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Timothy J. Griffin - Publications

Biochemistry, Molecular Biology and Biophysics University of Minnesota, Twin Cities, Minneapolis, MN 
development and application of mass spectrometry-based tools to study proteins and proteomes

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Year Citation  Score
2019 Sandri BJ, Masvidal L, Murie C, Bartish M, Avdulov S, Higgins L, Markowski T, Peterson M, Bergh J, Yang P, Rolny C, Limper AH, Griffin TJ, Bitterman PB, Wendt CH, et al. Distinct Cancer-Promoting Stromal Gene Expression Depending on Lung Function. American Journal of Respiratory and Critical Care Medicine. PMID 30742544 DOI: 10.1164/rccm.201801-0080OC  0.72
2018 Wendt CH, Sandri BJ, Masvidal L, Murie C, Bartish M, Avdulov S, Higgins L, Markowski T, Peterson M, Bergh J, Yang P, Rolny C, Limper AH, Griffin TJ, Bitterman PB, et al. Chronic Obstructive Pulmonary Disease Phenotype Dictates Cancer-Promoting Stromal Gene Expression Programs. Annals of the American Thoracic Society. 15: S290-S291. PMID 30759015 DOI: 10.1513/AnnalsATS.201806-421MG  0.72
2018 Kumar P, Panigrahi P, Johnson J, Weber WJ, Mehta S, Sajulga R, Easterly C, Crooker BA, Heydarian M, Anamika K, Griffin TJ, Jagtap P. QuanTP: A software resource for quantitative proteo-transcriptomic comparative data analysis and informatics. Journal of Proteome Research. PMID 30582332 DOI: 10.1021/acs.jproteome.8b00727  0.36
2018 Johnson JE, Kumar P, Easterly C, Esler M, Mehta S, Eschenlauer AC, Hegeman AD, Jagtap PD, Griffin TJ. Improve your Galaxy text life: The Query Tabular Tool. F1000research. 7: 1604. PMID 30519459 DOI: 10.12688/f1000research.16450.1  0.56
2018 Argentini A, Staes A, Grüning BA, Mehta S, Easterly C, Griffin TJ, Jagtap P, Impens F, Martens L. An update on the moFF Algorithm for label-free quantitative proteomics. Journal of Proteome Research. PMID 30511867 DOI: 10.1021/acs.jproteome.8b00708  0.36
2018 Jagtap PD, Viken KJ, Johnson J, McGowan T, Pendleton KM, Griffin TJ, Hunter RC, Rudney JD, Bhargava M. BAL Fluid Metaproteome in Acute Respiratory Failure. American Journal of Respiratory Cell and Molecular Biology. 59: 648-652. PMID 30382775 DOI: 10.1165/rcmb.2018-0068LE  0.56
2018 Folsom TD, Higgins L, Markowski TW, Griffin TJ, Fatemi SH. Quantitative proteomics of forebrain subcellular fractions in fragile X mental retardation 1 knockout mice following acute treatment with 2-Methyl-6-(phenylethynyl)pyridine: Relevance to Developmental Study of Schizophrenia. Synapse (New York, N.Y.). PMID 30176067 DOI: 10.1002/syn.22069  0.72
2018 Sajulga R, Mehta S, Kumar P, Johnson JE, Guerrero CR, Ryan MC, Karchin R, Jagtap PD, Griffin TJ. Bridging the Chromosome-Centric and Biology and Disease Human Proteome Projects: Accessible and automated tools for interpreting biological and pathological impact of protein sequence variants detected via proteogenomics. Journal of Proteome Research. PMID 30130115 DOI: 10.1021/acs.jproteome.8b00404  0.56
2018 Afiuni-Zadeh S, Boylan KLM, Jagtap PD, Griffin TJ, Rudney JD, Peterson ML, Skubitz APN. Evaluating the potential of residual Pap test fluid as a resource for the metaproteomic analysis of the cervical-vaginal microbiome. Scientific Reports. 8: 10868. PMID 30022083 DOI: 10.1038/s41598-018-29092-4  0.56
