Dennis Bamford - Publications

Affiliations: 
University of Helsinki, Helsingfors, Finland 

190 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Colibus L, Roine E, Walter TS, Ilca SL, Wang X, Wang N, Roseman AM, Bamford D, Huiskonen JT, Stuart DI. Assembly of complex viruses exemplified by a halophilic euryarchaeal virus. Nature Communications. 10: 1456. PMID 30926810 DOI: 10.1038/S41467-019-09451-Z  0.01
2019 Mizuno CM, Prajapati B, Lucas-Staat S, Sime-Ngando T, Forterre P, Bamford DH, Prangishvili D, Krupovic M, Oksanen HM. Novel haloarchaeal viruses from Lake Retba infecting Haloferax and Halorubrum species. Environmental Microbiology. PMID 30920125 DOI: 10.1111/1462-2920.14604  0.01
2019 Santos-Pérez I, Charro D, Gil-Carton D, Azkargorta M, Elortza F, Bamford DH, Oksanen HM, Abrescia NGA. Structural basis for assembly of vertical single β-barrel viruses. Nature Communications. 10: 1184. PMID 30862777 DOI: 10.1038/s41467-019-08927-2  0.01
2019 El Omari K, Li S, Kotecha A, Walter TS, Bignon EA, Harlos K, Somerharju P, De Haas F, Clare DK, Molin M, Hurtado F, Li M, Grimes JM, Bamford DH, Tischler ND, et al. The structure of a prokaryotic viral envelope protein expands the landscape of membrane fusion proteins. Nature Communications. 10: 846. PMID 30783086 DOI: 10.1038/s41467-019-08728-7  0.01
2018 Jiang M, Österlund P, Westenius V, Guo D, Poranen MM, Bamford DH, Julkunen I. Efficient inhibition of avian and seasonal influenza A viruses by a virus-specific Dicer-substrate siRNA swarm in human monocyte-derived macrophages and dendritic cells. Journal of Virology. PMID 30463970 DOI: 10.1128/JVI.01916-18  1
2018 Lampi M, Oksanen HM, Meier F, Moldenhauer E, Poranen MM, Bamford DH, Eskelin K. Asymmetrical flow field-flow fractionation in purification of an enveloped bacteriophage ϕ6. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1095: 251-257. PMID 30098552 DOI: 10.1016/j.jchromb.2018.07.008  1
2018 Leigh BA, Breitbart M, Oksanen HM, Bamford DH, Dishaw LJ. Genome Sequence of PM2-Like Phage Cr39582, Induced from a Pseudoalteromonas sp. Isolated from the Gut of Ciona robusta. Genome Announcements. 6. PMID 29798916 DOI: 10.1128/Genomea.00368-18  0.01
2018 Atanasova NS, Demina TA, Krishnam Rajan Shanthi SNV, Oksanen HM, Bamford DH. Extremely halophilic pleomorphic archaeal virus HRPV9 extends the diversity of pleolipoviruses with integrases. Research in Microbiology. PMID 29772256 DOI: 10.1016/j.resmic.2018.04.004  0.01
2018 Azinas S, Bano F, Torca I, Bamford DH, Schwartz GA, Esnaola J, Oksanen HM, Richter RP, Abrescia NG. Membrane-containing virus particles exhibit the mechanics of a composite material for genome protection. Nanoscale. PMID 29658555 DOI: 10.1039/c8nr00196k  0.01
2018 Atanasova NS, Heiniö CH, Demina TA, Bamford DH, Oksanen HM. The Unexplored Diversity of Pleolipoviruses: The Surprising Case of Two Viruses with Identical Major Structural Modules. Genes. 9. PMID 29495629 DOI: 10.3390/genes9030131  0.01
