Nicholas H. Bergman - Related publications

Affiliations: 
NBACC/Univ of Maryland 
Area:
Genomics, Microbiology
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Woodhouse MR, Sen S, Schott D, Portwood JL, Freeling M, Walley JW, Andorf CM, Schnable JC. qTeller: A tool for comparative multi-genomic gene expression analysis. Bioinformatics (Oxford, England). PMID 34406385 DOI: 10.1093/bioinformatics/btab604   
2021 Pang J, Hu W, Wang W, Li J, Mao K. The complete chloroplast genome of , a Critically Endangered species in New Caledonia. Mitochondrial Dna. Part B, Resources. 6: 2648-2649. PMID 34409167 DOI: 10.1080/23802359.2021.1964399   
2021 Park J, Wang HH. Systematic dissection of σ sequence diversity and function in bacteria. Cell Reports. 36: 109590. PMID 34433066 DOI: 10.1016/j.celrep.2021.109590   
2021 Agarwal G, Choudhary D, Stice SP, Myers BK, Gitaitis RD, Venter SN, Kvitko BH, Dutta B. Pan-Genome-Wide Analysis of Identified Genes Linked to Pathogenicity in Onion. Frontiers in Microbiology. 12: 684756. PMID 34489883 DOI: 10.3389/fmicb.2021.684756   
2021 Mishra A, Gupta J, Kumari T, Pal R, Thakur IS. Unravelling the attributes of novel cyanobacteria Jacksonvillea sp. ISTCYN1 by draft genome sequencing. Bioresource Technology. 337: 125473. PMID 34320753 DOI: 10.1016/j.biortech.2021.125473   
2021 Wang L, Liao B, Gong L, Xiao S, Huang Z. Haploid Genome Analysis Reveals a Tandem Cluster of Four Genes Involved in the High-Temperature Adaptation of . Microbiology Spectrum. e0028721. PMID 34406871 DOI: 10.1128/Spectrum.00287-21   
2021 Leão C, Clemente L, Moura L, Seyfarth AM, Hansen IM, Hendriksen RS, Amaro A. Emergence and Clonal Spread of CTX-M-65-Producing From Retail Meat in Portugal. Frontiers in Microbiology. 12: 653595. PMID 34354678 DOI: 10.3389/fmicb.2021.653595   
2021 Yuan XL, Zhang CS, Kong FY, Zhang ZF, Wang FL. Genome Analysis of JM01 Provides Insights into Its Pathogenicity Mechanisms. Plants (Basel, Switzerland). 10. PMID 34451665 DOI: 10.3390/plants10081620   
2021 He J, Zhao C, Guo Y, Zhang H, Zhao B, Chu Z. Completely mitochondrial genome of . Mitochondrial Dna. Part B, Resources. 6: 2708-2709. PMID 34435128 DOI: 10.1080/23802359.2021.1945966   
2021 Guerrini MM, Oguchi A, Suzuki A, Murakawa Y. Cap analysis of gene expression (CAGE) and noncoding regulatory elements. Seminars in Immunopathology. PMID 34468849 DOI: 10.1007/s00281-021-00886-5   
2021 Wang RH, Chen MM, Wu YZ, Wang RR, Xiao XF, Qi ZC, Yan XL. The complete chloroplast genome sequence of wild Japanese pepper Makino (Solanaceae). Mitochondrial Dna. Part B, Resources. 6: 2322-2323. PMID 34345686 DOI: 10.1080/23802359.2021.1950063   
2021 Conde C, Price-Carter M, Cochard T, Branger M, Stevenson K, Whittington R, Bannantine JP, Biet F. Whole-Genome Analysis of subsp. IS -. Frontiers in Microbiology. 12: 660002. PMID 34040595 DOI: 10.3389/fmicb.2021.660002   
2021 Lupande-Mwenebitu D, Khedher MB, Khabthani S, Rym L, Phoba MF, Nabti LZ, Lunguya-Metila O, Pantel A, Lavigne JP, Rolain JM, Diene SM. First Genome Description of Isolate Bearing NDM-1 from Blood Culture. Microorganisms. 9. PMID 34442831 DOI: 10.3390/microorganisms9081751   