2018 Sandri BJ, Kaplan A, Hodgson SW, Peterson M, Avdulov S, Higgins L, Markowski T, Yang P, Limper AH, Griffin TJ, Bitterman P, Lock EF, Wendt CH. Multi-Omic Molecular Profiling of Lung Cancer in Chronic Obstructive Pulmonary Disease. The European Respiratory Journal. PMID 29794131 DOI: 10.1183/13993003.02665-2017  0.72
2018 Blank C, Easterly C, Gruening B, Johnson J, Kolmeder CA, Kumar P, May D, Mehta S, Mesuere B, Brown Z, Elias JE, Hervey WJ, McGowan T, Muth T, Nunn B, ... ... Griffin TJ, et al. Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework. Proteomes. 6. PMID 29385081 DOI: 10.3390/proteomes6010007  0.56
2018 Torres SMF, Furrow E, Souza CP, Granick JL, de Jong EP, Griffin TJ, Wang X. Salivary proteomics of healthy dogs: An in depth catalog. Plos One. 13: e0191307. PMID 29329347 DOI: 10.1371/journal.pone.0191307  0.76
2018 Park JM, Seo M, Jung CH, Grunwald D, Stone M, Otto NM, Toso E, Ahn Y, Kyba M, Griffin TJ, Higgins L, Kim DH. ULK1 phosphorylates Ser30 of BECN1 in association with ATG14 to stimulate autophagy induction. Autophagy. 1-28. PMID 29313410 DOI: 10.1080/15548627.2017.1422851  0.72
2017 Chambers MC, Jagtap PD, Johnson JE, McGowan T, Kumar P, Onsongo G, Guerrero CR, Barsnes H, Vaudel M, Martens L, Grüning B, Cooke IR, Heydarian M, Reddy KL, Griffin TJ. An Accessible Proteogenomics Informatics Resource for Cancer Researchers. Cancer Research. 77: e43-e46. PMID 29092937 DOI: 10.1158/0008-5472.CAN-17-0331  0.64
2016 Van Riper SK, Higgins L, Carlis JV, Griffin TJ. RIPPER: a framework for MS1 only metabolomics and proteomics label-free relative quantification. Bioinformatics (Oxford, England). PMID 27153682 DOI: 10.1093/bioinformatics/btw091  0.76
2016 Thu YM, Van Riper SK, Higgins L, Zhang T, Becker JR, Markowski TW, Nguyen HD, Griffin TJ, Bielinsky AK. Slx5/Slx8 Promotes Replication Stress Tolerance by Facilitating Mitotic Progression. Cell Reports. PMID 27134171 DOI: 10.1016/j.celrep.2016.04.017  0.96
2016 Anderson KJ, Vermillion KL, Jagtap P, Johnson JE, Griffin TJ, Andrews MT. Proteogenomic analysis of a hibernating mammal indicates contribution of skeletal muscle physiology to the hibernation phenotype. Journal of Proteome Research. PMID 26903422 DOI: 10.1021/acs.jproteome.5b01138  0.96
2015 Rudney JD, Jagtap PD, Reilly CS, Chen R, Markowski TW, Higgins L, Johnson JE, Griffin TJ. Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries. Microbiome. 3: 69. PMID 26684897 DOI: 10.1186/s40168-015-0136-z  0.72
2015 Barnidge DR, Krick TP, Griffin TJ, Murray DL. Using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry to detect monoclonal immunoglobulin light chains in serum and urine. Rapid Communications in Mass Spectrometry : Rcm. 29: 2057-60. PMID 26443406 DOI: 10.1002/rcm.7314  0.96
2015 Vermillion KL, Jagtap P, Johnson JE, Griffin TJ, Andrews MT. Characterizing cardiac molecular mechanisms of mammalian hibernation via quantitative proteogenomics. Journal of Proteome Research. PMID 26435507 DOI: 10.1021/acs.jproteome.5b00575  0.96
2015 Chang JW, Zhang W, Yeh HS, de Jong EP, Jun S, Kim KH, Bae SS, Beckman K, Hwang TH, Kim KS, Kim DH, Griffin TJ, Kuang R, Yong J. mRNA 3'-UTR shortening is a molecular signature of mTORC1 activation. Nature Communications. 6: 7218. PMID 26074333 DOI: 10.1038/ncomms8218  0.96
