Rajarshi Chakrabarti - Publications

Affiliations: 
2013- Chemistry Indian Institute of Technology Bombay, Mumbai, Maharashtra, India 
Area:
Statistical Mechanics, Polymer Physics, Theoretical Physical Chemistry, Soft Matter, Biophysics
Website:
http://rajarshichakrabarti.wix.com/rajarshichakrabarti

58 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Yadav RS, Sharma S, Metzler R, Chakrabarti R. A passive star polymer in a dense active bath: insights from computer simulations. Soft Matter. 20: 3910-3922. PMID 38700098 DOI: 10.1039/d4sm00144c  0.665
2024 Gaikwad V, Choudhury AR, Chakrabarti R. Decoding the dynamics of BCL9 triazole stapled peptide. Biophysical Chemistry. 307: 107197. PMID 38335808 DOI: 10.1016/j.bpc.2024.107197  0.568
2023 Kumar P, Chakrabarti R. Escape dynamics of a self-propelled nanorod from circular confinements with narrow openings. Soft Matter. PMID 37623699 DOI: 10.1039/d3sm00723e  0.5
2023 Sahoo R, Chakrabarti R. Structure and dynamics of an active polymer chain inside a nanochannel grafted with polymers. Soft Matter. 19: 5978-5988. PMID 37497754 DOI: 10.1039/d3sm00618b  0.623
2023 Theeyancheri L, Chaki S, Bhattacharjee T, Chakrabarti R. Active dynamics of linear chains and rings in porous media. The Journal of Chemical Physics. 159. PMID 37403853 DOI: 10.1063/5.0148744  0.782
2023 Chaki S, Theeyancheri L, Chakrabarti R. A polymer chain with dipolar active forces in connection to spatial organization of chromatin. Soft Matter. 19: 1348-1355. PMID 36723034 DOI: 10.1039/d2sm01170k  0.641
2023 Yadav RS, Das C, Chakrabarti R. Dynamics of a spherical self-propelled tracer in a polymeric medium: interplay of self-propulsion, stickiness, and crowding. Soft Matter. PMID 36598025 DOI: 10.1039/d2sm01626e  0.666
2023 Kumar P, Chakrabarti R. Dynamics of self-propelled tracer particles inside a polymer network. Physical Chemistry Chemical Physics : Pccp. 25: 1937-1946. PMID 36541408 DOI: 10.1039/d2cp04253c  0.495
2022 Theeyancheri L, Sahoo R, Kumar P, Chakrabarti R. In Silico Studies of Active Probe Dynamics in Crowded Media. Acs Omega. 7: 33637-33650. PMID 36188301 DOI: 10.1021/acsomega.2c04709  0.655
2022 Agadi N, Maity A, Jha AK, Chakrabarti R, Kumar A. Distinct mode of membrane interaction and disintegration by diverse class of antimicrobial peptides. Biochimica Et Biophysica Acta. Biomembranes. 184047. PMID 36100074 DOI: 10.1016/j.bbamem.2022.184047  0.747
2022 Theeyancheri L, Chaki S, Bhattacharjee T, Chakrabarti R. Migration of active rings in porous media. Physical Review. E. 106: 014504. PMID 35974648 DOI: 10.1103/PhysRevE.106.014504  0.77
2022 Nanavare P, Choudhury AR, Sarkar S, Maity A, Chakrabarti R. Structure and Orientation of Water and Choline Chloride Molecules around a Methane Hydrophobe: A Computer Simulation Study. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. e202200446. PMID 35851985 DOI: 10.1002/cphc.202200446  0.711
2022 Choudhury AR, Maity A, Chakraborty S, Chakrabarti R. Computational design of stapled peptide inhibitor against SARS-CoV-2 receptor binding domain. Peptide Science (Hoboken, N.J.). e24267. PMID 35574509 DOI: 10.1002/pep2.24267  0.756
2022 Kumar P, Theeyancheri L, Chakrabarti R. Chemically symmetric and asymmetric self-driven rigid dumbbells in a 2D polymer gel. Soft Matter. 18: 2663-2671. PMID 35311848 DOI: 10.1039/d1sm01820e  0.465
