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Andrew Kitchen, Ph.D. - Publications

Affiliations: 
2008 University of Florida, Gainesville, Gainesville, FL, United States 
Area:
Physical Anthropology, Genetics, Demography, Linguistics Language
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kim S, Carrel M, Kitchen A. Spatial genetic structure of 2009 H1N1 pandemic influenza established as a result of interaction with human populations in mainland China. Plos One. 18: e0284716. PMID 37196010 DOI: 10.1371/journal.pone.0284716  0.3
2020 Villanea FA, Kitchen A, Kemp BM. Applications of Bayesian Skyline Plots and Approximate Bayesian Computation for Human Demography. Human Biology. 91: 279-296. PMID 32767897 DOI: 10.13110/Humanbiology.91.4.04  0.358
2019 Cox AJ, Grady F, Velez G, Mahajan VB, Ferguson PJ, Kitchen A, Darbro BW, Bassuk AG. In trans variant calling reveals enrichment for compound heterozygous variants in genes involved in neuronal development and growth. Genetics Research. 101: e8. PMID 31190668 DOI: 10.1017/S0016672319000065  0.307
2019 O'Neill MB, Shockey A, Zarley A, Aylward W, Eldholm V, Kitchen A, Pepperell CS. Lineage specific histories of Mycobacterium tuberculosis dispersal in Africa and Eurasia. Molecular Ecology. PMID 31066139 DOI: 10.1111/Mec.15120  0.315
2018 Brynildsrud OB, Pepperell CS, Suffys P, Grandjean L, Monteserin J, Debech N, Bohlin J, Alfsnes K, Pettersson JO, Kirkeleite I, Fandinho F, da Silva MA, Perdigao J, Portugal I, Viveiros M, ... ... Kitchen A, et al. Global expansion of lineage 4 shaped by colonial migration and local adaptation. Science Advances. 4: eaat5869. PMID 30345355 DOI: 10.1126/Sciadv.Aat5869  0.33
2018 Young SG, Kitchen A, Kayali G, Carrel M. Unlocking pandemic potential: prevalence and spatial patterns of key substitutions in avian influenza H5N1 in Egyptian isolates. Bmc Infectious Diseases. 18: 314. PMID 29980172 DOI: 10.1186/S12879-018-3222-6  0.327
2018 Ní Leathlobhair M, Perri AR, Irving-Pease EK, Witt KE, Linderholm A, Haile J, Lebrasseur O, Ameen C, Blick J, Boyko AR, Brace S, Cortes YN, Crockford SJ, Devault A, Dimopoulos EA, ... ... Kitchen A, et al. The evolutionary history of dogs in the Americas. Science (New York, N.Y.). 361: 81-85. PMID 29976825 DOI: 10.1126/Science.Aao4776  0.395
2018 Jones CM, Lee Y, Kitchen A, Collier T, Pringle JC, Muleba M, Irish S, Stevenson JC, Coetzee M, Cornel AJ, Norris DE, Carpi G. Complete Anopheles funestus mitogenomes reveal an ancient history of mitochondrial lineages and their distribution in southern and central Africa. Scientific Reports. 8: 9054. PMID 29899497 DOI: 10.1038/S41598-018-27092-Y  0.487
2017 Duggan AT, Harris AJT, Marciniak S, Marshall I, Kuch M, Kitchen A, Renaud G, Southon J, Fuller B, Young J, Fiedel S, Golding GB, Grimes V, Poinar H. Genetic Discontinuity between the Maritime Archaic and Beothuk Populations in Newfoundland, Canada. Current Biology : Cb. PMID 29033326 DOI: 10.1016/J.Cub.2017.08.053  0.426
2017 Young SG, Carrel M, Kitchen A, Malanson GP, Tamerius J, Ali M, Kayali G. How's the Flu Getting Through? Landscape genetics suggests both humans and birds spread H5N1 in Egypt. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 28179143 DOI: 10.1016/J.Meegid.2017.02.005  0.37