2015 Jagtap PD, Blakely A, Murray K, Stewart S, Kooren J, Johnson JE, Rhodus NL, Rudney J, Griffin TJ. Metaproteomic analysis using the Galaxy framework. Proteomics. PMID 26058579 DOI: 10.1002/pmic.201500074  0.96
2015 Boekel J, Chilton JM, Cooke IR, Horvatovich PL, Jagtap PD, Käll L, Lehtiö J, Lukasse P, Moerland PD, Griffin TJ. Multi-omic data analysis using Galaxy. Nature Biotechnology. 33: 137-9. PMID 25658277 DOI: 10.1038/nbt.3134  0.96
2015 Thumbigere-Math V, Michalowicz BS, de Jong EP, Griffin TJ, Basi DL, Hughes PJ, Tsai ML, Swenson KK, Rockwell L, Gopalakrishnan R. Salivary proteomics in bisphosphonate-related osteonecrosis of the jaw. Oral Diseases. 21: 46-56. PMID 24286378 DOI: 10.1111/odi.12204  0.96
2015 Griffin TJ. The human saliva proteome: Overview and emerging methods for characterization Proceedings of Spie - the International Society For Optical Engineering. 9490. DOI: 10.1117/12.2183316  0.96
2014 Jagtap PD, Johnson JE, Onsongo G, Sadler FW, Murray K, Wang Y, Shenykman GM, Bandhakavi S, Smith LM, Griffin TJ. Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework. Journal of Proteome Research. 13: 5898-908. PMID 25301683 DOI: 10.1021/pr500812t  0.96
2014 Sheynkman GM, Johnson JE, Jagtap PD, Shortreed MR, Onsongo G, Frey BL, Griffin TJ, Smith LM. Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations. Bmc Genomics. 15: 703. PMID 25149441 DOI: 10.1186/1471-2164-15-703  0.96
2014 Boylan KL, Afiuni-Zadeh S, Geller MA, Hickey K, Griffin TJ, Pambuccian SE, Skubitz AP. A feasibility study to identify proteins in the residual Pap test fluid of women with normal cytology by mass spectrometry-based proteomics. Clinical Proteomics. 11: 30. PMID 25097468 DOI: 10.1186/1559-0275-11-30  0.96
2014 Yang Y, Rhodus NL, Ondrey FG, Wuertz BR, Chen X, Zhu Y, Griffin TJ. Quantitative proteomic analysis of oral brush biopsies identifies secretory leukocyte protease inhibitor as a promising, mechanism-based oral cancer biomarker. Plos One. 9: e95389. PMID 24748380 DOI: 10.1371/journal.pone.0095389  0.96
2014 Van Riper SK, de Jong EP, Higgins L, Carlis JV, Griffin TJ. Improved intensity-based label-free quantification via proximity-based intensity normalization (PIN). Journal of Proteome Research. 13: 1281-92. PMID 24571364 DOI: 10.1021/pr400866r  0.96
2014 Griffin TJ. Human saliva proteome: An overview Proceedings of Spie - the International Society For Optical Engineering. 9112. DOI: 10.1117/12.2058731  0.96
2013 Jagtap P, Goslinga J, Kooren JA, McGowan T, Wroblewski MS, Seymour SL, Griffin TJ. A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies. Proteomics. 13: 1352-7. PMID 23412978 DOI: 10.1002/pmic.201200352  0.96
2013 Van Riper SK, de Jong EP, Carlis JV, Griffin TJ. Mass spectrometry-based proteomics: basic principles and emerging technologies and directions. Advances in Experimental Medicine and Biology. 990: 1-35. PMID 23378000 DOI: 10.1007/978-94-007-5896-4_1  0.96
2013 Griffin TJ. The proteome of human saliva Proceedings of Spie - the International Society For Optical Engineering. 8723. DOI: 10.1117/12.2020012  0.96
2012 Reed JR, Stone MD, Beadnell TC, Ryu Y, Griffin TJ, Schwertfeger KL. Fibroblast growth factor receptor 1 activation in mammary tumor cells promotes macrophage recruitment in a CX3CL1-dependent manner. Plos One. 7: e45877. PMID 23029290 DOI: 10.1371/journal.pone.0045877  0.96