2022 Goswami K, Chakrabarti R. Motion of an active particle with dynamical disorder. Soft Matter. 18: 2332-2345. PMID 35244134 DOI: 10.1039/d1sm01816g  0.772
2022 Sahoo R, Theeyancheri L, Chakrabarti R. Transport of a self-propelled tracer through a hairy cylindrical channel: interplay of stickiness and activity. Soft Matter. 18: 1310-1318. PMID 35060583 DOI: 10.1039/d1sm01693h  0.597
2021 Sarkar S, Maity A, Chakrabarti R. In Silico Elucidation of Molecular Picture of Water-Choline Chloride Mixture. The Journal of Physical Chemistry. B. PMID 34812630 DOI: 10.1021/acs.jpcb.1c06636  0.785
2021 Goswami K, Chakrabarti R. Stochastic resetting and first arrival subjected to Gaussian noise and Poisson white noise. Physical Review. E. 104: 034113. PMID 34654068 DOI: 10.1103/PhysRevE.104.034113  0.752
2021 Maity A, Choudhury AR, Chakrabarti R. Effect of Stapling on the Thermodynamics of mdm2-p53 Binding. Journal of Chemical Information and Modeling. PMID 33830760 DOI: 10.1021/acs.jcim.1c00219  0.759
2021 Sarkar S, Maity A, Chakrabarti R. Microscopic structural features of water in aqueous-reline mixtures of varying compositions. Physical Chemistry Chemical Physics : Pccp. PMID 33532810 DOI: 10.1039/d0cp05341d  0.778
2020 Theeyancheri L, Chaki S, Samanta N, Goswami R, Chelakkot R, Chakrabarti R. Translational and rotational dynamics of a self-propelled Janus probe in crowded environments. Soft Matter. PMID 32822444 DOI: 10.1039/D0Sm00339E  0.751
2020 Kaiser M, Sánchez PA, Samanta N, Chakrabarti R, Kantorovich SS. Directing the diffusion of a non-magnetic nanosized active particle with external magnetic fields. The Journal of Physical Chemistry. B. PMID 32790376 DOI: 10.1021/Acs.Jpcb.0C05791  0.761
2020 Chaki S, Chakrabarti R. Escape of a passive particle from an activity-induced energy landscape: emergence of slow and fast effective diffusion. Soft Matter. PMID 32657294 DOI: 10.1039/D0Sm00711K  0.657
2020 Maity A, Sarkar S, Theeyancheri L, Chakrabarti R. Choline chloride as a nano-crowder protects HP-36 from urea-induced denaturation: Insights from Solvent Dynamics and Protein-Solvent interaction. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 31971306 DOI: 10.1002/Cphc.201901078  0.793
2020 Kailasham R, Prakash, JR, Chakrabarti R. Wet and dry internal friction can be measured with the Jarzynski equality Phys. Rev. Res. 2: 013331. DOI: 10.1103/Physrevresearch.2.013331  0.46
2019 Kumar P, Theeyancheri L, Chaki S, Chakrabarti R. Transport of probe particles in a polymer network: effects of probe size, network rigidity and probe-polymer interaction. Soft Matter. PMID 31681926 DOI: 10.1039/C9Sm01822K  0.7
2019 Chaki S, Chakrabarti R. Enhanced diffusion, swelling, and slow reconfiguration of a single chain in non-Gaussian active bath. The Journal of Chemical Physics. 150: 094902. PMID 30849884 DOI: 10.1063/1.5086152  0.675
2019 Dubey R, Patil K, Dantu SC, Sardesai DM, Bhatia P, Malik N, Acharya JD, Sarkar S, Ghosh S, Chakrabarti R, Sharma S, Kumar A. Azadirachtin inhibits amyloid formation, disaggregates pre-formed fibrils and protects pancreatic β-cells from human islet amyloid polypeptide/amylin induced cytotoxicity. The Biochemical Journal. PMID 30814273 DOI: 10.1042/Bcj20180820  0.729