2017 Devault AM, Mortimer TD, Kitchen A, Kiesewetter H, Enk JM, Golding GB, Southon J, Kuch M, Duggan AT, Aylward W, Gardner SN, Allen JE, King AM, Wright G, Kuroda M, et al. A molecular portrait of maternal sepsis from Byzantine Troy. Elife. 6. PMID 28072390 DOI: 10.7554/Elife.20983  0.333
2016 Eldholm V, Pettersson JH, Brynildsrud OB, Kitchen A, Rasmussen EM, Lillebaek T, Rønning JO, Crudu V, Mengshoel AT, Debech N, Alfsnes K, Bohlin J, Pepperell CS, Balloux F. Armed conflict and population displacement as drivers of the evolution and dispersal of Mycobacterium tuberculosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 27872285 DOI: 10.1073/Pnas.1611283113  0.366
2016 Carpi G, Walter KS, Mamoun CB, Krause PJ, Kitchen A, Lepore TJ, Dwivedi A, Cornillot E, Caccone A, Diuk-Wasser MA. Babesia microti from humans and ticks hold a genomic signature of strong population structure in the United States. Bmc Genomics. 17: 888. PMID 27821055 DOI: 10.1186/S12864-016-3225-X  0.351
2016 Carpi G, Kitchen A, Kim HL, Ratan A, Drautz-Moses DI, McGraw JJ, Kazimirova M, Rizzoli A, Schuster SC. Mitogenomes reveal diversity of the European Lyme borreliosis vector Ixodes ricinus in Italy. Molecular Phylogenetics and Evolution. PMID 27165938 DOI: 10.1016/J.Ympev.2016.05.009  0.486
2015 Vyas DN, Kitchen A, Miró-Herrans AT, Pearson LN, Al-Meeri A, Mulligan CJ. Bayesian analyses of Yemeni mitochondrial genomes suggest multiple migration events with Africa and Western Eurasia. American Journal of Physical Anthropology. PMID 26567083 DOI: 10.1002/Ajpa.22890  0.629
2015 Witt KE, Judd K, Kitchen A, Grier C, Kohler TA, Ortman SG, Kemp BM, Malhi RS. DNA analysis of ancient dogs of the Americas: identifying possible founding haplotypes and reconstructing population histories. Journal of Human Evolution. 79: 105-18. PMID 25532803 DOI: 10.1016/J.Jhevol.2014.10.012  0.478
2015 Kitchen A, Non AL, Gravlee CC, Mulligan CJ, Warinner C, Lewis CM, Bankoff RJ, Randrianatoandro HDD, Perry GH, Malhi RS, Bader AC, Raff J. Anthropological Genetics American Anthropologist. DOI: 10.1111/Aman.12364  0.572
2014 Qiu F, Kitchen A, Burleigh JG, Miyamoto MM. Scombroid fishes provide novel insights into the trait/rate associations of molecular evolution. Journal of Molecular Evolution. 78: 338-48. PMID 24810994 DOI: 10.1007/S00239-014-9621-4  0.317
2013 Pepperell CS, Casto AM, Kitchen A, Granka JM, Cornejo OE, Holmes EC, Holmes EC, Birren B, Galagan J, Feldman MW. The role of selection in shaping diversity of natural M. tuberculosis populations. Plos Pathogens. 9: e1003543. PMID 23966858 DOI: 10.1371/Journal.Ppat.1003543  0.377
2013 Qiu F, Kitchen A, Beerli P, Miyamoto MM. A possible explanation for the population size discrepancy in tuna (genus Thunnus) estimated from mitochondrial DNA and microsatellite data. Molecular Phylogenetics and Evolution. 66: 463-8. PMID 22579759 DOI: 10.1016/J.Ympev.2012.05.002  0.444
2013 Pepperell CS, Casto AM, Kitchen A, Granka JM, Cornejo OE, Holmes EC, Birren B, Galagan J, Feldman MW. Correction: The Role of Selection in Shaping Diversity of Natural M. tuberculosis Populations Plos Pathogens. 9. DOI: 10.1371/Annotation/Cff22061-44D5-4301-B853-41702D160203  0.309
2012 Holt KE, Baker S, Weill FX, Holmes EC, Kitchen A, Yu J, Sangal V, Brown DJ, Coia JE, Kim DW, Choi SY, Kim SH, da Silveira WD, Pickard DJ, Farrar JJ, et al. Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe. Nature Genetics. 44: 1056-9. PMID 22863732 DOI: 10.1038/Ng.2369  0.458