2012 de Jong EP, Griffin TJ. Online nanoscale ERLIC-MS outperforms RPLC-MS for shotgun proteomics in complex mixtures. Journal of Proteome Research. 11: 5059-64. PMID 22950739 DOI: 10.1021/pr300638n  0.96
2012 Curtis JM, Hahn WS, Stone MD, Inda JJ, Droullard DJ, Kuzmicic JP, Donoghue MA, Long EK, Armien AG, Lavandero S, Arriaga E, Griffin TJ, Bernlohr DA. Protein carbonylation and adipocyte mitochondrial function. The Journal of Biological Chemistry. 287: 32967-80. PMID 22822087 DOI: 10.1074/jbc.M112.400663  0.96
2012 Jagtap P, Bandhakavi S, Higgins L, McGowan T, Sa R, Stone MD, Chilton J, Arriaga EA, Seymour SL, Griffin TJ. Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm. Proteomics. 12: 1726-30. PMID 22623410 DOI: 10.1002/pmic.201100097  0.96
2012 Yoder AR, Robinson JW, Dickey DM, Andersland J, Rose BA, Stone MD, Griffin TJ, Potter LR. A functional screen provides evidence for a conserved, regulatory, juxtamembrane phosphorylation site in guanylyl cyclase a and B. Plos One. 7: e36747. PMID 22590601 DOI: 10.1371/journal.pone.0036747  0.96
2012 Kim YM, Stone M, Hwang TH, Kim YG, Dunlevy JR, Griffin TJ, Kim DH. SH3BP4 is a negative regulator of amino acid-Rag GTPase-mTORC1 signaling. Molecular Cell. 46: 833-46. PMID 22575674 DOI: 10.1016/j.molcel.2012.04.007  0.96
2012 Jagtap P, McGowan T, Bandhakavi S, Tu ZJ, Seymour S, Griffin TJ, Rudney JD. Deep metaproteomic analysis of human salivary supernatant. Proteomics. 12: 992-1001. PMID 22522805 DOI: 10.1002/pmic.201100503  0.96
2012 Keefe DF, Gupta A, Feldman D, Carlis JV, Krehbiel Keefe S, Griffin TJ. Scaling up multi-touch selection and querying: Interfaces and applications for combining mobile multi-touch input with large-scale visualization displays International Journal of Human Computer Studies. 70: 703-713. DOI: 10.1016/j.ijhcs.2012.05.004  0.96
2012 Kooren JA, Rhodus NL, Griffin TJ. Emerging non-invasively collected genomic and proteomic biomarkers for the early diagnosis of oral squamous cell carcinoma (OSCC) Squamous Cell Carcinoma. 197-210.  0.96
2011 Bandhakavi S, Markowski TW, Xie H, Griffin TJ. Three-dimensional peptide fractionation for highly sensitive nanoscale LC-based shotgun proteomic analysis of complex protein mixtures. Methods in Molecular Biology (Clifton, N.J.). 790: 47-56. PMID 21948405 DOI: 10.1007/978-1-61779-319-6_4  0.96
2011 Griffin TJ, Bandhakavi S. Dynamic range compression: a solution for proteomic biomarker discovery? Bioanalysis. 3: 2053-6. PMID 21942515 DOI: 10.4155/bio.11.206  0.96
2011 Kooren JA, Rhodus NL, Tang C, Jagtap PD, Horrigan BJ, Griffin TJ. Evaluating the potential of a novel oral lesion exudate collection method coupled with mass spectrometry-based proteomics for oral cancer biomarker discovery. Clinical Proteomics. 8: 13. PMID 21914210 DOI: 10.1186/1559-0275-8-13  0.96
2011 de Jong EP, van Riper SK, Koopmeiners JS, Carlis JV, Griffin TJ. Sample collection and handling considerations for peptidomic studies in whole saliva; implications for biomarker discovery. Clinica Chimica Acta; International Journal of Clinical Chemistry. 412: 2284-8. PMID 21889499 DOI: 10.1016/j.cca.2011.08.023  0.96