2018 Duyvesteyn HME, Ginn HM, Pietilä MK, Wagner A, Hattne J, Grimes JM, Hirvonen E, Evans G, Parsy ML, Sauter NK, Brewster AS, Huiskonen JT, Stuart DI, Sutton G, Bamford DH. Towards in cellulo virus crystallography. Scientific Reports. 8: 3771. PMID 29491457 DOI: 10.1038/S41598-018-21693-3  0.01
2018 Luhtanen AM, Eronen-Rasimus E, Oksanen HM, Tison JL, Delille B, Dieckmann GS, Rintala JM, Bamford DH. The first known virus isolates from Antarctic sea ice have complex infection patterns. Fems Microbiology Ecology. 94. PMID 29481638 DOI: 10.1093/femsec/fiy028  0.01
2017 Bamford DH, Pietilä MK, Roine E, Atanasova NS, Dienstbier A, Oksanen HM, Ictv Report Consortium. ICTV Virus Taxonomy Profile: Pleolipoviridae. The Journal of General Virology. PMID 29125455 DOI: 10.1099/jgv.0.000972  0.01
2017 Prangishvili D, Bamford DH, Forterre P, Iranzo J, Koonin EV, Krupovic M. The enigmatic archaeal virosphere. Nature Reviews. Microbiology. 15: 724-739. PMID 29123227 DOI: 10.1038/nrmicro.2017.125  0.01
2017 Eskelin K, Lampi M, Meier F, Moldenhauer E, Bamford DH, Oksanen HM. Halophilic viruses with varying biochemical and biophysical properties are amenable to purification with asymmetrical flow field-flow fractionation. Extremophiles : Life Under Extreme Conditions. PMID 29019077 DOI: 10.1007/s00792-017-0963-x  0.01
2017 Paavilainen H, Lehtinen J, Romanovskaya A, Nygårdas M, Bamford DH, Poranen MM, Hukkanen V. Topical treatment of herpes simplex virus infection with enzymatically created siRNA swarm. Antiviral Therapy. PMID 28287396 DOI: 10.3851/IMP3153  1
2017 Demina TA, Pietilä MK, Svirskaitė J, Ravantti JJ, Atanasova NS, Bamford DH, Oksanen HM. HCIV-1 and Other Tailless Icosahedral Internal Membrane-Containing Viruses of the Family Sphaerolipoviridae. Viruses. 9. PMID 28218714 DOI: 10.3390/v9020032  0.01
2017 Sinclair RM, Ravantti JJ, Bamford DH. Nucleic and amino acid sequences support structure-based viral classification. Journal of Virology. PMID 28122979 DOI: 10.1128/JVI.02275-16  0.04
2016 Santos-Pérez I, Oksanen HM, Bamford DH, Goñi FM, Reguera D, Abrescia NG. Membrane-assisted viral DNA ejection. Biochimica Et Biophysica Acta. PMID 27993658 DOI: 10.1016/J.Bbagen.2016.12.013  0.01
2016 Gaelings L, Söderholm S, Bugai A, Fu Y, Nandania J, Schepens B, Lorey MB, Tynell J, Vande Ginste L, Le Goffic R, Miller MS, Kuisma M, Marjomäki V, De Brabander J, Matikainen S, ... ... Bamford D, et al. Regulation of Kynurenine Biosynthesis during Influenza Virus Infection. The Febs Journal. PMID 27860276 DOI: 10.1111/febs.13966  0.01
2016 Hanhijärvi KJ, Ziedaite G, Bamford DH, Hæggström E, Poranen MM. Single-molecule measurements of viral ssRNA packaging. Rna (New York, N.Y.). PMID 27803153 DOI: 10.1261/rna.057471.116  1
2016 Eskelin K, Lampi M, Meier F, Moldenhauer E, Bamford DH, Oksanen HM. Asymmetric flow field flow fractionation methods for virus purification. Journal of Chromatography. A. PMID 27697294 DOI: 10.1016/j.chroma.2016.09.055  0.01
2016 Demina TA, Atanasova NS, Pietilä MK, Oksanen HM, Bamford DH. Vesicle-like virion of Haloarcula hispanica pleomorphic virus 3 preserves high infectivity in saturated salt. Virology. 499: 40-51. PMID 27632564 DOI: 10.1016/j.virol.2016.09.002  0.01
