Thomas la Cour Jansen - Publications

Affiliations: 
University of Groningen, Groningen, Netherlands 
Area:
Computational Spectroscopy, Proteins, Light Harvesting
Website:
http://fwn-nb4-7-208.chem.rug.nl/~lacour/

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Bondarenko AS, Knoester J, Jansen TL. Comparison of methods to study excitation energy transfer in molecular multichromophoric systems Chemical Physics. 529: 110478. DOI: 10.1016/J.Chemphys.2019.110478  0.38
2019 Jansen T. Unraveling Molecular Packing in Two-Dimensional Excitonic Systems Chem. 5: 3010-3012. DOI: 10.1016/J.Chempr.2019.11.011  0.329
2017 Johnson PJ, Farag MH, Halpin A, Morizumi T, Prokhorenko VI, Knoester J, Jansen TL, Ernst OP, Miller RJ. The Primary Photochemistry of Vision Occurs at the Molecular Speed Limit. The Journal of Physical Chemistry. B. PMID 28358485 DOI: 10.1021/Acs.Jpcb.7B02329  0.691
2017 Selig O, Sadhanala A, Müller C, Lovrincic R, Chen Z, Rezus YL, Frost JM, Jansen TL, Bakulin AA. Organic Cation Rotation and Immobilisation in Pure and Mixed Methylammonium Lead-Halide Perovskites. Journal of the American Chemical Society. PMID 28240902 DOI: 10.1021/Jacs.6B12239  0.38
2016 Tempelaar R, Koster LJ, Havenith RW, Knoester J, Jansen TL. Correction to "Charge Recombination Suppressed by Destructive Quantum Interference in Heterojunction Materials". The Journal of Physical Chemistry Letters. 3659. PMID 27598409 DOI: 10.1021/Acs.Jpclett.6B01956  0.741
2016 Farag MH, Jansen TL, Knoester J. Probing the Interstate Coupling near a Conical Intersection by Optical Spectroscopy. The Journal of Physical Chemistry Letters. 3328-3334. PMID 27509384 DOI: 10.1021/Acs.Jpclett.6B01463  0.692
2016 Cunha AV, Bondarenko AS, Jansen TL. Assessing spectral simulation protocols for the amide I band of proteins. Journal of Chemical Theory and Computation. PMID 27348022 DOI: 10.1021/Acs.Jctc.6B00420  0.365
2016 Shi L, Skinner JL, Jansen TL. Two-dimensional infrared spectroscopy of neat ice Ih. Physical Chemistry Chemical Physics : Pccp. PMID 26765972 DOI: 10.1039/C5Cp07264F  0.374
2015 Bakulin AA, Selig O, Bakker HJ, Rezus YL, Müller C, Glaser T, Lovrincic R, Sun Z, Chen Z, Walsh A, Frost JM, Jansen TL. Real-Time Observation of Organic Cation Reorientation in Methylammonium Lead Iodide Perovskites. The Journal of Physical Chemistry Letters. 6: 3663-3669. PMID 26722739 DOI: 10.1021/Acs.Jpclett.5B01555  0.383
2015 Tempelaar R, Koster LJ, Havenith RW, Knoester J, Jansen TL. Charge Recombination Suppressed by Destructive Quantum Interference in Heterojunction Materials. The Journal of Physical Chemistry Letters. 198-203. PMID 26683652 DOI: 10.1021/Acs.Jpclett.5B02580  0.751
2015 Tempelaar R, Halpin A, Johnson PJ, Cai J, Murphy RS, Knoester J, Miller RJ, Jansen TL. Laser-Limited Signatures of Quantum Coherence. The Journal of Physical Chemistry. A. PMID 26558888 DOI: 10.1021/Acs.Jpca.5B10312  0.777
2015 Shinokita K, Cunha AV, Jansen TL, Pshenichnikov MS. Hydrogen bond dynamics in bulk alcohols. The Journal of Chemical Physics. 142: 212450. PMID 26049470 DOI: 10.1063/1.4921574  0.32
2015 Bondarenko AS, Jansen TL. Application of two-dimensional infrared spectroscopy to benchmark models for the amide I band of proteins. The Journal of Chemical Physics. 142: 212437. PMID 26049457 DOI: 10.1063/1.4919716  0.413
2015 Kruiger JF, van der Vegte CP, Jansen TL. Suppressing sampling noise in linear and two-dimensional spectral simulations. The Journal of Chemical Physics. 142: 054201. PMID 25662638 DOI: 10.1063/1.4907277  0.331
2015 van der Vegte CP, Prajapati JD, Kleinekathöfer U, Knoester J, Jansen TL. Atomistic modeling of two-dimensional electronic spectra and excited-state dynamics for a Light Harvesting 2 complex. The Journal of Physical Chemistry. B. 119: 1302-13. PMID 25554919 DOI: 10.1021/Jp509247P  0.455
2014 Tempelaar R, Spano FC, Knoester J, Jansen TL. Mapping the Evolution of Spatial Exciton Coherence through Time-Resolved Fluorescence. The Journal of Physical Chemistry Letters. 5: 1505-10. PMID 26270087 DOI: 10.1021/Jz500488U  0.765