2011 Stone MD, Chen X, McGowan T, Bandhakavi S, Cheng B, Rhodus NL, Griffin TJ. Large-scale phosphoproteomics analysis of whole saliva reveals a distinct phosphorylation pattern. Journal of Proteome Research. 10: 1728-36. PMID 21299198 DOI: 10.1021/pr1010247  0.96
2011 Bandhakavi S, Van Riper SK, Tawfik PN, Stone MD, Haddad T, Rhodus NL, Carlis JV, Griffin TJ. Hexapeptide libraries for enhanced protein PTM identification and relative abundance profiling in whole human saliva. Journal of Proteome Research. 10: 1052-61. PMID 21142092 DOI: 10.1021/pr100857t  0.96
2011 Lin SS, Goh T, Griffin TJ, Hu WS. Comparative transcriptomic and proteomic profiling of high ethanol-producing Clostridium thermocellum Acs National Meeting Book of Abstracts 0.96
2010 Yoder AR, Stone MD, Griffin TJ, Potter LR. Mass spectrometric identification of phosphorylation sites in guanylyl cyclase A and B. Biochemistry. 49: 10137-45. PMID 20977274 DOI: 10.1021/bi101700e  0.96
2010 Stone MD, Odland RM, McGowan T, Onsongo G, Tang C, Rhodus NL, Jagtap P, Bandhakavi S, Griffin TJ. Novel In Situ Collection of Tumor Interstitial Fluid from a Head and Neck Squamous Carcinoma Reveals a Unique Proteome with Diagnostic Potential. Clinical Proteomics. 6: 75-82. PMID 20930922 DOI: 10.1007/s12014-010-9050-3  0.96
2010 Onsongo G, Stone MD, Van Riper SK, Chilton J, Wu B, Higgins L, Lund TC, Carlis JV, Griffin TJ. LTQ-iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments. Proteomics. 10: 3533-8. PMID 20821806 DOI: 10.1002/pmic.201000189  0.96
2010 de Jong EP, Xie H, Onsongo G, Stone MD, Chen XB, Kooren JA, Refsland EW, Griffin RJ, Ondrey FG, Wu B, Le CT, Rhodus NL, Carlis JV, Griffin TJ. Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions. Plos One. 5: e11148. PMID 20567502 DOI: 10.1371/journal.pone.0011148  0.96
2010 Yee JC, Jacob NM, Jayapal KP, Kok YJ, Philp R, Griffin TJ, Hu WS. Global assessment of protein turnover in recombinant antibody producing myeloma cells. Journal of Biotechnology. 148: 182-93. PMID 20540971 DOI: 10.1016/j.jbiotec.2010.06.005  0.96
2010 Roe MR, McGowan TF, Thompson LV, Griffin TJ. Targeted 18O-labeling for improved proteomic analysis of carbonylated peptides by mass spectrometry. Journal of the American Society For Mass Spectrometry. 21: 1190-203. PMID 20434358 DOI: 10.1016/j.jasms.2010.03.029  0.96
2010 Rudney JD, Xie H, Rhodus NL, Ondrey FG, Griffin TJ. A metaproteomic analysis of the human salivary microbiota by three-dimensional peptide fractionation and tandem mass spectrometry. Molecular Oral Microbiology. 25: 38-49. PMID 20331792 DOI: 10.1111/j.2041-1014.2009.00558.x  0.96
2010 Jayapal KP, Sui S, Philp RJ, Kok YJ, Yap MG, Griffin TJ, Hu WS. Multitagging proteomic strategy to estimate protein turnover rates in dynamic systems. Journal of Proteome Research. 9: 2087-97. PMID 20184388 DOI: 10.1021/pr9007738  0.96
2010 Bandhakavi S, Kim YM, Ro SH, Xie H, Onsongo G, Jun CB, Kim DH, Griffin TJ. Quantitative nuclear proteomics identifies mTOR regulation of DNA damage response. Molecular & Cellular Proteomics : McP. 9: 403-14. PMID 19955088 DOI: 10.1074/mcp.M900326-MCP200  0.96
2010 Onsongo G, Xie H, Griffin TJ, Carlis JV. Relational operators for prioritizing candidate biomarkers in high-throughput differential expression data 2010 Acm International Conference On Bioinformatics and Computational Biology, Acm-Bcb 2010. 25-34. DOI: 10.1145/1854776.1854786  0.96