2021 Paterson GK. Genomic epidemiology of the opportunistic pathogen from companion dogs. Journal of Medical Microbiology. 70. PMID 34431760 DOI: 10.1099/jmm.0.001407   
2021 Jiang M, Zhu Y, Wu Q, Zhang H. Complete chloroplast genome of a rare and endangered plant species : genomic features and phylogenetic relationship within Orchidaceae. Mitochondrial Dna. Part B, Resources. 6: 2872-2879. PMID 34532575 DOI: 10.1080/23802359.2021.1972049   
2021 Grankvist A, Jaén-Luchoro D, Wass L, Sikora P, Wennerås C. Comparative Genomics of Clinical Isolates of the Emerging Tick-Borne Pathogen . Microorganisms. 9. PMID 34361922 DOI: 10.3390/microorganisms9071488   
2021 Lee JH, Siddique MI, Kwon JK, Kang BC. Comparative Genomic Analysis Reveals Genetic Variation and Adaptive Evolution in the Pathogenicity-Related Genes of . Frontiers in Microbiology. 12: 694136. PMID 34484141 DOI: 10.3389/fmicb.2021.694136   
2021 Huang CH, Chen CC, Lin YC, Chen CH, Lee AY, Liou JS, Gu CT, Huang L. The Gene as a Genome-Wide Taxonomic Marker for High Resolution Discrimination of and Its Closely Related Taxa. Microorganisms. 9. PMID 34442649 DOI: 10.3390/microorganisms9081570   
2021 Nitnaware KM, Raskar KB, Agarwal G, Chávez Montes RA, Chopra R, López-Arredondo DL, Nikam TD, Patil GB. Whole-genome characterization and comparative genomics of a novel freshwater cyanobacteria species: Pseudanabaena punensis. Molecular Phylogenetics and Evolution. 164: 107272. PMID 34332035 DOI: 10.1016/j.ympev.2021.107272   
2021 Qin X, Wang H, Miao C, Yang X, Zhang Y, Feng J, Forsythe SJ, Man C, Jiang Y. Comparative genomics reveals environmental adaptation differences between Cronobacter species. Food Research International (Ottawa, Ont.). 147: 110541. PMID 34399518 DOI: 10.1016/j.foodres.2021.110541   
2021 Wang H, Sha X, Li R, Li Y, Khaleque HN, Zhang Y, Bohu T, Bai Z, Zhuang X. Comparative Genome Analysis Provides Molecular Evidence for Reclassification of the Photosynthetic Bacterium EBL0706 as a Strain of . Microorganisms. 9. PMID 34442833 DOI: 10.3390/microorganisms9081754   
2021 Takeda I, Araki M, Ishiguro KI, Ohga T, Takada K, Yamaguchi Y, Hashimoto K, Kai T, Nakagata N, Imasaka M, Yoshinobu K, Araki K. Gene trapping reveals a new transcriptionally active genome element: The chromosome-specific clustered trap region. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. PMID 34418226 DOI: 10.1111/gtc.12890   
2021 Ichihara A, Ojima H, Gotoh K, Matsushita O, Take S, Okada H, Watanabe A, Yokota K. Serodiagnosis and Bacterial Genome of Infection. Toxins. 13. PMID 34357939 DOI: 10.3390/toxins13070467   
2021 Sharon BM, Hulyalkar NV, Nguyen VH, Zimmern PE, Palmer KL, De Nisco NJ. Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies. Journal of Visualized Experiments : Jove. PMID 34487123 DOI: 10.3791/62872   
2021 Hernández-Juárez LE, Camorlinga M, Méndez-Tenorio A, Calderón JF, Huang BC, Bandoy DDR, Weimer BC, Torres J. Analyses of publicly available genomes revealed genetic distances indicating they belong to more than one species. Virulence. 12: 1950-1964. PMID 34304696 DOI: 10.1080/21505594.2021.1950955   
