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Ying Ge - Publications

Affiliations: 
Chemistry University of Wisconsin, Madison, Madison, WI 
Area:
proteomics and metabolomics
Website:
http://www.chem.wisc.edu/users/yge
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67 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhang A, Sun R, Ran M, Deng Y, Ge Y, Zhu Y, Tao X, Shang L, Gou J, He H, Yin T, Wang Y, Zhang Y, Tang X. A Novel Eyes Topical Drug Delivery System: CsA-LNC for the Treatment of DED. Pharmaceutical Research. 37: 146. PMID 32666340 DOI: 10.1007/s11095-020-02872-2  0.44
2020 Sun R, Zhang A, Ge Y, Gou J, Yin T, He H, Wang Y, Zhang G, Kong J, Shang L, Tao X, Zhang Y, Tang X. Ultra-small-size Astragaloside-IV loaded lipid nanocapsules eye drops for the effective management of dry age-related macular degeneration. Expert Opinion On Drug Delivery. PMID 32538226 DOI: 10.1080/17425247.2020.1783236  0.44
2020 Ge Y, Zhang A, Sun R, Xu J, Yin T, He H, Gou J, Kong J, Zhang Y, Tang X. Penetratin modified lutein nanoemulsion gel for the treatment of age-related macular degeneration. Expert Opinion On Drug Delivery. PMID 32105151 DOI: 10.1080/17425247.2020.1735348  0.44
2019 Xu J, Ge Y, Bu R, Zhang A, Feng S, Wang J, Gou J, Yin T, He H, Zhang Y, Tang X. Co-delivery of latanoprost and timolol from micelles-laden contact lenses for the treatment of glaucoma. Journal of Controlled Release : Official Journal of the Controlled Release Society. PMID 31103677 DOI: 10.1016/j.jconrel.2019.05.025  0.44
2019 Pang C, Zhu C, Zhang Y, Ge Y, Li S, Huo S, Xu T, Stauber RH, Zhao B. Title: 2,3,7,8-tetrachloodibenzo-p-dioxin affects the differentiation of CD4 helper T cell. Toxicology Letters. PMID 31014974 DOI: 10.1016/j.toxlet.2019.04.015  0.44
2019 Xu S, Wang G, Peng W, Xu Y, Zhang Y, Ge Y, Jing Y, Gong Z. Corosolic acid isolated from Eriobotrya japonica leaves reduces glucose level in human hepatocellular carcinoma cells, zebrafish and rats. Scientific Reports. 9: 4388. PMID 30867526 DOI: 10.1038/s41598-019-40934-7  0.44
2019 Liang Y, Jin Y, Wu Z, Tucholski T, Brown KA, Zhang L, Zhang Y, Ge Y. Bridged Hybrid Monolithic Column Coupled to High-Resolution Mass Spectrometry for Top-down Proteomics. Analytical Chemistry. PMID 30668094 DOI: 10.1021/acs.analchem.8b05817  0.44
2018 Chen C, Xiang Y, Yang KW, Zhang Y, Wang WM, Su JP, Ge Y, Liu Y. A protein structure-guided covalent scaffold selectively targets the B1 and B2 subclass metallo-β-lactamases. Chemical Communications (Cambridge, England). PMID 29687124 DOI: 10.1039/c8cc01067f  0.44
2017 Fan S, Ren H, Wei Y, Mao C, Ma Z, Zhang L, Wang L, Ge Y, Li T, Cui L, Wu H, Guan H. Next-generation sequencing of the cerebrospinal fluid in the diagnosis of neurobrucellosis. International Journal of Infectious Diseases : Ijid : Official Publication of the International Society For Infectious Diseases. PMID 29196276 DOI: 10.1016/j.ijid.2017.11.028  0.44
2017 Yang KW, Zhou Y, Ge Y, Zhang Y. Real-time activity monitoring of New Delhi metallo-β-lactamase-1 in living bacterial cells by UV-Vis spectroscopy. Chemical Communications (Cambridge, England). PMID 28664213 DOI: 10.1039/c7cc02774e  0.44