2009 Yan W, Apweiler R, Balgley BM, Boontheung P, Bundy JL, Cargile BJ, Cole S, Fang X, Gonzalez-Begne M, Griffin TJ, Hagen F, Hu S, Wolinsky LE, Lee CS, Malamud D, et al. Systematic comparison of the human saliva and plasma proteomes. Proteomics. Clinical Applications. 3: 116-134. PMID 19898684 DOI: 10.1002/prca.200800140  0.96
2009 Bandhakavi S, Stone MD, Onsongo G, Van Riper SK, Griffin TJ. A dynamic range compression and three-dimensional peptide fractionation analysis platform expands proteome coverage and the diagnostic potential of whole saliva. Journal of Proteome Research. 8: 5590-600. PMID 19813771 DOI: 10.1021/pr900675w  0.96
2008 Feng J, Xie H, Meany DL, Thompson LV, Arriaga EA, Griffin TJ. Quantitative proteomic profiling of muscle type-dependent and age-dependent protein carbonylation in rat skeletal muscle mitochondria. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 63: 1137-52. PMID 19038828  0.96
2008 Hohberger L, Wuertz BRK, Xie H, Griffin T, Ondrey F. TNF-α drives matrix metalloproteinase-9 in squamous oral carcinogenesis Laryngoscope. 118: 1395-1399. PMID 18496150 DOI: 10.1097/MLG.0b013e318174e09b  0.96
2008 Jayapal KP, Philp RJ, Kok YJ, Yap MG, Sherman DH, Griffin TJ, Hu WS. Uncovering genes with divergent mRNA-protein dynamics in Streptomyces coelicolor. Plos One. 3: e2097. PMID 18461186 DOI: 10.1371/journal.pone.0002097  0.96
2008 Grimsrud PA, Xie H, Griffin TJ, Bernlohr DA. Oxidative stress and covalent modification of protein with bioactive aldehydes. The Journal of Biological Chemistry. 283: 21837-41. PMID 18445586 DOI: 10.1074/jbc.R700019200  0.96
2008 Bandhakavi S, Xie H, O'Callaghan B, Sakurai H, Kim DH, Griffin TJ. Hsf1 activation inhibits rapamycin resistance and TOR signaling in yeast revealed by combined proteomic and genetic analysis. Plos One. 3: e1598. PMID 18270585 DOI: 10.1371/journal.pone.0001598  0.96
2008 Xie H, Onsongo G, Popko J, de Jong EP, Cao J, Carlis JV, Griffin RJ, Rhodus NL, Griffin TJ. Proteomics analysis of cells in whole saliva from oral cancer patients via value-added three-dimensional peptide fractionation and tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 7: 486-98. PMID 18045803 DOI: 10.1074/mcp.M700146-MCP200  0.96
2008 Onsongo G, Xie H, Griffin TJ, Carlis J. Generating GO slim using relational database management systems to support proteomics analysis Proceedings - Ieee Symposium On Computer-Based Medical Systems. 215-217. DOI: 10.1109/CBMS.2008.77  0.96
2007 Aebersold R, Griffin TJ, Donohoe S. Isotope-coded affinity tagging of proteins. Csh Protocols. 2007: pdb.prot4728. PMID 21357116  0.96
2007 Griffin TJ, Xie H, Bandhakavi S, Popko J, Mohan A, Carlis JV, Higgins L. iTRAQ reagent-based quantitative proteomic analysis on a linear ion trap mass spectrometer. Journal of Proteome Research. 6: 4200-9. PMID 17902639 DOI: 10.1021/pr070291b  0.96
2007 Griffin TJ, Seth G, Xie H, Bandhakavi S, Hu WS. Advancing mammalian cell culture engineering using genome-scale technologies. Trends in Biotechnology. 25: 401-8. PMID 17681628 DOI: 10.1016/j.tibtech.2007.07.004  0.96
2007 Woo SY, Kim DH, Jun CB, Kim YM, Haar EV, Lee SI, Hegg JW, Bandhakavi S, Griffin TJ, Kim DH. PRR5, a novel component of mTOR complex 2, regulates platelet-derived growth factor receptor beta expression and signaling. The Journal of Biological Chemistry. 282: 25604-12. PMID 17599906 DOI: 10.1074/jbc.M704343200  0.96