2019 Chaki S, Chakrabarti R. Effects of active fluctuations on energetics of a colloidal particle: superdiffusion, dissipation and entropy production Physica A. 530: 121574. DOI: 10.1016/J.Physa.2019.121574  0.646
2018 Sarkar S, Maity A, Sarma Phukon A, Ghosh S, Chakrabarti R. Salt Induced Structural Collapse, Swelling and Signature of Aggregation of Two ssDNA Strands: Insights from Molecular Dynamics Simulation. The Journal of Physical Chemistry. B. PMID 30540471 DOI: 10.1021/Acs.Jpcb.8B09098  0.771
2018 Kailasham R, Chakrabarti R, Prakash JR. Rheological consequences of wet and dry friction in a dumbbell model with hydrodynamic interactions and internal viscosity. The Journal of Chemical Physics. 149: 094903. PMID 30195310 DOI: 10.1063/1.5040397  0.423
2018 Chaki S, Chakrabarti R. Entropy production and work fluctuation relations for a single particle in active bath Physica A. 511: 302-315. DOI: 10.1016/J.Physa.2018.07.055  0.648
2017 Ghosh S, Dey S, Patel M, Chakrabarti R. Can an ammonium-based room temperature ionic liquid counteract the urea-induced denaturation of a small peptide? Physical Chemistry Chemical Physics : Pccp. PMID 28262899 DOI: 10.1039/C6Cp08842B  0.62
2016 Samanta N, Chakrabarti R. Tracer diffusion in a sea of polymers with binding zones: mobile vs. frozen traps. Soft Matter. PMID 27714359 DOI: 10.1039/C6Sm01943A  0.79
2016 Ghosh S, Chakrabarti R. Spontaneous Unzipping of Xylonucleic Acid Assisted by a Single-Walled Carbon Nanotube: a Computational Study. The Journal of Physical Chemistry. B. PMID 27046289 DOI: 10.1021/Acs.Jpcb.6B02035  0.605
2016 Ghosh S, Patel N, Chakrabarti R. Correction to "Probing the Salt Concentration Dependent Nucleobase Distribution in a Single-Stranded DNA-Single-Walled Carbon Nanotube Hybrid with Molecular Dynamics". The Journal of Physical Chemistry. B. PMID 26935974 DOI: 10.1021/Acs.Jpcb.6B01729  0.763
2016 Samanta N, Chakrabarti R. Chain reconfiguration in active noise J. Phys. a: Math & Theo.. 49: 195601. DOI: 10.1088/1751-8113/49/19/195601  0.788
2016 Samanta N, Chakrabarti R. How does the tail length and the separation between the tagged monomers influence the reconfiguration of a chain with internal friction for different solvent-quality? J. Phys : Conf. Ser. 759: 012014. DOI: 10.1088/1742-6596/759/1/012014  0.771
2016 Ghosh S, Dixit M K, Chakrabarti R. Thermodynamics of site specific small molecular ion interaction with DNA duplex : a molecular dynamics study Mole. Simul.. 42: 715. DOI: 10.1080/08927022.2015.1085123  0.616
2016 Ghosh S, Chakrabarti R. Molecular dynamics simulation elucidates the preferential binding affinity of sodium and tetramethylammonium ions for tetrameric Nafion unit under aqueous conditions Rsc Advances. 6: 97961-97968. DOI: 10.1039/C6Ra21845H  0.615
2016 Ghosh S, Chakrabarti R. Unzipping of Double-Stranded Ribonucleic Acids by Graphene and Single-Walled Carbon Nanotube: Helix Geometry versus Surface Curvature J. Phys. Chem. C. 120: 22681. DOI: 10.1021/Acs.Jpcc.6B06943  0.605
2016 Samanta N, Chakrabarti R. Reconfiguration Dynamics in folded and intrinsically disordered protein with internal friction: Effect of solvent quality and denaturant Physica A. 450: 165. DOI: 10.1016/J.Physa.2015.12.147  0.788