2012 Cook S, Moureau G, Kitchen A, Gould EA, de Lamballerie X, Holmes EC, Harbach RE. Molecular evolution of the insect-specific flaviviruses. The Journal of General Virology. 93: 223-34. PMID 22012464 DOI: 10.1099/Vir.0.036525-0  0.382
2011 Kitchen A, Shackelton LA, Holmes EC. Family level phylogenies reveal modes of macroevolution in RNA viruses. Proceedings of the National Academy of Sciences of the United States of America. 108: 238-43. PMID 21173251 DOI: 10.1073/Pnas.1011090108  0.317
2011 Toups MA, Kitchen A, Light JE, Reed DL. Origin of clothing lice indicates early clothing use by anatomically modern humans in Africa. Molecular Biology and Evolution. 28: 29-32. PMID 20823373 DOI: 10.1093/Molbev/Msq234  0.397
2010 Carpi G, Holmes EC, Kitchen A. The evolutionary dynamics of bluetongue virus. Journal of Molecular Evolution. 70: 583-92. PMID 20526713 DOI: 10.1007/S00239-010-9354-Y  0.372
2010 Firth C, Kitchen A, Shapiro B, Suchard MA, Holmes EC, Rambaut A. Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses Molecular Biology and Evolution. 27: 2038-2051. PMID 20363828 DOI: 10.1093/Molbev/Msq088  0.355
2010 Sall AA, Faye O, Diallo M, Firth C, Kitchen A, Holmes EC. Yellow fever virus exhibits slower evolutionary dynamics than dengue virus. Journal of Virology. 84: 765-72. PMID 19889759 DOI: 10.1128/Jvi.01738-09  0.398
2010 Jones A, Lowry K, Aaskov J, Holmes EC, Kitchen A. Molecular evolutionary dynamics of Ross River virus and implications for vaccine efficacy. The Journal of General Virology. 91: 182-8. PMID 19759236 DOI: 10.1099/Vir.0.014209-0  0.354
2009 Kerr PJ, Kitchen A, Holmes EC. Origin and phylodynamics of rabbit hemorrhagic disease virus. Journal of Virology. 83: 12129-38. PMID 19759153 DOI: 10.1128/Jvi.01523-09  0.423
2009 Kitchen A, Ehret C, Assefa S, Mulligan CJ. Bayesian phylogenetic analysis of Semitic languages identifies an Early Bronze Age origin of Semitic in the Near East. Proceedings. Biological Sciences / the Royal Society. 276: 2703-10. PMID 19403539 DOI: 10.1098/Rspb.2009.0408  0.601
2008 Mulligan CJ, Kitchen A, Miyamoto MM. Updated three-stage model for the peopling of the Americas Plos One. 3. PMID 18797500 DOI: 10.1371/Journal.Pone.0003199  0.661
2008 Kitchen A, Miyamoto MM, Mulligan CJ. A three-stage colonization model for the peopling of the Americas Plos One. 3. PMID 18270583 DOI: 10.1371/Journal.Pone.0001596  0.649
2008 Kitchen A, Miyamoto MM, Mulligan CJ. Utility of DNA viruses for studying human host history: Case study of JC virus Molecular Phylogenetics and Evolution. 46: 673-682. PMID 17977749 DOI: 10.1016/J.Ympev.2007.09.005  0.641
2007 Non AL, Kitchen A, Mulligan CJ. Identification of the most informative regions of the mitochondrial genome for phylogenetic and coalescent analyses Molecular Phylogenetics and Evolution. 44: 1164-1171. PMID 17317224 DOI: 10.1016/J.Ympev.2006.12.020  0.617
2006 Mulligan CJ, Kitchen A, Miyamoto MM. Comment on "Population size does not influence mitochondrial genetic diversity in animals" Science. 314: 1390. PMID 17138883 DOI: 10.1126/Science.1132585  0.63
2006 Gray RR, Mulligan CJ, Molini BJ, Sun ES, Giacani L, Godornes C, Kitchen A, Lukehart SA, Centurion-Lara A. Molecular evolution of the tprC, D, I, K, G, and J genes in the pathogenic genus Treponema. Molecular Biology and Evolution. 23: 2220-33. PMID 16926243 DOI: 10.1093/Molbev/Msl092  0.661
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