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Prabodhika Mallikaratchy, Ph.D. - Publications

Affiliations: 
2007 University of Florida, Gainesville, Gainesville, FL, United States 
Area:
Analytical Chemistry, Biochemistry
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Williams N, Patel R, Mallikaratchy P. Discovery of Aptamers Against Cell Surface Markers Using Ligand-Guided Selection. Methods in Molecular Biology (Clifton, N.J.). 2570: 13-38. PMID 36156771 DOI: 10.1007/978-1-0716-2695-5_2  0.438
2022 Williams NB, Batool S, Zumrut HE, Patel R, Sosa G, Jamal M, Mallikaratchy P. An Selection Platform to Identify Multiple Aptamers against Multiple Cell-Surface Markers Using Ligand-Guided Selection. Biochemistry. PMID 35829681 DOI: 10.1021/acs.biochem.2c00105  0.353
2021 Boykoff N, Freage L, Lenn J, Mallikaratchy P. Bispecific Aptamer Sensor toward T-Cell Leukemia Detection in the Tumor Microenvironment. Acs Omega. 6: 32563-32570. PMID 34901605 DOI: 10.1021/acsomega.1c04125  0.408
2020 Zumrut HE, Mallikaratchy PR. Ligand Guided Selection (LIGS) of Artificial Nucleic Acid Ligands against Cell Surface Targets. Acs Applied Bio Materials. 3: 2545-2552. PMID 34013167 DOI: 10.1021/acsabm.9b00938  0.399
2020 Freage L, Jamal D, Williams NB, Mallikaratchy PR. A Homodimeric Aptamer Variant Generated from Ligand-Guided Selection Activates the T Cell Receptor Cluster of Differentiation 3 Complex. Molecular Therapy. Nucleic Acids. 22: 167-178. PMID 32920262 DOI: 10.1016/j.omtn.2020.08.016  0.319
2019 Zumrut H, Yang Z, Williams N, Arizala JDR, Batool S, Benner S, Mallikaratchy P. Ligand Guided Selection (LIGS) with Artificially Expanded Genetic Information Systems against TCR-CD3ε. Biochemistry. PMID 31880917 DOI: 10.1021/Acs.Biochem.9B00919  0.434
2019 Zumrut HE, Batool S, Argyropoulos KV, Williams N, Azad R, Mallikaratchy PR. Integrating Ligand-Receptor Interactions and In Vitro Evolution for Streamlined Discovery of Artificial Nucleic Acid Ligands. Molecular Therapy. Nucleic Acids. 17: 150-163. PMID 31255977 DOI: 10.1016/j.omtn.2019.05.015  0.385
2019 Moccia F, Platella C, Musumeci D, Batool S, Zumrut H, Bradshaw J, Mallikaratchy P, Montesarchio D. The role of G-quadruplex structures of LIGS-generated aptamers R1.2 and R1.3 in IgM specific recognition. International Journal of Biological Macromolecules. PMID 31022491 DOI: 10.1016/J.Ijbiomac.2019.04.141  0.339
2018 Batool S, Argyropoulos KV, Azad R, Okeoma P, Zumrut H, Bhandari S, Dekhang R, Mallikaratchy PR. Dimerization of an aptamer generated from Ligand-guided selection (LIGS) yields a high affinity scaffold against B-cells. Biochimica Et Biophysica Acta. General Subjects. PMID 30342154 DOI: 10.1016/j.bbagen.2018.10.006  0.445
2017 Batool S, Bhandari S, George S, Okeoma P, Van N, Zümrüt HE, Mallikaratchy P. Engineered Aptamers to Probe Molecular Interactions on the Cell Surface. Biomedicines. 5. PMID 28850067 DOI: 10.3390/Biomedicines5030054  0.516
2017 Zümrüt HE, Batool S, Van N, George S, Bhandari S, Mallikaratchy P. Structural optimization of an aptamer generated from Ligand-Guided Selection (LIGS) resulted in high affinity variant toward mIgM expressed on Burkitt's lymphoma cell lines. Biochimica Et Biophysica Acta. PMID 28363693 DOI: 10.1016/J.Bbagen.2017.03.020  0.503
2017 Mallikaratchy P. Evolution of Complex Target SELEX to Identify Aptamers against Mammalian Cell-Surface Antigens. Molecules (Basel, Switzerland). 22. PMID 28146093 DOI: 10.3390/molecules22020215  0.392
