| Year |
Citation |
Score |
| 2017 |
Venkateswaran K, Checinska Sielaff A, Ratnayake S, Pope RK, Blank TE, Stepanov VG, Fox GE, van Tongeren SP, Torres C, Allen J, Jaing C, Pierson D, Perry J, Koren S, Phillippy A, ... ... Bergman NH, et al. Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station. Genome Announcements. 5. PMID 28798168 DOI: 10.1128/Genomea.00680-17 |
0.301 |
|
| 2017 |
Koren S, Walenz BP, Berlin K, Miller JR, Bergman NH, Phillippy AM. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Genome Research. PMID 28298431 DOI: 10.1101/Gr.215087.116 |
0.336 |
|
| 2016 |
Ondov BD, Treangen TJ, Melsted P, Mallonee AB, Bergman NH, Koren S, Phillippy AM. Mash: fast genome and metagenome distance estimation using MinHash. Genome Biology. 17: 132. PMID 27323842 DOI: 10.1186/S13059-016-0997-X |
0.308 |
|
| 2016 |
Treangen TJ, Schoeler G, Phillippy AM, Bergman NH, Turell MJ. Identification and Genomic Analysis of a Novel Group C Orthobunyavirus Isolated from a Mosquito Captured near Iquitos, Peru. Plos Neglected Tropical Diseases. 10: e0004440. PMID 27074162 DOI: 10.1371/Journal.Pntd.0004440 |
0.331 |
|
| 2014 |
Treangen TJ, Maybank RA, Enke S, Friss MB, Diviak LF, Karaolis DK, Koren S, Ondov B, Phillippy AM, Bergman NH, Rosovitz MJ. Complete Genome Sequence of the Quality Control Strain Staphylococcus aureus subsp. aureus ATCC 25923. Genome Announcements. 2. PMID 25377701 DOI: 10.1128/Genomea.01110-14 |
0.314 |
|
| 2014 |
Kuhn JH, Andersen KG, Bào Y, Bavari S, Becker S, Bennett RS, Bergman NH, Blinkova O, Bradfute S, Brister JR, Bukreyev A, Chandran K, Chepurnov AA, Davey RA, Dietzgen RG, et al. Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names. Viruses. 6: 3663-82. PMID 25256396 DOI: 10.3390/V6093663 |
0.351 |
|
| 2013 |
Koren S, Harhay GP, Smith TP, Bono JL, Harhay DM, Mcvey SD, Radune D, Bergman NH, Phillippy AM. Reducing assembly complexity of microbial genomes with single-molecule sequencing. Genome Biology. 14: R101. PMID 24034426 DOI: 10.1186/Gb-2013-14-9-R101 |
0.333 |
|
| 2013 |
Harrington R, Ondov BD, Radune D, Friss MB, Klubnik J, Diviak L, Hnath J, Cendrowski SR, Blank TE, Karaolis D, Friedlander AM, Burans JP, Rosovitz MJ, Treangen T, Phillippy AM, ... Bergman NH, et al. Genome Sequence of the Attenuated Carbosap Vaccine Strain of Bacillus anthracis. Genome Announcements. 1. PMID 23405332 DOI: 10.1128/Genomea.00067-12 |
0.342 |
|
| 2012 |
Passalacqua KD, Varadarajan A, Weist C, Ondov BD, Byrd B, Read TD, Bergman NH. Strand-specific RNA-seq reveals ordered patterns of sense and antisense transcription in Bacillus anthracis Plos One. 7. PMID 22937038 DOI: 10.1371/Journal.Pone.0043350 |
0.38 |
|
| 2011 |
Kislyuk AO, Haegeman B, Bergman NH, Weitz JS. Genomic fluidity: an integrative view of gene diversity within microbial populations. Bmc Genomics. 12: 32. PMID 21232151 DOI: 10.1186/1471-2164-12-32 |
0.332 |
|
| 2010 |
Ondov BD, Cochran C, Landers M, Meredith GD, Dudas M, Bergman NH. An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System. Bioinformatics (Oxford, England). 26: 1901-2. PMID 20562417 DOI: 10.1093/Bioinformatics/Btq291 |
0.332 |
|
| 2010 |
Martin J, Zhu W, Passalacqua KD, Bergman N, Borodovsky M. Bacillus anthracis genome organization in light of whole transcriptome sequencing. Bmc Bioinformatics. 11: S10. PMID 20438648 DOI: 10.1186/1471-2105-11-S3-S10 |
0.375 |
|
| 2009 |