2007 Roe MR, Xie H, Bandhakavi S, Griffin TJ. Proteomic mapping of 4-hydroxynonenal protein modification sites by solid-phase hydrazide chemistry and mass spectrometry. Analytical Chemistry. 79: 3747-56. PMID 17437329 DOI: 10.1021/ac0617971  0.96
2007 Xie H, Bandhakavi S, Roe MR, Griffin TJ. Preparative peptide isoelectric focusing as a tool for improving the identification of lysine-acetylated peptides from complex mixtures. Journal of Proteome Research. 6: 2019-26. PMID 17397211 DOI: 10.1021/pr060691j  0.96
2007 Meany DL, Xie H, Thompson LV, Arriaga EA, Griffin TJ. Identification of carbonylated proteins from enriched rat skeletal muscle mitochondria using affinity chromatography-stable isotope labeling and tandem mass spectrometry. Proteomics. 7: 1150-63. PMID 17390297 DOI: 10.1002/pmic.200600450  0.96
2007 Vander Haar E, Lee SI, Bandhakavi S, Griffin TJ, Kim DH. Insulin signalling to mTOR mediated by the Akt/PKB substrate PRAS40. Nature Cell Biology. 9: 316-23. PMID 17277771 DOI: 10.1038/ncb1547  0.96
2007 Grimsrud PA, Picklo MJ, Griffin TJ, Bernlohr DA. Carbonylation of adipose proteins in obesity and insulin resistance: identification of adipocyte fatty acid-binding protein as a cellular target of 4-hydroxynonenal. Molecular & Cellular Proteomics : McP. 6: 624-37. PMID 17205980 DOI: 10.1074/mcp.M600120-MCP200  0.96
2006 Roe MR, Griffin TJ. Gel-free mass spectrometry-based high throughput proteomics: tools for studying biological response of proteins and proteomes. Proteomics. 6: 4678-87. PMID 16888762 DOI: 10.1002/pmic.200500876  0.96
2006 Xie H, Griffin TJ. Trade-off between high sensitivity and increased potential for false positive peptide sequence matches using a two-dimensional linear ion trap for tandem mass spectrometry-based proteomics. Journal of Proteome Research. 5: 1003-9. PMID 16602709 DOI: 10.1021/pr050472i  0.96
2005 Xie H, Rhodus NL, Griffin RJ, Carlis JV, Griffin TJ. A catalogue of human saliva proteins identified by free flow electrophoresis-based peptide separation and tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 4: 1826-30. PMID 16103422 DOI: 10.1074/mcp.D500008-MCP200  0.96
2005 Xie H, Bandhakavi S, Griffin TJ. Evaluating preparative isoelectric focusing of complex peptide mixtures for tandem mass spectrometry-based proteomics: a case study in profiling chromatin-enriched subcellular fractions in Saccharomyces cerevisiae. Analytical Chemistry. 77: 3198-207. PMID 15889909 DOI: 10.1021/ac0482256  0.96
2005 Xie H, Bandhakavi S, Rhodus N, Griffin RJ, Carlis JV, Griffin TJ. A high-throughput information added proteomic strategy using free flow electrophoresis and tandem mass spectrometry Aiche Annual Meeting, Conference Proceedings. 12473-12501.  0.96
2003 Griffin TJ, Lock CM, Li XJ, Patel A, Chervetsova I, Lee H, Wright ME, Ranish JA, Chen SS, Aebersold R. Abundance ratio-dependent proteomic analysis by mass spectrometry. Analytical Chemistry. 75: 867-74. PMID 12622378 DOI: 10.1021/ac026127j  0.96
2002 Gygi SP, Rist B, Griffin TJ, Eng J, Aebersold R. Proteome analysis of low-abundance proteins using multidimensional chromatography and isotope-coded affinity tags. Journal of Proteome Research. 1: 47-54. PMID 12643526 DOI: 10.1021/pr015509n  0.96