2016 Zumrut HE, Ara MN, Maio GE, Van NA, Batool S, Mallikaratchy PR. Ligand-guided selection of aptamers against T-cell Receptor-cluster of differentiation 3 (TCR-CD3) expressed on Jurkat.E6 cells. Analytical Biochemistry. PMID 27519622 DOI: 10.1016/j.ab.2016.08.007  0.422
2016 Zumrut HE, Ara MN, Fraile M, Maio G, Mallikaratchy P. Ligand-Guided Selection of Target-Specific Aptamers: A Screening Technology for Identifying Specific Aptamers Against Cell-Surface Proteins. Nucleic Acid Therapeutics. PMID 27148897 DOI: 10.1089/Nat.2016.0611  0.555
2013 Mallikaratchy P, Gardner J, Nordstrøm LU, Veomett NJ, McDevitt MR, Heaney ML, Scheinberg DA. A self-assembling short oligonucleotide duplex suitable for pretargeting. Nucleic Acid Therapeutics. 23: 289-99. PMID 23848521 DOI: 10.1089/Nat.2013.0425  0.404
2011 Mallikaratchy PR, Ruggiero A, Gardner JR, Kuryavyi V, Maguire WF, Heaney ML, McDevitt MR, Patel DJ, Scheinberg DA. A multivalent DNA aptamer specific for the B-cell receptor on human lymphoma and leukemia. Nucleic Acids Research. 39: 2458-69. PMID 21030439 DOI: 10.1093/Nar/Gkq996  0.438
2010 Tang Z, Zhu Z, Mallikaratchy P, Yang R, Sefah K, Tan W. Aptamer-target binding triggered molecular mediation of singlet oxygen generation. Chemistry, An Asian Journal. 5: 783-6. PMID 20340154 DOI: 10.1002/Asia.200900545  0.662
2009 Mallikaratchy P, Liu H, Huang YF, Wang H, Lopez-Colon D, Tan W. Using aptamers evolved from cell-SELEX to engineer a molecular delivery platform. Chemical Communications (Cambridge, England). 3056-8. PMID 19462085 DOI: 10.1039/B823258J  0.671
2009 Mallikaratchy P, Ruggiero A, Maguire W, Piersanti K, Gardner J, Villa C, Escorcia F, Palomba ML, Heaney M, McDevitt MR, Scheinberg DA. Multivalent DNA Aptamer-Based Therapeutic Agents for Lymphoma and Leukemia. Blood. 114: 2711-2711. DOI: 10.1182/Blood.V114.22.2711.2711  0.423
2008 Tang Z, Mallikaratchy P, Yang R, Kim Y, Zhu Z, Wang H, Tan W. Aptamer switch probe based on intramolecular displacement. Journal of the American Chemical Society. 130: 11268-9. PMID 18680291 DOI: 10.1021/Ja804119S  0.613
2008 Shangguan D, Cao Z, Meng L, Mallikaratchy P, Sefah K, Wang H, Li Y, Tan W. Cell-specific aptamer probes for membrane protein elucidation in cancer cells. Journal of Proteome Research. 7: 2133-9. PMID 18363322 DOI: 10.1021/Pr700894D  0.69
2008 Mallikaratchy P, Tang Z, Tan W. Cell specific aptamer-photosensitizer conjugates as a molecular tool in photodynamic therapy. Chemmedchem. 3: 425-8. PMID 18058891 DOI: 10.1002/Cmdc.200700260  0.69
2007 Mallikaratchy P, Tang Z, Kwame S, Meng L, Shangguan D, Tan W. Aptamer directly evolved from live cells recognizes membrane bound immunoglobin heavy mu chain in Burkitt's lymphoma cells. Molecular & Cellular Proteomics : McP. 6: 2230-8. PMID 17875608 DOI: 10.1074/Mcp.M700026-Mcp200  0.711
2007 Shangguan D, Tang Z, Mallikaratchy P, Xiao Z, Tan W. Optimization and modifications of aptamers selected from live cancer cell lines. Chembiochem : a European Journal of Chemical Biology. 8: 603-6. PMID 17373017 DOI: 10.1002/Cbic.200600532  0.446
2006 Mallikaratchy P, Stahelin RV, Cao Z, Cho W, Tan W. Selection of DNA ligands for protein kinase C-delta. Chemical Communications (Cambridge, England). 3229-31. PMID 17028752 DOI: 10.1039/B604778E  0.53
2006 Shangguan D, Li Y, Tang Z, Cao ZC, Chen HW, Mallikaratchy P, Sefah K, Yang CJ, Tan W. Aptamers evolved from live cells as effective molecular probes for cancer study. Proceedings of the National Academy of Sciences of the United States of America. 103: 11838-43. PMID 16873550 DOI: 10.1073/Pnas.0602615103  0.712
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