/v13081517   
2021 El-Kamand S, Du Plessis MD, Breen N, Johnson L, Beard S, Kwan AH, Richard DJ, Cubeddu L, Gamsjaeger R. A distinct ssDNA/RNA binding interface in the Nsp9 protein from SARS-CoV-2. Proteins. PMID 34369011 DOI: 10.1002/prot.26205   
2021 Gudanis D, Zielińska K, Baranowski D, Kierzek R, Kozłowski P, Gdaniec Z. Impact of a Single Nucleotide Change or Non-Nucleoside Modifications in G-Rich Region on the Quadruplex-Duplex Hybrid Formation. Biomolecules. 11. PMID 34439902 DOI: 10.3390/biom11081236   
2021 Chorostecki U, Saus E, Gabaldón T. Structural characterization of NORAD reveals a stabilizing role of spacers and two new repeat units. Computational and Structural Biotechnology Journal. 19: 3245-3254. PMID 34141143 DOI: 10.1016/j.csbj.2021.05.045   
2021 Ye Q, Lu S, Corbett KD. Structural Basis for SARS-CoV-2 Nucleocapsid Protein Recognition by Single-Domain Antibodies. Frontiers in Immunology. 12: 719037. PMID 34381460 DOI: 10.3389/fimmu.2021.719037   
2021 Hollin T, Abel S, Le Roch KG. Genome-Wide Analysis of RNA-Protein Interactions in Plasmodium falciparum Using eCLIP-Seq. Methods in Molecular Biology (Clifton, N.J.). 2369: 139-164. PMID 34313988 DOI: 10.1007/978-1-0716-1681-9_9   
2021 Floro J, Dai A, Metzger A, Mora-Martin A, Ganem NJ, Cifuentes D, Wu CS, Dalal J, Lyons SM, Labadorf A, Flynn RL. SDE2 is an essential gene required for ribosome biogenesis and the regulation of alternative splicing. Nucleic Acids Research. PMID 34365507 DOI: 10.1093/nar/gkab647   
2021 Lanjanian H, Nematzadeh S, Hosseini S, Torkamanian-Afshar M, Kiani F, Moazzam-Jazi M, Aydin N, Masoudi-Nejad A. High-throughput analysis of the interactions between viral proteins and host cell RNAs. Computers in Biology and Medicine. 135: 104611. PMID 34246161 DOI: 10.1016/j.compbiomed.2021.104611   
2021 Fukunaga K, Yokobayashi Y. Directed evolution of orthogonal RNA-RBP pairs through library-vs-library in vitro selection. Nucleic Acids Research. PMID 34219162 DOI: 10.1093/nar/gkab527   
2021 Ishikawa R, Yasuda M, Sasaki S, Ma Y, Nagasawa K, Tera M. Stabilization of telomeric G-quadruplex by ligand binding increases susceptibility to S1 nuclease. Chemical Communications (Cambridge, England). PMID 34263271 DOI: 10.1039/d1cc03294a   
2021 Ishikawa R, Yasuda M, Sasaki S, Ma Y, Nagasawa K, Tera M. Stabilization of telomeric G-quadruplex by ligand binding increases susceptibility to S1 nuclease. Chemical Communications (Cambridge, England). PMID 34263271 DOI: 10.1039/d1cc03294a   
2021 Jiang J, Zhang T, Pan Y, Hu Z, Yuan J, Hu X, Zhang L, Zhang Y. Characterization of Long Non-coding RNA Associated Proteins by RNA-Immunoprecipitation. Methods in Molecular Biology (Clifton, N.J.). 2372: 19-26. PMID 34417739 DOI: 10.1007/978-1-0716-1697-0_3   
2021 Villa R, Jagtap PKA, Thomae AW, Campos Sparr A, Forné I, Hennig J, Straub T, Becker PB. Divergent evolution toward sex chromosome-specific gene regulation in . Genes & Development. 35: 1055-1070. PMID 34140353 DOI: 10.1101/gad.348411.121   
2021 Villa R, Jagtap PKA, Thomae AW, Campos Sparr A, Forné I, Hennig J, Straub T, Becker PB. Divergent evolution toward sex chromosome-specific gene regulation in . Genes & Development. 35: 1055-1070. PMID 34140353 DOI: 10.1101/gad.348411.121   
2021 Pyle JD, Whelan SPJ. Isolation of reconstructed functional ribonucleoprotein complexes of Machupo virus. Journal of Virology. JVI0105421. PMID 34432522 DOI: 10.1128/JVI.01054-21   
2021 Bonilla SL, Denny SK, Shin JH, Alvarez-Buylla A, Greenleaf WJ, Herschlag D. High-throughput dissection of the thermodynamic and conformational properties of a ubiquitous class of RNA tertiary contact motifs. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34373334 DOI: 10.1073/pnas.2109085118   