Bagby SC, Bergman NH, Shechner DM, Yen C, Bartel DP. A class I ligase ribozyme with reduced Mg2+ dependence: Selection, sequence analysis, and identification of functional tertiary interactions. Rna (New York, N.Y.). 15: 2129-46. PMID 19946040 DOI: 10.1261/Rna.1912509 |
0.578 |
|
| 2009 |
Passalacqua KD, Varadarajan A, Ondov BD, Okou DT, Zwick ME, Bergman NH. Structure and complexity of a bacterial transcriptome. Journal of Bacteriology. 191: 3203-11. PMID 19304856 DOI: 10.1128/Jb.00122-09 |
0.391 |
|
| 2008 |
Pfleger BF, Kim Y, Nusca TD, Maltseva N, Lee JY, Rath CM, Scaglione JB, Janes BK, Anderson EC, Bergman NH, Hanna PC, Joachimiak A, Sherman DH. Structural and functional analysis of AsbF: origin of the stealth 3,4-dihydroxybenzoic acid subunit for petrobactin biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 105: 17133-8. PMID 18955706 DOI: 10.1073/Pnas.0808118105 |
0.308 |
|
| 2008 |
Ondov BD, Varadarajan A, Passalacqua KD, Bergman NH. Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications. Bioinformatics (Oxford, England). 24: 2776-7. PMID 18842598 DOI: 10.1093/Bioinformatics/Btn512 |
0.339 |
|
| 2007 |
Bergman NH, Anderson EC, Swenson EE, Janes BK, Fisher N, Niemeyer MM, Miyoshi AD, Hanna PC. Transcriptional profiling of Bacillus anthracis during infection of host macrophages. Infection and Immunity. 75: 3434-44. PMID 17470545 DOI: 10.1128/Iai.01345-06 |
0.339 |
|
| 2007 |
Passalacqua KD, Bergman NH, Lee JY, Sherman DH, Hanna PC. The global transcriptional responses of Bacillus anthracis Sterne (34F2) and a Delta sodA1 mutant to paraquat reveal metal ion homeostasis imbalances during endogenous superoxide stress. Journal of Bacteriology. 189: 3996-4013. PMID 17384197 DOI: 10.1128/Jb.00185-07 |
0.307 |
|
| 2007 |
Bergman NH, Passalacqua KD, Hanna PC, Qin ZS. Operon prediction for sequenced bacterial genomes without experimental information. Applied and Environmental Microbiology. 73: 846-54. PMID 17122389 DOI: 10.1128/Aem.01686-06 |
0.347 |
|
| 2004 |
Bergman NH, Lau NC, Lehnert V, Westhof E, Bartel DP. The three-dimensional architecture of the class I ligase ribozyme. Rna (New York, N.Y.). 10: 176-84. PMID 14730016 DOI: 10.1261/Rna.5177504 |
0.572 |
|
| 2004 |
Liu H, Bergman NH, Thomason B, Shallom S, Hazen A, Crossno J, Rasko DA, Ravel J, Read TD, Peterson SN, Yates J, Hanna PC. Formation and composition of the Bacillus anthracis endospore. Journal of Bacteriology. 186: 164-78. PMID 14679236 DOI: 10.1128/Jb.186.1.164-178.2004 |
0.337 |
|
| 2003 |
Bergman NH, Akerley BJ. Position-based scanning for comparative genomics and identification of genetic islands in Haemophilus influenzae type b. Infection and Immunity. 71: 1098-108. PMID 12595420 DOI: 10.1128/Iai.71.3.1098-1108.2003 |
0.358 |
|
| 2002 |
Glasner ME, Bergman NH, Bartel DP. Metal ion requirements for structure and catalysis of an RNA ligase ribozyme Biochemistry. 41: 8103-8112. PMID 12069603 DOI: 10.1021/Bi012179B |
0.613 |
|
| 2000 |
Bergman NH, Johnston WK, Bartel DP. Kinetic framework for ligation by an efficient RNA ligase ribozyme Biochemistry. 39: 3115-3123. PMID 10715133 DOI: 10.1021/Bi992654U |
0.54 |
|
| 1999 |
Bogden CE, Fass D, Bergman N, Nichols MD, Berger JM. The structural basis for terminator recognition by the Rho transcription termination factor. Molecular Cell. 3: 487-93. PMID 10230401 DOI: 10.1016/S1097-2765(00)80476-1 |
0.355 |
|
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