2021 Zeng Q, Liu J, Wang C, Wang H, Zhang L, Hu J, Bao L, Wang S. High-quality reannotation of the king scallop genome reveals no 'gene-rich' feature and evolution of toxin resistance. Computational and Structural Biotechnology Journal. 19: 4954-4960. PMID 34527199 DOI: 10.1016/j.csbj.2021.08.038   
2021 Nie W, Zheng X, Wang S, Ahmad I, Zhu B. Genome resource of Ancylobacter pratisalsi E130 T: A novel plant growth-promoting bacterium isolated from the rhizosphere. Phytopathology. PMID 34353121 DOI: 10.1094/PHYTO-06-21-0251-A   
2021 Baker LM, Davies TS, Masetti G, Hughes TR, Marchesi JR, Jack AA, Joyce TSC, Allen MD, Plummer SF, Michael DR, Ramanathan G, Del Sol R, Facey PD. A genome guided evaluation of the Lab4 probiotic consortium. Genomics. PMID 34391865 DOI: 10.1016/j.ygeno.2021.08.007   
2021 Shan Y, Pei X, Yong S, Li J, Qin Q, Zeng S, Yu J. Analysis of the complete chloroplast genomes of and (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 2672-2680. PMID 34435116 DOI: 10.1080/23802359.2021.1920491   
2021 Kwon YJ, Chun BH, Jung HS, Chu J, Joung H, Park SY, Kim BK, Jeon CO. Safety assessment of (formerly ) Q180. Journal of Microbiology and Biotechnology. 31. PMID 34373437 DOI: 10.4014/jmb.2106.06066   
2021 Ye X, Wang L, Xiang D, Sun Y. The first complete chloroplast genome of (Diels) Hedberg (Caryophyllales: Polygonaceae) with phylogenetic implications. Mitochondrial Dna. Part B, Resources. 6: 2203-2205. PMID 34263050 DOI: 10.1080/23802359.2021.1945967   
2021 Chacón-Vargas K, McCarthy CO, Choi D, Wang L, Yu JH, Gibbons JG. Comparison of Two Genomes From Different Clades Reveals Independent Evolution of Alpha-Amylase Duplication, Variation in Secondary Metabolism Genes, and Differences in Primary Metabolism. Frontiers in Microbiology. 12: 691296. PMID 34326825 DOI: 10.3389/fmicb.2021.691296   
2021 Konaté S, Zgheib R, Camara A, Doumbo O, Djimdé A, Koné AK, Théra MA, Fournier PE, Tidjani Alou M, Raoult D, Million M. Draft Genome Sequence of Bacillus velezensis Strain Marseille-Q1230, Isolated from a Stool Sample from a Severely Malnourished Child. Microbiology Resource Announcements. 10: e0051421. PMID 34410162 DOI: 10.1128/MRA.00514-21   
2021 Hodor P, Pope CE, Whitlock KB, Hoffman LR, Limbrick DL, McDonald PJ, Hauptman JS, Ojemann JG, Simon TD. Molecular Characterization of Microbiota in Cerebrospinal Fluid From Patients With CSF Shunt Infections Using Whole Genome Amplification Followed by Shotgun Sequencing. Frontiers in Cellular and Infection Microbiology. 11: 699506. PMID 34490140 DOI: 10.3389/fcimb.2021.699506   
2021 Sharma NC, Anandan S, Devanga Ragupathi NK, Muthuirulandi Sethuvel DP, Vasudevan K, Kumar D, Gupta SK, Sangal L, Veeraraghavan B. Genetic Diversity of Clinical ST2 Strains in comparison with Vaccine Reference Strains of India. Journal of Genomics. 9: 38-42. PMID 34527084 DOI: 10.7150/jgen.58823   
2021 Wang ZF, Chang LW, Cao HL. The complete chloroplast genome of (Ericaceae). Mitochondrial Dna. Part B, Resources. 6: 2538-2540. PMID 34377822 DOI: 10.1080/23802359.2021.1959439   