2015 Ghosh S, Patel N, Chakrabarti R. Probing the Salt Concentration Dependent Nucleobase Distributions in a Single Stranded DNA-Single-Walled Carbon Nanotube Hybrid with Molecular Dynamics. The Journal of Physical Chemistry. B. PMID 26716359 DOI: 10.1021/acs.jpcb.5b12044  0.764
2015 Samanta N, Chakrabarti R. Looping Dynamics of a flexible chain with internal friction at different degrees of compactness Physica A. 437: 377. DOI: 10.1016/J.Physa.2015.05.042  0.807
2015 Ghosh S, Dixit H, Chakrabarti R. Ion assisted structural collapse of a single stranded DNA: a molecular dynamics approach Chem. Phys.. 459: 137. DOI: 10.1016/J.Chemphys.2015.07.038  0.637
2014 Samanta N, Ghosh J, Chakrabarti R. Looping and reconfiguration dynamics of a flexible chain with internal friction Aip Adv.. 4: 067102. DOI: 10.1063/1.4881416  0.8
2014 Chakrabarti R, Debnath A, Sebastian KL. Diffusion in an elastic medium: A model for macromolecule transport across the nuclear pore complex Physica a: Statistical Mechanics and Its Applications. 404: 65-78. DOI: 10.1016/J.Physa.2014.02.059  0.769
2013 Chakrabarti R, Kesselheim S, Košovan P, Holm C. Tracer diffusion in a crowded cylindrical channel. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 87: 062709. PMID 23848717 DOI: 10.1103/Physreve.87.062709  0.763
2013 Samanta N, Chakrabarti R. End to end loop formation in a single polymer chain with internal friction Chem. Phys. Letts.. 582: 71. DOI: 10.1016/J.Cplett.2013.07.039  0.793
2013 Samanta N, Chakrabarti R. End to end loop formation in a single polymer chain with internal friction Chemical Physics Letters. 582: 71-77. DOI: 10.1016/j.cplett.2013.07.039  0.775
2012 Chakrabarti R. Dynamics of end-to-end loop formation for an isolated chain in viscoelastic fluid Physica A. 391: 5236. DOI: 10.1016/J.Physa.2012.06.025  0.419
2012 Chakrabarti R. Dynamics of end-to-end loop formation: A flexible chain in the presence of hydrodynamic interaction Physica A. 391: 4081. DOI: 10.1016/J.Physa.2012.03.025  0.429
2011 Chakrabarti R, Delannoy JY, Couty M, Schweizer KS. Packing correlations, collective scattering and compressibility of fractal-like aggregates in polymer nanocomposites and suspensions Soft Matter. 7: 5397-5407. DOI: 10.1039/C1Sm05021D  0.59
2011 Chakrabarti R. Bubble dynamics in double stranded DNA: A Rouse chain based approach Chem. Phys. Letts.. 502: 107. DOI: 10.1016/J.Cplett.2010.12.014  0.456
2010 Chakrabarti R, Schweizer KS. Polymer-mediated spatial organization of nanoparticles in dense melts: Transferability and an effective one-component approach. The Journal of Chemical Physics. 133: 144905. PMID 20950039 DOI: 10.1063/1.3501358  0.568
2010 Chakrabarti R. Dynamical disorder in presence of exponential sink Chemical Physics Letters. 495: 60-62. DOI: 10.1016/J.Cplett.2010.06.076  0.401
2009 Chakrabarti R, Sebastian KL. A lower bound to the survival probability and an approximate first passage time distribution for Markovian and non-Markovian dynamics in phase space. The Journal of Chemical Physics. 131: 224504. PMID 20001054 DOI: 10.1063/1.3269613  0.702
2006 Debnath A, Chakrabarti R, Sebastian KL. Rate processes with dynamical disorder: a direct variational approach. The Journal of Chemical Physics. 124: 204111. PMID 16774323 DOI: 10.1063/1.2200695  0.761
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