2014 Tempelaar R, Jansen TL, Knoester J. Vibrational beatings conceal evidence of electronic coherence in the FMO light-harvesting complex. The Journal of Physical Chemistry. B. 118: 12865-72. PMID 25321492 DOI: 10.1021/Jp510074Q  0.77
2014 van der Vegte CP, Knop S, Vöhringer P, Knoester J, Jansen TL. OH-stretching in synthetic hydrogen-bonded chains. The Journal of Physical Chemistry. B. 118: 6256-64. PMID 24820546 DOI: 10.1021/Jp504267H  0.381
2014 Jansen TL. Linear absorption and two-dimensional infrared spectra of N-methylacetamide in chloroform revisited: polarizability and multipole effects. The Journal of Physical Chemistry. B. 118: 8162-9. PMID 24666193 DOI: 10.1021/Jp5012445  0.416
2014 Halpin A, Johnson PJ, Tempelaar R, Murphy RS, Knoester J, Jansen TL, Miller RJ. Two-dimensional spectroscopy of a molecular dimer unveils the effects of vibronic coupling on exciton coherences. Nature Chemistry. 6: 196-201. PMID 24557133 DOI: 10.1038/Nchem.1834  0.794
2013 Liang C, Louhivuori M, Marrink SJ, Jansen TL, Knoester J. Vibrational Spectra of a Mechanosensitive Channel. The Journal of Physical Chemistry Letters. 4: 448-52. PMID 26281739 DOI: 10.1021/Jz3019258  0.668
2013 Bakulin AA, Cringus D, Pieniazek PA, Skinner JL, Jansen TL, Pshenichnikov MS. Dynamics of water confined in reversed micelles: multidimensional vibrational spectroscopy study. The Journal of Physical Chemistry. B. 117: 15545-58. PMID 23980543 DOI: 10.1021/Jp405853J  0.359
2013 Liang C, Jansen TL. Simulation of two-dimensional sum-frequency generation response functions: application to amide I in proteins. The Journal of Physical Chemistry. B. 117: 6937-45. PMID 23656353 DOI: 10.1021/Jp403111J  0.36
2013 Tempelaar R, van der Vegte CP, Knoester J, Jansen TL. Surface hopping modeling of two-dimensional spectra. The Journal of Chemical Physics. 138: 164106. PMID 23635110 DOI: 10.1063/1.4801519  0.782
2013 van der Vegte CP, Dijkstra AG, Knoester J, Jansen TL. Calculating two-dimensional spectra with the mixed quantum-classical Ehrenfest method. The Journal of Physical Chemistry. A. 117: 5970-80. PMID 23360103 DOI: 10.1021/Jp311668R  0.452
2012 Liang C, Jansen TL. An Efficient N(3)-Scaling Propagation Scheme for Simulating Two-Dimensional Infrared and Visible Spectra. Journal of Chemical Theory and Computation. 8: 1706-13. PMID 26593664 DOI: 10.1021/Ct300045C  0.387
2012 Liang C, Knoester J, Jansen TL. Proton transport in a membrane protein channel: two-dimensional infrared spectrum modeling. The Journal of Physical Chemistry. B. 116: 6336-45. PMID 22591443 DOI: 10.1021/Jp3019827  0.666
2012 Lessing J, Roy S, Reppert M, Baer M, Marx D, Jansen TL, Knoester J, Tokmakoff A. Identifying residual structure in intrinsically disordered systems: a 2D IR spectroscopic study of the GVGXPGVG peptide. Journal of the American Chemical Society. 134: 5032-5. PMID 22356513 DOI: 10.1021/Ja2114135  0.653
2011 Roy S, Lessing J, Meisl G, Ganim Z, Tokmakoff A, Knoester J, Jansen TL. Solvent and conformation dependence of amide I vibrations in peptides and proteins containing proline. The Journal of Chemical Physics. 135: 234507. PMID 22191886 DOI: 10.1063/1.3665417  0.68
2011 Liang C, Jansen TL. Proton transport in a binary biomimetic solution revealed by molecular dynamics simulation. The Journal of Chemical Physics. 135: 114502. PMID 21950866 DOI: 10.1063/1.3636381  0.323
2011 Olbrich C, Jansen TL, Liebers J, Aghtar M, Strümpfer J, Schulten K, Knoester J, Kleinekathöfer U. From atomistic modeling to excitation transfer and two-dimensional spectra of the FMO light-harvesting complex. The Journal of Physical Chemistry. B. 115: 8609-21. PMID 21635010 DOI: 10.1021/Jp202619A  0.725
2011 Liang C, Jansen TL, Knoester J. Proton transport in biological systems can be probed by two-dimensional infrared spectroscopy. The Journal of Chemical Physics. 134: 044502. PMID 21280743 DOI: 10.1063/1.3522770  0.662