2021 Kim J, Ma L. Capturing Endogenous Long Noncoding RNAs and Their Binding Proteins Using Chromatin Isolation by RNA Purification. Methods in Molecular Biology (Clifton, N.J.). 2372: 85-92. PMID 34417745 DOI: 10.1007/978-1-0716-1697-0_9   
2021 Al Mazid MF, Shkel O, Kharkivska Y, Lee JS. Application of fluorescent turn-on aptamers in RNA studies. Molecular Omics. PMID 34137415 DOI: 10.1039/d1mo00085c   
2021 Sun Y, Li Y, Dong W, Sun A, Chen N, Zhao Z, Li Y, Li C, Yang G. Molecular characterization of a novel mycovirus isolated from Rhizoctonia solani AG-1 IA strain 9-11. Archives of Virology. PMID 34524536 DOI: 10.1007/s00705-021-05219-3   
2021 Bayne RA, Jayachandran U, Kasprowicz A, Bresson S, Tollervey D, Wallace EWJ, Cook AG. Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition site. Nucleic Acids Research. PMID 34302485 DOI: 10.1093/nar/gkab615   
2021 Qu J, Xie Y, Guo Z, Liu X, Jiang J, Chen T, Li K, Hu Z, Luo D. Identification of a Novel Cleavage Site and Confirmation of the Effectiveness of NgAgo Gene Editing on RNA Targets. Molecular Biotechnology. PMID 34302285 DOI: 10.1007/s12033-021-00372-1   
2021 Das B, Murata A, Nakatani K. A small-molecule fluorescence probe ANP77 for sensing RNA internal loop of C, U and A/CC motifs and their binding molecules. Nucleic Acids Research. PMID 34358308 DOI: 10.1093/nar/gkab650   
2021 Carlomagno T, Aguion P, Kirkpatrick J, Marchanka A. Identification of RNA base pairs and complete assignment of nucleobase resonances by 1H-detected solid-state NMR spectroscopy at 100 kHz MAS. Angewandte Chemie (International Ed. in English). PMID 34379871 DOI: 10.1002/anie.202107263   
2021 Emmanouilidis L, Esteban-Hofer L, Jeschke G, Allain FH. Structural biology of RNA-binding proteins in the context of phase separation: What NMR and EPR can bring? Current Opinion in Structural Biology. 70: 132-138. PMID 34371262 DOI: 10.1016/j.sbi.2021.07.001   
2021 Zhou H, Wekesa JS, Luan Y, Meng J. PRPI-SC: an ensemble deep learning model for predicting plant lncRNA-protein interactions. Bmc Bioinformatics. 22: 415. PMID 34429059 DOI: 10.1186/s12859-021-04328-9   
2021 Akiyama BM, Graham ME, O Donoghue Z, Beckham JD, Kieft JS. Three-dimensional structure of a flavivirus dumbbell RNA reveals molecular details of an RNA regulator of replication. Nucleic Acids Research. 49: 7122-7138. PMID 34133732 DOI: 10.1093/nar/gkab462   
2021 Akiyama BM, Graham ME, O Donoghue Z, Beckham JD, Kieft JS. Three-dimensional structure of a flavivirus dumbbell RNA reveals molecular details of an RNA regulator of replication. Nucleic Acids Research. 49: 7122-7138. PMID 34133732 DOI: 10.1093/nar/gkab462   
2021 Chen J, Zhu D, Huang T, Yang Z, Liu B, Sun M, Chen JX, Dai Z, Zou X. Isothermal Self-Primer EXPonential Amplification Reaction (SPEXPAR) for Highly Sensitive Detection of Single-Stranded Nucleic Acids and Proteins. Analytical Chemistry. PMID 34491714 DOI: 10.1021/acs.analchem.1c02588   
2021 Macošek J, Simon B, Linse JB, Jagtap PKA, Winter SL, Foot J, Lapouge K, Perez K, Rettel M, Ivanović MT, Masiewicz P, Murciano B, Savitski MM, Loedige I, Hub JS, et al. Structure and dynamics of the quaternary hunchback mRNA translation repression complex. Nucleic Acids Research. PMID 34329466 DOI: 10.1093/nar/gkab635   
2021 Duan N, Arroyo M, Deng W, Cardoso MC, Leonhardt H. Visualization and characterization of RNA-protein interactions in living cells. Nucleic Acids Research. PMID 34313753 DOI: 10.1093/nar/gkab614