2002 Flory MR, Griffin TJ, Martin D, Aebersold R. Advances in quantitative proteomics using stable isotope tags. Trends in Biotechnology. 20: S23-9. PMID 12570156  0.96
2002 Lee H, Griffin TJ, Gygi SP, Rist B, Aebersold R. Development of a multiplexed microcapillary liquid chromatography system for high-throughput proteome analysis. Analytical Chemistry. 74: 4353-60. PMID 12236342 DOI: 10.1021/ac025757i  0.96
2002 Griffin TJ, Gygi SP, Ideker T, Rist B, Eng J, Hood L, Aebersold R. Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Molecular & Cellular Proteomics : McP. 1: 323-33. PMID 12096114  0.96
2002 Griffin TJ, Lock CM, Li XJ, Patel A, Chervetsova I, Lee H, Wright ME, Ranish JA, Chen SS, Aebersold R. Abundance-dependent proteomic analysis by mass spectrometry Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 51.  0.96
2002 Van Soest R, Varesio E, Braaf-Dragan I, Lee H, Griffin T, Aebersold R. Nano-LC MALDI-QTOF-MS for the analysis of complex ICAT labeled protein mixtures Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 289-290.  0.96
2001 Griffin TJ, Goodlett DR, Aebersold R. Advances in proteome analysis by mass spectrometry. Current Opinion in Biotechnology. 12: 607-12. PMID 11849943 DOI: 10.1016/S0958-1669(01)00268-3  0.96
2001 Griffin TJ, Han DK, Gygi SP, Rist B, Lee H, Aebersold R, Parker KC. Toward a high-throughput approach to quantitative proteomic analysis: expression-dependent protein identification by mass spectrometry. Journal of the American Society For Mass Spectrometry. 12: 1238-46. PMID 11766750 DOI: 10.1016/S1044-0305(01)00316-6  0.96
2001 Griffin TJ, Aebersold R. Advances in proteome analysis by mass spectrometry. The Journal of Biological Chemistry. 276: 45497-500. PMID 11585843 DOI: 10.1074/jbc.R100014200  0.96
2001 Griffin TJ, Gygi SP, Rist B, Aebersold R, Loboda A, Jilkine A, Ens W, Standing KG. Quantitative proteomic analysis using a MALDI quadrupole time-of-flight mass spectrometer. Analytical Chemistry. 73: 978-86. PMID 11289445 DOI: 10.1021/ac001169y  0.96
2000 Griffin TJ, Smith LM. Genetic identification by mass spectrometric analysis of single-nucleotide polymorphisms: ternary encoding of genotypes. Analytical Chemistry. 72: 3298-302. PMID 10939403 DOI: 10.1021/ac991390e  0.96
2000 Griffin TJ, Smith LM. Single-nucleotide polymorphism analysis by MALDI-TOF mass spectrometry. Trends in Biotechnology. 18: 77-84. PMID 10652512 DOI: 10.1016/S0167-7799(99)01401-8  0.96
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1998 Griffin TJ, Smith LM. An approach to predicting the stabilities of peptide nucleic acid:DNA duplexes. Analytical Biochemistry. 260: 56-63. PMID 9648653 DOI: 10.1006/abio.1998.2686  0.96
1997 Griffin TJ, Tang W, Smith LM. Genetic analysis by peptide nucleic acid affinity MALDI-TOF mass spectrometry. Nature Biotechnology. 15: 1368-72. PMID 9415888 DOI: 10.1038/nbt1297-1368  0.96
1986 Sugar A, Cohen MA, Bien PA, Griffin TJ, Heifetz CL, Mehta S. Treatment of experimental Pseudomonas corneal ulcers with enoxacin, a quinolone antibiotic. Archives of Ophthalmology (Chicago, Ill. : 1960). 104: 1230-2. PMID 3461752 DOI: 10.1001/archopht.1986.01050200136068  0.36
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