2016 Demina TA, Pietilä MK, Svirskaitė J, Ravantti JJ, Atanasova NS, Bamford DH, Oksanen HM. Archaeal Haloarcula californiae Icosahedral Virus 1 Highlights Conserved Elements in Icosahedral Membrane-Containing DNA Viruses from Extreme Environments. Mbio. 7. PMID 27435460 DOI: 10.1128/mBio.00699-16  0.01
2016 Paavilainen H, Lehtinen J, Romanovskaya A, Nygårdas M, Bamford DH, Poranen MM, Hukkanen V. Inhibition of clinical pathogenic herpes simplex virus 1 strains with enzymatically created siRNA pools. Journal of Medical Virology. PMID 27191509 DOI: 10.1002/jmv.24578  1
2016 Atanasova NS, Bamford DH, Oksanen HM. Virus-host interplay in high salt environments. Environmental Microbiology Reports. 8: 431-44. PMID 26929102 DOI: 10.1111/1758-2229.12385  0.01
2016 Svirskaitė J, Oksanen HM, Daugelavičius R, Bamford DH. Monitoring Physiological Changes in Haloarchaeal Cell during Virus Release. Viruses. 8: 59. PMID 26927156 DOI: 10.3390/v8030059  0.01
2016 Orentaite I, Poranen MM, Oksanen HM, Daugelavicius R, Bamford DH. K2 killer toxin-induced physiological changes in the yeast Saccharomyces cerevisiae. Fems Yeast Research. 16: fow003. PMID 26818855 DOI: 10.1093/femsyr/fow003  1
2016 Jaakkola ST, Ravantti JJ, Oksanen HM, Bamford DH. Buried Alive: Microbes from Ancient Halite. Trends in Microbiology. 24: 148-60. PMID 26796472 DOI: 10.1016/j.tim.2015.12.002  0.01
2016 Söderholm S, Anastasina M, Islam MM, Tynell J, Poranen MM, Bamford DH, Stenman J, Julkunen I, Šaulienė I, De Brabander JK, Matikainen S, Nyman TA, Saelens X, Kainov D. Immuno-modulating properties of saliphenylhalamide, SNS-032, obatoclax, and gemcitabine. Antiviral Research. 126: 69-80. PMID 26738783 DOI: 10.1016/j.antiviral.2015.12.011  1
2016 Pietilä MK, Roine E, Sencilo A, Bamford DH, Oksanen HM. Pleolipoviridae, a newly proposed family comprising archaeal pleomorphic viruses with single-stranded or double-stranded DNA genomes. Archives of Virology. 161: 249-56. PMID 26459284 DOI: 10.1007/s00705-015-2613-x  0.01
2016 Söderholm S, Anastasina M, Islam MM, Tynell J, Poranen MM, Bamford DH, Stenman J, Julkunen I, Šauliene I, De Brabander JK, Matikainen S, Nyman TA, Saelens X, Kainov D. Immuno-modulating properties of saliphenylhalamide, SNS-032, obatoclax, and gemcitabine Antiviral Research. 126: 69-80. DOI: 10.1016/j.antiviral.2015.12.011  1
2015 Jaakkola ST, Pfeiffer F, Ravantti JJ, Guo Q, Liu Y, Chen X, Ma H, Yang C, Oksanen HM, Bamford DH. The complete genome of a viable archaeum isolated from 123 million years old rock salt. Environmental Microbiology. PMID 26628271 DOI: 10.1111/1462-2920.13130  1
2015 Quemin ER, Pietilä MK, Oksanen HM, Forterre P, Rijpstra WI, Schouten S, Bamford DH, Prangishvili D, Krupovic M. Sulfolobus Spindle-Shaped Virus 1 Contains Glycosylated Capsid Proteins, a Cellular Chromatin Protein, and Host-Derived Lipids. Journal of Virology. 89: 11681-91. PMID 26355093 DOI: 10.1128/JVI.02270-15  0.01