2021 You MP, Akhatar J, Mittal M, Barbetti MJ, Maina S, Banga SS. Comparative analysis of draft genome assemblies developed from whole genome sequences of two isolate samples differing in field virulence on . Biotechnology Reports (Amsterdam, Netherlands). 31: e00653. PMID 34258242 DOI: 10.1016/j.btre.2021.e00653   
2021 Chen W, Ren ZH, Tang N, Chai G, Zhang H, Zhang Y, Ma J, Wu Z, Shen X, Huang X, Luo GZ, Ji Q. Targeted genetic screening in bacteria with a Cas12k-guided transposase. Cell Reports. 36: 109635. PMID 34469724 DOI: 10.1016/j.celrep.2021.109635   
2021 Umarov R, Li Y, Arakawa T, Takizawa S, Gao X, Arner E. ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation. Plos Computational Biology. 17: e1009376. PMID 34491989 DOI: 10.1371/journal.pcbi.1009376   
2021 Anene-Nzelu CG, Lee MCJ, Tan WLW, Dashi A, Foo RSY. Genomic enhancers in cardiac development and disease. Nature Reviews. Cardiology. PMID 34381190 DOI: 10.1038/s41569-021-00597-2   
2021 Xu Y, Fang B, Yu J. The complete chloroplast genome sequence of 'Weiwang'. Mitochondrial Dna. Part B, Resources. 6: 2353-2354. PMID 34345694 DOI: 10.1080/23802359.2021.1950060   
2021 Lee G, Kim MJ, Shin JH. Data on complete genome sequence and annotation of LMG 24727. Data in Brief. 38: 107271. PMID 34430681 DOI: 10.1016/j.dib.2021.107271   
2021 Galvez LC, Koh RBL, Barbosa CFC, Asunto JC, Catalla JL, Atienza RG, Costales KT, Aquino VM, Zhang D. Sequencing and de Novo Assembly of Abaca ( Née) var. Abuab Genome. Genes. 12. PMID 34440376 DOI: 10.3390/genes12081202   
2021 Xu J, Liu C, Song Y, Li M. Comparative Analysis of the Chloroplast Genome for Four Species: Molecular Structure and Phylogenetic Relationships. Frontiers in Genetics. 12: 687844. PMID 34386040 DOI: 10.3389/fgene.2021.687844   
2021 Li M, Yan S, Fanning S, Li F, Xu J. Whole Genome Analysis of Three Multi-Drug Resistant and Genomic Insights Into Their Relatedness With Resistant . Frontiers in Microbiology. 12: 694361. PMID 34367093 DOI: 10.3389/fmicb.2021.694361   
2021 Tu JL, Bai XY, Xu YL, Li N, Xu JW. Targeted gene insertion and replacement in the basidiomycete by inactivation of non-homologous end joining using CRISPR/Cas9. Applied and Environmental Microbiology. AEM0151021. PMID 34524900 DOI: 10.1128/AEM.01510-21   
2021 Bradley AA, Laughlin Z, Torres S, Cozy LM. Draft Genome Sequences of the Three Strains AB1, ST3, and ZL223. Microbiology Resource Announcements. 10: e0045121. PMID 34323604 DOI: 10.1128/MRA.00451-21   
2021 Li O, Zhang H, Wang W, Liang Y, Chen W, Din AU, Li L, Zhou Y. Complete genome sequence and probiotic properties of LZys1 isolated from healthy human gut. Journal of Medical Microbiology. 70. PMID 34397349 DOI: 10.1099/jmm.0.001397   
2021 Liu N, Shi YE, Li J, Zhu M, Zhang T. Identification and genome analysis of strain JLU460ET, a novel steroid-degrading bacterium. 3 Biotech. 11: 404. PMID 34458066 DOI: 10.1007/s13205-021-02949-8   
2021 Ali A, Thorgaard GH, Salem M. PacBio Iso-Seq Improves the Rainbow Trout Genome Annotation and Identifies Alternative Splicing Associated With Economically Important Phenotypes. Frontiers in Genetics. 12: 683408. PMID 34335690 DOI: 10.3389/fgene.2021.683408