Peter M. Kekenes-Huskey - Publications

Affiliations: 
University of California, San Diego, La Jolla, CA 
Area:
simulation

28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Colli DF, Blood SR, Sankarankutty AC, Sachse FB, Frisk M, Louch WE, Kekenes-Huskey PM. A Matched-Filter-Based Algorithm for Subcellular Classification of T-System in Cardiac Tissues. Biophysical Journal. PMID 30979553 DOI: 10.1016/j.bpj.2019.03.010  0.36
2018 Shen X, Brink JVD, Hou Y, Colli D, Le C, Kolstad TR, MacQuaide N, Carlson CR, Kekenes-Huskey PM, Edwards AG, Soeller C, Louch WE. 3D dSTORM imaging reveals novel detail of ryanodine receptor localization in rat cardiac myocytes. The Journal of Physiology. PMID 30412283 DOI: 10.1113/JP277360  0.36
2016 Scott CE, Kekenes-Huskey PM. Molecular Basis of S100A1 Activation at Saturating and Subsaturating Calcium Concentrations. Biophysical Journal. 110: 1052-1063. PMID 26958883 DOI: 10.1016/j.bpj.2015.12.040  0.84
2015 Kekenes-Huskey PM, Eun C, McCammon JA. Enzyme localization, crowding, and buffers collectively modulate diffusion-influenced signal transduction: Insights from continuum diffusion modeling. The Journal of Chemical Physics. 143: 094103. PMID 26342355 DOI: 10.1063/1.4929528  0.84
2015 Kekenes-Huskey PM, Gillette AK, McCammon JA. Erratum: "Predicting the influence of long-range molecular interactions on macroscopic-scale diffusion by homogenization of the Smoluchowski equation" [J. Chem. Phys. 140, 174106 (2014)]. The Journal of Chemical Physics. 142: 109902. PMID 25770569 DOI: 10.1063/1.4914327  0.84
2015 Lindert S, Cheng Y, Kekenes-Huskey P, Regnier M, McCammon JA. Effects of HCM cTnI mutation R145G on troponin structure and modulation by PKA phosphorylation elucidated by molecular dynamics simulations. Biophysical Journal. 108: 395-407. PMID 25606687 DOI: 10.1016/j.bpj.2014.11.3461  0.84
2014 Wang N, Zhou S, Kekenes-Huskey PM, Li B, McCammon JA. Poisson-Boltzmann versus Size-Modified Poisson-Boltzmann Electrostatics Applied to Lipid Bilayers. The Journal of Physical Chemistry. B. 118: 14827-32. PMID 25426875 DOI: 10.1021/jp511702w  0.84
2014 Metzger VT, Eun C, Kekenes-Huskey PM, Huber G, McCammon JA. Electrostatic channeling in P. falciparum DHFR-TS: Brownian dynamics and Smoluchowski modeling. Biophysical Journal. 107: 2394-402. PMID 25418308 DOI: 10.1016/j.bpj.2014.09.039  0.84
2014 Cheng Y, Lindert S, Kekenes-Huskey P, Rao VS, Solaro RJ, Rosevear PR, Amaro R, McCulloch AD, McCammon JA, Regnier M. Computational studies of the effect of the S23D/S24D troponin I mutation on cardiac troponin structural dynamics. Biophysical Journal. 107: 1675-85. PMID 25296321 DOI: 10.1016/j.bpj.2014.08.008  0.84
2014 Kekenes-Huskey PM, Gillette AK, McCammon JA. Predicting the influence of long-range molecular interactions on macroscopic-scale diffusion by homogenization of the Smoluchowski equation. The Journal of Chemical Physics. 140: 174106. PMID 24811624 DOI: 10.1063/1.4873382  0.84
2014 Eun C, Kekenes-Huskey PM, Metzger VT, McCammon JA. A model study of sequential enzyme reactions and electrostatic channeling. The Journal of Chemical Physics. 140: 105101. PMID 24628210 DOI: 10.1063/1.4867286  0.84
2014 Hake J, Kekenes-Huskey PM, McCulloch AD. Computational modeling of subcellular transport and signaling. Current Opinion in Structural Biology. 25: 92-7. PMID 24509246 DOI: 10.1016/j.sbi.2014.01.006  0.84
2013 Liao T, Zhang Y, Kekenes-Huskey PM, Cheng Y, Michailova A, McCulloch AD, Holst M, McCammon JA. Multi-core CPU or GPU-accelerated Multiscale Modeling for Biomolecular Complexes. Molecular Based Mathematical Biology (Online). 1. PMID 24352481 DOI: 10.2478/mlbmb-2013-0009  0.84
2013 Kekenes-Huskey PM, Liao T, Gillette AK, Hake JE, Zhang Y, Michailova AP, McCulloch AD, McCammon JA. Molecular and subcellular-scale modeling of nucleotide diffusion in the cardiac myofilament lattice. Biophysical Journal. 105: 2130-40. PMID 24209858 DOI: 10.1016/j.bpj.2013.09.020  0.84
2013 Eun C, Kekenes-Huskey PM, McCammon JA. Influence of neighboring reactive particles on diffusion-limited reactions. The Journal of Chemical Physics. 139: 044117. PMID 23901970 DOI: 10.1063/1.4816522  0.84
2013 Setny P, Baron R, Michael Kekenes-Huskey P, McCammon JA, Dzubiella J. Solvent fluctuations in hydrophobic cavity-ligand binding kinetics. Proceedings of the National Academy of Sciences of the United States of America. 110: 1197-202. PMID 23297241 DOI: 10.1073/pnas.1221231110  0.68
2012 Kekenes-Huskey PM, Gillette A, Hake J, McCammon JA. Finite Element Estimation of Protein-Ligand Association Rates with Post-Encounter Effects: Applications to Calcium binding in Troponin C and SERCA. Computational Science & Discovery. 5. PMID 23293662 DOI: 10.1088/1749-4699/5/1/014015  0.84
2012 Kekenes-Huskey PM, Lindert S, McCammon JA. Molecular basis of calcium-sensitizing and desensitizing mutations of the human cardiac troponin C regulatory domain: a multi-scale simulation study. Plos Computational Biology. 8: e1002777. PMID 23209387 DOI: 10.1371/journal.pcbi.1002777  0.84
2012 Lindert S, Kekenes-Huskey PM, McCammon JA. Long-timescale molecular dynamics simulations elucidate the dynamics and kinetics of exposure of the hydrophobic patch in troponin C. Biophysical Journal. 103: 1784-9. PMID 23083722 DOI: 10.1016/j.bpj.2012.08.058  0.84
2012 Kekenes-Huskey PM, Cheng Y, Hake JE, Sachse FB, Bridge JH, Holst MJ, McCammon JA, McCulloch AD, Michailova AP. Modeling effects of L-type ca(2+) current and na(+)-ca(2+) exchanger on ca(2+) trigger flux in rabbit myocytes with realistic T-tubule geometries. Frontiers in Physiology. 3: 351. PMID 23060801 DOI: 10.3389/fphys.2012.00351  0.84
2012 Kekenes-Huskey PM, Metzger VT, Grant BJ, Andrew McCammon J. Calcium binding and allosteric signaling mechanisms for the sarcoplasmic reticulum Ca²+ ATPase. Protein Science : a Publication of the Protein Society. 21: 1429-43. PMID 22821874 DOI: 10.1002/pro.2129  0.84
2012 Hake J, Edwards AG, Yu Z, Kekenes-Huskey PM, Michailova AP, McCammon JA, Holst MJ, Hoshijima M, McCulloch AD. Modelling cardiac calcium sparks in a three-dimensional reconstruction of a calcium release unit. The Journal of Physiology. 590: 4403-22. PMID 22495592 DOI: 10.1113/jphysiol.2012.227926  0.84
2012 Lindert S, Kekenes-Huskey PM, Huber G, Pierce L, McCammon JA. Dynamics and calcium association to the N-terminal regulatory domain of human cardiac troponin C: a multiscale computational study. The Journal of Physical Chemistry. B. 116: 8449-59. PMID 22329450 DOI: 10.1021/jp212173f  0.84
2012 Cheng Y, Kekenes-Huskey P, Hake E, Holst J, McCammon A, Michailova P, Hake JE, Holst MJ, McCammon JA, Michailova AP. Multi-scale continuum modeling of biological processes: From molecular electro-diffusion to sub-cellular signaling transduction Computational Science and Discovery. 5. DOI: 10.1088/1749-4699/5/1/015002  0.84
2007 Heo J, Han SK, Vaidehi N, Wendel J, Kekenes-Huskey P, Goddard WA. Prediction of the 3D structure of FMRF-amide neuropeptides bound to the mouse MrgC11 GPCR and experimental validation Chembiochem. 8: 1527-1539. PMID 17647204 DOI: 10.1002/cbic.200700188  0.84
2005 Cho AE, Wendel JA, Vaidehi N, Kekenes-Huskey PM, Floriano WB, Maiti PK, Goddard WA. The MPSim-Dock hierarchical docking algorithm: application to the eight trypsin inhibitor cocrystals. Journal of Computational Chemistry. 26: 48-71. PMID 15529328 DOI: 10.1002/jcc.20118  0.84
2004 Kekenes-Huskey PM, Muegge I, von Rauch M, Gust R, Knapp EW. A molecular docking study of estrogenically active compounds with 1,2-diarylethane and 1,2-diarylethene pharmacophores. Bioorganic & Medicinal Chemistry. 12: 6527-37. PMID 15556769 DOI: 10.1016/j.bmc.2004.09.022  0.84
2003 Kekenes-Huskey PM, Vaidehi N, Floriano WB, Goddard WA. Fidelity of phenylalanyl-tRNA synthetase in binding the natural amino acids Journal of Physical Chemistry B. 107: 11549-11557.  0.84
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