2016 Cai W, Tucholski TM, Gregorich ZR, Ge Y. Top-down Proteomics for Comprehensive Analysis of Protein Isoforms and Modifications: Technology Advancements and Applications to Heart Diseases. Expert Review of Proteomics. PMID 27448560 DOI: 10.1080/14789450.2016.1209414  0.52
2016 Gregorich ZR, Peng Y, Cai W, Jin Y, Wei L, Chen AJ, McKiernan SH, Aiken JM, Moss RL, Diffee GM, Ge Y. Top-down Targeted Proteomics Reveals Decrease in Myosin Regulatory Light Chain Phosphorylation that Contributes to Sarcopenic Muscle Dysfunction. Journal of Proteome Research. PMID 27362462 DOI: 10.1021/acs.jproteome.6b00244  0.52
2016 Jin Y, Peng Y, Lin Z, Chen YC, Wei L, Hacker TA, Larsson L, Ge Y. Comprehensive analysis of tropomyosin isoforms in skeletal muscles by top-down proteomics. Journal of Muscle Research and Cell Motility. PMID 27090236 DOI: 10.1007/s10974-016-9443-7  0.52
2016 Hwang L, Guardado-Alvarez TM, Ayaz-Gunner S, Ge Y, Jin S. A Family of Photolabile Nitroveratryl-Based Surfactants That Self-Assemble into Photodegradable Supramolecular Structures. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 27046005 DOI: 10.1021/acs.langmuir.6b00658  0.52
2016 Chen B, Peng Y, Valeja SG, Xiu L, Alpert AJ, Ge Y. Online Hydrophobic Interaction Chromatography-Mass spectrometry for Top-down Proteomics. Analytical Chemistry. PMID 26729044 DOI: 10.1021/acs.analchem.5b04285  0.52
2015 Ge Y, Li T. [The middle east respiratory syndrome-we are concerned but no panic]. Zhonghua Nei Ke Za Zhi. 54: 825-826. PMID 26675017  0.44
2015 Cai W, Guner H, Gregorich ZR, Chen AJ, Ayaz-Guner S, Peng Y, Valeja SG, Liu X, Ge Y. MASH Suite Pro: A Comprehensive Software Tool for Top-down Proteomics. Molecular & Cellular Proteomics : McP. PMID 26598644 DOI: 10.1074/mcp.O115.054387  0.52
2015 Yu D, Peng Y, Ayaz-Guner S, Gregorich ZR, Ge Y. Comprehensive Characterization of AMP-Activated Protein Kinase Catalytic Domain by Top-Down Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 26489410 DOI: 10.1007/s13361-015-1286-8  0.52
2015 Chang YH, Ye L, Cai W, Lee Y, Guner H, Lee Y, Kamp TJ, Zhang J, Ge Y. Quantitative Proteomics Reveals Differential Regulation of Protein Expression in Recipient Myocardium after Trilineage Cardiovascular Cell Transplantation. Proteomics. PMID 26033914 DOI: 10.1002/pmic.201500131  0.52
2015 Valeja SG, Xiu L, Gregorich ZR, Guner H, Jin S, Ge Y. Three dimensional liquid chromatography coupling ion exchange chromatography/hydrophobic interaction chromatography/reverse phase chromatography for effective protein separation in top-down proteomics. Analytical Chemistry. 87: 5363-71. PMID 25867201 DOI: 10.1021/acs.analchem.5b00657  0.52
2015 Hwang L, Ayaz-Guner S, Gregorich ZR, Cai W, Valeja SG, Jin S, Ge Y. Specific enrichment of phosphoproteins using functionalized multivalent nanoparticles. Journal of the American Chemical Society. 137: 2432-5. PMID 25655481 DOI: 10.1021/ja511833y  0.52
2015 Chen YC, Sumandea MP, Larsson L, Moss RL, Ge Y. Dissecting human skeletal muscle troponin proteoforms by top-down mass spectrometry. Journal of Muscle Research and Cell Motility. 36: 169-81. PMID 25613324 DOI: 10.1007/s10974-015-9404-6  0.52
2015 Chang YH, Gregorich ZR, Chen AJ, Hwang L, Guner H, Yu D, Zhang J, Ge Y. New mass-spectrometry-compatible degradable surfactant for tissue proteomics. Journal of Proteome Research. 14: 1587-99. PMID 25589168 DOI: 10.1021/pr5012679  0.52
2015 Chen YC, Ayaz-Guner S, Peng Y, Lane NM, Locher MR, Kohmoto T, Larsson L, Moss RL, Ge Y. Effective Top-Down LC/MS+ Method for Assessing Actin Isoforms as a Potential Cardiac Disease Marker Analytical Chemistry. 87: 8399-8406. DOI: 10.1021/acs.analchem.5b01745  0.52
2014 Valkevich EM, Sanchez NA, Ge Y, Strieter ER. Middle-down mass spectrometry enables characterization of branched ubiquitin chains. Biochemistry. 53: 4979-89. PMID 25023374 DOI: 10.1021/bi5006305  0.52
2014 Peng Y, Gregorich ZR, Valeja SG, Zhang H, Cai W, Chen YC, Guner H, Chen AJ, Schwahn DJ, Hacker TA, Liu X, Ge Y. Top-down proteomics reveals concerted reductions in myofilament and Z-disc protein phosphorylation after acute myocardial infarction. Molecular & Cellular Proteomics : McP. 13: 2752-64. PMID 24969035 DOI: 10.1074/mcp.M114.040675  0.52
2014 Xiu L, Valeja SG, Alpert AJ, Jin S, Ge Y. Effective protein separation by coupling hydrophobic interaction and reverse phase chromatography for top-down proteomics. Analytical Chemistry. 86: 7899-906. PMID 24968279 DOI: 10.1021/ac501836k  0.52
2014 Peng Y, Ayaz-Guner S, Yu D, Ge Y. Top-down mass spectrometry of cardiac myofilament proteins in health and disease. Proteomics. Clinical Applications. 8: 554-68. PMID 24945106 DOI: 10.1002/prca.201400043  0.52
2014 Zheng S, Dong Y, Miao Y, Liu A, Zhang X, Wang B, Ge Y, Liu Y, Wang S. Differentiation of osteolytic metastases and Schmorl's nodes in cancer patients using dual-energy CT: advantage of spectral CT imaging. European Journal of Radiology. 83: 1216-21. PMID 24820064 DOI: 10.1016/j.ejrad.2014.02.003  0.44
2014 Gregorich ZR, Ge Y. Top-down proteomics in health and disease: challenges and opportunities. Proteomics. 14: 1195-210. PMID 24723472 DOI: 10.1002/pmic.201300432  0.52
2014 Gregorich ZR, Chang YH, Ge Y. Proteomics in heart failure: top-down or bottom-up? PflüGers Archiv : European Journal of Physiology. 466: 1199-209. PMID 24619480 DOI: 10.1007/s00424-014-1471-9  0.52
2014 Witayavanitkul N, Ait Mou Y, Kuster DW, Khairallah RJ, Sarkey J, Govindan S, Chen X, Ge Y, Rajan S, Wieczorek DF, Irving T, Westfall MV, de Tombe PP, Sadayappan S. Myocardial infarction-induced N-terminal fragment of cardiac myosin-binding protein C (cMyBP-C) impairs myofilament function in human myocardium. The Journal of Biological Chemistry. 289: 8818-27. PMID 24509847 DOI: 10.1074/jbc.M113.541128  0.52
2014 Chen S, Zhu P, Guo HM, Solis RS, Wang Y, Ma Y, Wang J, Gao J, Chen JM, Ge Y, Zhuang J, Li J. Alpha1 catalytic subunit of AMPK modulates contractile function of cardiomyocytes through phosphorylation of troponin I. Life Sciences. 98: 75-82. PMID 24447627 DOI: 10.1016/j.lfs.2014.01.006  0.52
2014 Guner H, Close PL, Cai W, Zhang H, Peng Y, Gregorich ZR, Ge Y. MASH Suite: a user-friendly and versatile software interface for high-resolution mass spectrometry data interpretation and visualization. Journal of the American Society For Mass Spectrometry. 25: 464-70. PMID 24385400 DOI: 10.1007/s13361-013-0789-4  0.52
2014 Zhang Y, Vastenhouw NL, Feng J, Fu K, Wang C, Ge Y, Pauli A, van Hummelen P, Schier AF, Liu XS. Canonical nucleosome organization at promoters forms during genome activation. Genome Research. 24: 260-6. PMID 24285721 DOI: 10.1101/gr.157750.113  0.44
2013 Zhao DS, Gregorich ZR, Ge Y. High throughput screening of disulfide-containing proteins in a complex mixture. Proteomics. 13: 3256-60. PMID 24030959 DOI: 10.1002/pmic.201300242  0.52
2013 Peng Y, Yu D, Gregorich Z, Chen X, Beyer AM, Gutterman DD, Ge Y. In-depth proteomic analysis of human tropomyosin by top-down mass spectrometry. Journal of Muscle Research and Cell Motility. 34: 199-210. PMID 23881156 DOI: 10.1007/s10974-013-9352-y  0.52
2013 Miao J, Lawrence M, Jeffers V, Zhao F, Parker D, Ge Y, Sullivan WJ, Cui L. Extensive lysine acetylation occurs in evolutionarily conserved metabolic pathways and parasite-specific functions during Plasmodium falciparum intraerythrocytic development. Molecular Microbiology. 89: 660-75. PMID 23796209 DOI: 10.1111/mmi.12303  0.52
2013 Chen X, Ge Y. Ultrahigh pressure fast size exclusion chromatography for top-down proteomics. Proteomics. 13: 2563-6. PMID 23794208 DOI: 10.1002/pmic.201200594  0.52
2013 Yuan S, Xu J, Ge Y, Yan Z, Du G, Wang N. Prokaryotic ubiquitin-like ThiS fusion enhances the heterologous protein overexpression and aggregation in Escherichia coli. Plos One. 8: e62529. PMID 23638106 DOI: 10.1371/journal.pone.0062529  0.52
2013 Peng Y, Chen X, Zhang H, Xu Q, Hacker TA, Ge Y. Top-down targeted proteomics for deep sequencing of tropomyosin isoforms. Journal of Proteome Research. 12: 187-98. PMID 23256820 DOI: 10.1021/pr301054n  0.52
2013 Guy MJ, Chen YC, Clinton L, Zhang H, Zhang J, Dong X, Xu Q, Ayaz-Guner S, Ge Y. The impact of antibody selection on the detection of cardiac troponin I. Clinica Chimica Acta; International Journal of Clinical Chemistry. 420: 82-8. PMID 23107929 DOI: 10.1016/j.cca.2012.10.034  0.52
2012 Trang VH, Valkevich EM, Minami S, Chen YC, Ge Y, Strieter ER. Nonenzymatic polymerization of ubiquitin: single-step synthesis and isolation of discrete ubiquitin oligomers. Angewandte Chemie (International Ed. in English). 51: 13085-8. PMID 23161800 DOI: 10.1002/anie.201207171  0.52
2012 Yang C, Park AC, Davis NA, Russell JD, Kim B, Brand DD, Lawrence MJ, Ge Y, Westphall MS, Coon JJ, Greenspan DS. Comprehensive mass spectrometric mapping of the hydroxylated amino acid residues of the α1(V) collagen chain. The Journal of Biological Chemistry. 287: 40598-610. PMID 23060441 DOI: 10.1074/jbc.M112.406850  0.52
2012 Jia C, Hui L, Cao W, Lietz CB, Jiang X, Chen R, Catherman AD, Thomas PM, Ge Y, Kelleher NL, Li L. High-definition de novo sequencing of crustacean hyperglycemic hormone (CHH)-family neuropeptides. Molecular & Cellular Proteomics : McP. 11: 1951-64. PMID 23028060 DOI: 10.1074/mcp.M112.020537  0.52
2012 Ge Y, Moss RL. Nitroxyl, redox switches, cardiac myofilaments, and heart failure: a prequel to novel therapeutics? Circulation Research. 111: 954-6. PMID 23023505 DOI: 10.1161/CIRCRESAHA.112.278416  0.52
2012 Xu H, Ren X, Du Y, Zhang L, Li T, Ge Y, Wang H. [Study on absorption kinetics of betulic acid in rat's intestines]. Zhongguo Zhong Yao Za Zhi = Zhongguo Zhongyao Zazhi = China Journal of Chinese Materia Medica. 37: 377-80. PMID 22568244  0.44
2012 Valkevich EM, Guenette RG, Sanchez NA, Chen YC, Ge Y, Strieter ER. Forging isopeptide bonds using thiol-ene chemistry: site-specific coupling of ubiquitin molecules for studying the activity of isopeptidases. Journal of the American Chemical Society. 134: 6916-9. PMID 22497214 DOI: 10.1021/ja300500a  0.52
2012 Qin B, Zhou M, Ge Y, Taing L, Liu T, Wang Q, Wang S, Chen J, Shen L, Duan X, Hu S, Li W, Long H, Zhang Y, Liu XS. CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human. Bioinformatics (Oxford, England). 28: 1411-2. PMID 22495751 DOI: 10.1093/bioinformatics/bts157  0.44
2012 Du J, Teng RJ, Lawrence M, Guan T, Xu H, Ge Y, Shi Y. The protein partners of GTP cyclohydrolase I in rat organs. Plos One. 7: e33991. PMID 22479495 DOI: 10.1371/journal.pone.0033991  0.52
2012 Oliveira SM, Zhang YH, Solis RS, Isackson H, Bellahcene M, Yavari A, Pinter K, Davies JK, Ge Y, Ashrafian H, Walker JW, Carling D, Watkins H, Casadei B, Redwood C. AMP-activated protein kinase phosphorylates cardiac troponin I and alters contractility of murine ventricular myocytes. Circulation Research. 110: 1192-201. PMID 22456184 DOI: 10.1161/CIRCRESAHA.111.259952  0.52
2012 Peng Y, Chen X, Sato T, Rankin SA, Tsuji RF, Ge Y. Purification and high-resolution top-down mass spectrometric characterization of human salivary α-amylase. Analytical Chemistry. 84: 3339-46. PMID 22390166 DOI: 10.1021/ac300083y  0.52
2012 Wang Y, Pinto JR, Solis RS, Dweck D, Liang J, Diaz-Perez Z, Ge Y, Walker JW, Potter JD. Generation and functional characterization of knock-in mice harboring the cardiac troponin I-R21C mutation associated with hypertrophic cardiomyopathy. The Journal of Biological Chemistry. 287: 2156-67. PMID 22086914 DOI: 10.1074/jbc.M111.294306  0.52
2012 Dong X, Sumandea CA, Chen YC, Garcia-Cazarin ML, Zhang J, Balke CW, Sumandea MP, Ge Y. Augmented phosphorylation of cardiac troponin I in hypertensive heart failure Journal of Biological Chemistry. 287: 848-857. PMID 22052912 DOI: 10.1074/jbc.M111.293258  0.52
2011 Zhang J, Zhang H, Ayaz-Guner S, Chen YC, Dong X, Xu Q, Ge Y. Phosphorylation, but not alternative splicing or proteolytic degradation, is conserved in human and mouse cardiac troponin T. Biochemistry. 50: 6081-92. PMID 21639091 DOI: 10.1021/bi2006256  0.52
2011 Sancho Solis R, Ge Y, Walker JW. A preferred AMPK phosphorylation site adjacent to the inhibitory loop of cardiac and skeletal troponin I. Protein Science : a Publication of the Protein Society. 20: 894-907. PMID 21416543 DOI: 10.1002/pro.623  0.52
2011 Wang Y, Xu H, Wu X, Zhu Y, Gu B, Niu X, Liu A, Peng C, Ge Y, Chang J. Quantification of net carbon flux from plastic greenhouse vegetable cultivation: a full carbon cycle analysis. Environmental Pollution (Barking, Essex : 1987). 159: 1427-34. PMID 21277056 DOI: 10.1016/j.envpol.2010.12.031  0.44
2010 Zhang J, Dong X, Hacker TA, Ge Y. Deciphering modifications in swine cardiac troponin I by top-down high-resolution tandem mass spectrometry. Journal of the American Society For Mass Spectrometry. 21: 940-8. PMID 20223681 DOI: 10.1016/j.jasms.2010.02.005  0.52
2009 Ayaz-Guner S, Zhang J, Li L, Walker JW, Ge Y. In vivo phosphorylation site mapping in mouse cardiac troponin I by high resolution top-down electron capture dissociation mass spectrometry: Ser22/23 are the only sites basally phosphorylated. Biochemistry. 48: 8161-70. PMID 19637843 DOI: 10.1021/bi900739f  0.52
2008 Sancho Solis R, Ge Y, Walker JW. Single amino acid sequence polymorphisms in rat cardiac troponin revealed by top-down tandem mass spectrometry. Journal of Muscle Research and Cell Motility. 29: 203-12. PMID 19165611 DOI: 10.1007/s10974-009-9168-y  0.52
2005 Colabroy KL, Zhai H, Li T, Ge Y, Zhang Y, Liu A, Ealick SE, McLafferty FW, Begley TP. The mechanism of inactivation of 3-hydroxyanthranilate-3,4-dioxygenase by 4-chloro-3-hydroxyanthranilate. Biochemistry. 44: 7623-31. PMID 15909977 DOI: 10.1021/bi0473455  0.52
2003 Ge Y, Lawhorn BG, ElNaggar M, Sze SK, Begley TP, McLafferty FW. Detection of four oxidation sites in viral prolyl-4-hydroxylase by top-down mass spectrometry. Protein Science : a Publication of the Protein Society. 12: 2320-6. PMID 14500890 DOI: 10.1110/ps.03244403  0.52
2003 Sze SK, Ge Y, Oh H, McLafferty FW. Plasma electron capture dissociation for the characterization of large proteins by top down mass spectrometry. Analytical Chemistry. 75: 1599-603. PMID 12705591 DOI: 10.1021/ac020446t  0.52
2003 Ge Y, El-Naggar M, Sze SK, Oh HB, Begley TP, McLafferty FW, Boshoff H, Barry CE. Top down characterization of secreted proteins from Mycobacterium tuberculosis by electron capture dissociation mass spectrometry. Journal of the American Society For Mass Spectrometry. 14: 253-61. PMID 12648932 DOI: 10.1016/S1044-0305(02)00913-3  0.52
2002 Oh H, Breuker K, Sze SK, Ge Y, Carpenter BK, McLafferty FW. Secondary and tertiary structures of gaseous protein ions characterized by electron capture dissociation mass spectrometry and photofragment spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 99: 15863-8. PMID 12444260 DOI: 10.1073/pnas.212643599  0.52
2002 Sze SK, Ge Y, Oh H, McLafferty FW. Top-down mass spectrometry of a 29-kDa protein for characterization of any posttranslational modification to within one residue. Proceedings of the National Academy of Sciences of the United States of America. 99: 1774-9. PMID 11842225 DOI: 10.1073/pnas.251691898  0.52
2002 Ge Y, Lawhorn BG, ElNaggar M, Strauss E, Park JH, Begley TP, McLafferty FW. Top down characterization of larger proteins (45 kDa) by electron capture dissociation mass spectrometry. Journal of the American Chemical Society. 124: 672-8. PMID 11804498 DOI: 10.1021/ja011335z  0.52
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