2011 Roy S, Pshenichnikov MS, Jansen TL. Analysis of 2D CS spectra for systems with non-gaussian dynamics. The Journal of Physical Chemistry. B. 115: 5431-40. PMID 21235275 DOI: 10.1021/Jp109742P  0.376
2011 Dijkstra AG, Jansen Tl, Knoester J. Modeling the vibrational dynamics and nonlinear infrared spectra of coupled amide I and II modes in peptides. The Journal of Physical Chemistry. B. 115: 5392-401. PMID 21208013 DOI: 10.1021/Jp109431A  0.706
2010 Smith AW, Lessing J, Ganim Z, Peng CS, Tokmakoff A, Roy S, Jansen TL, Knoester J. Melting of a beta-hairpin peptide using isotope-edited 2D IR spectroscopy and simulations. The Journal of Physical Chemistry. B. 114: 10913-24. PMID 20690697 DOI: 10.1021/Jp104017H  0.658
2010 Jansen TL, Auer BM, Yang M, Skinner JL. Two-dimensional infrared spectroscopy and ultrafast anisotropy decay of water. The Journal of Chemical Physics. 132: 224503. PMID 20550404 DOI: 10.1063/1.3454733  0.418
2010 Dijkstra AG, Jansen TL, Knoester J. Two-dimensional spectroscopy of extended molecular systems: applications to energy transport and relaxation in an alpha-helix. The Journal of Physical Chemistry. A. 114: 7315-20. PMID 20509640 DOI: 10.1021/Jp9111124  0.711
2009 Jansen TL, Cringus D, Pshenichnikov MS. Dissimilar dynamics of coupled water vibrations. The Journal of Physical Chemistry. A. 113: 6260-5. PMID 19438222 DOI: 10.1021/Jp900480R  0.41
2009 Jansen TL, Knoester J. Waiting time dynamics in two-dimensional infrared spectroscopy. Accounts of Chemical Research. 42: 1405-11. PMID 19391619 DOI: 10.1021/Ar900025A  0.7
2008 Bloem R, Dijkstra AG, Jansen Tl, Knoester J. Simulation of vibrational energy transfer in two-dimensional infrared spectroscopy of amide I and amide II modes in solution. The Journal of Chemical Physics. 129: 055101. PMID 18698926 DOI: 10.1063/1.2961020  0.71
2008 Jansen Tl, Knoester J. Two-dimensional infrared population transfer spectroscopy for enhancing structural markers of proteins. Biophysical Journal. 94: 1818-25. PMID 17981904 DOI: 10.1529/Biophysj.107.118851  0.696
2007 Jansen Tl, Knoester J. Calculation of two-dimensional infrared spectra of ultrafast chemical exchange with numerical Langevin simulations. The Journal of Chemical Physics. 127: 234502. PMID 18154395 DOI: 10.1063/1.2806179  0.68
2007 Dijkstra AG, Jansen Tl, Bloem R, Knoester J. Vibrational relaxation in simulated two-dimensional infrared spectra of two amide modes in solution. The Journal of Chemical Physics. 127: 194505. PMID 18035890 DOI: 10.1063/1.2786455  0.72
2007 Cringus D, Jansen TL, Pshenichnikov MS, Wiersma DA. Ultrafast anisotropy dynamics of water molecules dissolved in acetonitrile. The Journal of Chemical Physics. 127: 084507. PMID 17764269 DOI: 10.1063/1.2771178  0.6
2006 DeVane R, Space B, Jansen TL, Keyes T. Time correlation function and finite field approaches to the calculation of the fifth order Raman response in liquid xenon. The Journal of Chemical Physics. 125: 234501. PMID 17190561 DOI: 10.1063/1.2403129  0.336
2006 Jansen Tl, Knoester J. Nonadiabatic effects in the two-dimensional infrared spectra of peptides: application to alanine dipeptide. The Journal of Physical Chemistry. B. 110: 22910-6. PMID 17092043 DOI: 10.1021/Jp064795T  0.715
2006 Milne CJ, Li YL, Jansen TL, Huang L, Miller RJ. Fifth-order Raman spectroscopy of liquid benzene: experiment and theory. The Journal of Physical Chemistry. B. 110: 19867-76. PMID 17020372 DOI: 10.1021/Jp062063V  0.347
2005 Jansen Tl, Hayashi T, Zhuang W, Mukamel S. Stochastic Liouville equations for hydrogen-bonding fluctuations and their signatures in two-dimensional vibrational spectroscopy of water. The Journal of Chemical Physics. 123: 114504. PMID 16392570 DOI: 10.1063/1.2008251  0.632
2004 Jansen Tl, Zhuang W, Mukamel S. Stochastic Liouville equation simulation of multidimensional vibrational line shapes of trialanine. The Journal of Chemical Physics. 121: 10577-98. PMID 15549941 DOI: 10.1063/1.1807824  0.629
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