2015 Liu Y, Wang J, Liu Y, Wang Y, Zhang Z, Oksanen HM, Bamford DH, Chen X. Identification and characterization of SNJ2, the first temperate pleolipovirus integrating into the genome of the SNJ1-lysogenic archaeal strain. Molecular Microbiology. PMID 26331239 DOI: 10.1111/mmi.13204  0.01
2015 Gil-Carton D, Jaakkola ST, Charro D, Peralta B, Castaño-Díez D, Oksanen HM, Bamford DH, Abrescia NG. Insight into the Assembly of Viruses with Vertical Single β-barrel Major Capsid Proteins. Structure (London, England : 1993). 23: 1866-77. PMID 26320579 DOI: 10.1016/j.str.2015.07.015  0.01
2015 Atanasova NS, Bamford DH, Oksanen HM. Haloarchaeal virus morphotypes. Biochimie. 118: 333-43. PMID 26151345 DOI: 10.1016/j.biochi.2015.07.002  0.01
2015 Atanasova NS, Oksanen HM, Bamford DH. Haloviruses of archaea, bacteria, and eukaryotes. Current Opinion in Microbiology. 25: 40-8. PMID 25932531 DOI: 10.1016/j.mib.2015.04.001  0.01
2015 Adams MJ, Lefkowitz EJ, King AM, Bamford DH, Breitbart M, Davison AJ, Ghabrial SA, Gorbalenya AE, Knowles NJ, Krell P, Lavigne R, Prangishvili D, Sanfaçon H, Siddell SG, Simmonds P, et al. Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2015). Archives of Virology. 160: 1837-50. PMID 25913692 DOI: 10.1007/s00705-015-2425-z  1
2015 Atanasova NS, Demina TA, Buivydas A, Bamford DH, Oksanen HM. Archaeal viruses multiply: temporal screening in a solar saltern. Viruses. 7: 1902-26. PMID 25866903 DOI: 10.3390/v7041902  0.01
2015 Atanasova NS, Senčilo A, Pietilä MK, Roine E, Oksanen HM, Bamford DH. Comparison of lipid-containing bacterial and archaeal viruses. Advances in Virus Research. 92: 1-61. PMID 25701885 DOI: 10.1016/bs.aivir.2014.11.005  0.01
2015 Dulin D, Vilfan ID, Berghuis BA, Hage S, Bamford DH, Poranen MM, Depken M, Dekker NH. Elongation-Competent Pauses Govern the Fidelity of a Viral RNA-Dependent RNA Polymerase. Cell Reports. PMID 25683720 DOI: 10.1016/J.Celrep.2015.01.031  1
2015 Hong C, Pietilä MK, Fu CJ, Schmid MF, Bamford DH, Chiu W. Lemon-shaped halo archaeal virus His1 with uniform tail but variable capsid structure. Proceedings of the National Academy of Sciences of the United States of America. 112: 2449-54. PMID 25675521 DOI: 10.1073/Pnas.1425008112  1
2015 Jiang M, Österlund P, Fagerlund R, Rios DN, Hoffmann A, Poranen MM, Bamford DH, Julkunen I. MAP kinase p38α regulates type III interferon (IFN-λ1) gene expression in human monocyte-derived dendritic cells in response to RNA stimulation. Journal of Leukocyte Biology. 97: 307-20. PMID 25473098 DOI: 10.1189/Jlb.2A0114-059Rr  1
2015 Voloudakis AE, Holeva MC, Sarin LP, Bamford DH, Vargas M, Poranen MM, Tenllado F. Efficient double-stranded RNA production methods for utilization in plant virus control. Methods in Molecular Biology (Clifton, N.J.). 1236: 255-74. PMID 25287509 DOI: 10.1007/978-1-4939-1743-3_19  1
2015 Senčilo A, Luhtanen AM, Saarijärvi M, Bamford DH, Roine E. Cold-active bacteriophages from the Baltic Sea ice have diverse genomes and virus-host interactions. Environmental Microbiology. 17: 3628-41. PMID 25156651 DOI: 10.1111/1462-2920.12611  0.01
2015 Paavilainen H, Romanovskaya A, