Nicholas H. Bergman - Publications

Affiliations: 
NBACC/Univ of Maryland 
Area:
Genomics, Microbiology

24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Ondov BD, Treangen TJ, Melsted P, Mallonee AB, Bergman NH, Koren S, Phillippy AM. Mash: fast genome and metagenome distance estimation using MinHash. Genome Biology. 17: 132. PMID 27323842 DOI: 10.1186/S13059-016-0997-X  0.32
2016 Hall AB, Papathanos PA, Sharma A, Cheng C, Akbari OS, Assour L, Bergman NH, Cagnetti A, Crisanti A, Dottorini T, Fiorentini E, Galizi R, Hnath J, Jiang X, Koren S, et al. Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035980 DOI: 10.1073/Pnas.1525164113  0.32
2014 Kuhn JH, Andersen KG, Bào Y, Bavari S, Becker S, Bennett RS, Bergman NH, Blinkova O, Bradfute S, Brister JR, Bukreyev A, Chandran K, Chepurnov AA, Davey RA, Dietzgen RG, et al. Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names. Viruses. 6: 3663-82. PMID 25256396 DOI: 10.3390/V6093663  0.32
2013 Fang G, Passalacqua KD, Hocking J, Llopis PM, Gerstein M, Bergman NH, Jacobs-Wagner C. Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene co-expression and evolution Bmc Genomics. 14. PMID 23829427 DOI: 10.1186/1471-2164-14-450  0.32
2012 Passalacqua KD, Varadarajan A, Weist C, Ondov BD, Byrd B, Read TD, Bergman NH. Strand-specific RNA-seq reveals ordered patterns of sense and antisense transcription in Bacillus anthracis Plos One. 7. PMID 22937038 DOI: 10.1371/Journal.Pone.0043350  0.32
2012 Price EP, Seymour ML, Sarovich DS, Latham J, Wolken SR, Mason J, Vincent G, Drees KP, Beckstrom-Sternberg SM, Phillippy AM, Koren S, Okinaka RT, Chung WK, Schupp JM, Wagner DM, ... ... Bergman NH, et al. Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe. Emerging Infectious Diseases. 18: 1307-13. PMID 22840345 DOI: 10.3201/Eid1808.111343  0.32
2011 Kislyuk AO, Haegeman B, Bergman NH, Weitz JS. Genomic fluidity: an integrative view of gene diversity within microbial populations. Bmc Genomics. 12: 32. PMID 21232151 DOI: 10.1186/1471-2164-12-32  0.32
2010 Ondov BD, Cochran C, Landers M, Meredith GD, Dudas M, Bergman NH. An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System. Bioinformatics (Oxford, England). 26: 1901-2. PMID 20562417 DOI: 10.1093/Bioinformatics/Btq291  0.32
2009 Bagby SC, Bergman NH, Shechner DM, Yen C, Bartel DP. A class I ligase ribozyme with reduced Mg2+ dependence: Selection, sequence analysis, and identification of functional tertiary interactions. Rna (New York, N.Y.). 15: 2129-46. PMID 19946040 DOI: 10.1261/Rna.1912509  0.32
2009 Passalacqua KD, Varadarajan A, Ondov BD, Okou DT, Zwick ME, Bergman NH. Structure and complexity of a bacterial transcriptome. Journal of Bacteriology. 191: 3203-11. PMID 19304856 DOI: 10.1128/Jb.00122-09  0.32
2009 Passalacqua KD, Varadarajan A, Byrd B, Bergman NH. Comparative transcriptional profiling of Bacillus cereus sensu lato strains during growth in CO2-bicarbonate and aerobic atmospheres. Plos One. 4: e4904. PMID 19295911 DOI: 10.1371/Journal.Pone.0004904  0.32
2008 Pfleger BF, Kim Y, Nusca TD, Maltseva N, Lee JY, Rath CM, Scaglione JB, Janes BK, Anderson EC, Bergman NH, Hanna PC, Joachimiak A, Sherman DH. Structural and functional analysis of AsbF: origin of the stealth 3,4-dihydroxybenzoic acid subunit for petrobactin biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 105: 17133-8. PMID 18955706 DOI: 10.1073/Pnas.0808118105  0.32
2007 Bergman NH, Anderson EC, Swenson EE, Janes BK, Fisher N, Niemeyer MM, Miyoshi AD, Hanna PC. Transcriptional profiling of Bacillus anthracis during infection of host macrophages. Infection and Immunity. 75: 3434-44. PMID 17470545 DOI: 10.1128/Iai.01345-06  0.32
2007 Passalacqua KD, Bergman NH, Lee JY, Sherman DH, Hanna PC. The global transcriptional responses of Bacillus anthracis Sterne (34F2) and a Delta sodA1 mutant to paraquat reveal metal ion homeostasis imbalances during endogenous superoxide stress. Journal of Bacteriology. 189: 3996-4013. PMID 17384197 DOI: 10.1128/Jb.00185-07  0.32
2007 Lee JY, Janes BK, Passalacqua KD, Pfleger BF, Bergman NH, Liu H, Håkansson K, Somu RV, Aldrich CC, Cendrowski S, Hanna PC, Sherman DH. Biosynthetic analysis of the petrobactin siderophore pathway from Bacillus anthracis. Journal of Bacteriology. 189: 1698-710. PMID 17189355 DOI: 10.1128/Jb.01526-06  0.32
2007 Bergman NH, Passalacqua KD, Hanna PC, Qin ZS. Operon prediction for sequenced bacterial genomes without experimental information. Applied and Environmental Microbiology. 73: 846-54. PMID 17122389 DOI: 10.1128/Aem.01686-06  0.32
2006 Bergman NH, Anderson EC, Swenson EE, Niemeyer MM, Miyoshi AD, Hanna PC. Transcriptional profiling of the Bacillus anthracis life cycle in vitro and an implied model for regulation of spore formation. Journal of Bacteriology. 188: 6092-100. PMID 16923876 DOI: 10.1128/Jb.00723-06  0.32
2005 Bergman NH, Passalacqua KD, Gaspard R, Shetron-Rama LM, Quackenbush J, Hanna PC. Murine macrophage transcriptional responses to Bacillus anthracis infection and intoxication. Infection and Immunity. 73: 1069-80. PMID 15664951 DOI: 10.1128/Iai.73.2.1069-1080.2005  0.32
2004 Bergman NH, Lau NC, Lehnert V, Westhof E, Bartel DP. The three-dimensional architecture of the class I ligase ribozyme. Rna (New York, N.Y.). 10: 176-84. PMID 14730016 DOI: 10.1261/Rna.5177504  0.32
2004 Liu H, Bergman NH, Thomason B, Shallom S, Hazen A, Crossno J, Rasko DA, Ravel J, Read TD, Peterson SN, Yates J, Hanna PC. Formation and composition of the Bacillus anthracis endospore. Journal of Bacteriology. 186: 164-78. PMID 14679236 DOI: 10.1128/Jb.186.1.164-178.2004  0.32
2003 Bergman NH, Akerley BJ. Position-based scanning for comparative genomics and identification of genetic islands in Haemophilus influenzae type b. Infection and Immunity. 71: 1098-108. PMID 12595420 DOI: 10.1128/Iai.71.3.1098-1108.2003  0.32
2002 Glasner ME, Bergman NH, Bartel DP. Metal ion requirements for structure and catalysis of an RNA ligase ribozyme Biochemistry. 41: 8103-8112. PMID 12069603 DOI: 10.1021/Bi012179B  0.32
2000 Bergman NH, Johnston WK, Bartel DP. Kinetic framework for ligation by an efficient RNA ligase ribozyme Biochemistry. 39: 3115-3123. PMID 10715133 DOI: 10.1021/Bi992654U  0.32
1999 Bogden CE, Fass D, Bergman N, Nichols MD, Berger JM. The structural basis for terminator recognition by the Rho transcription termination factor. Molecular Cell. 3: 487-93. PMID 10230401 DOI: 10.1016/S1097-2765(00)80476-1  0.32
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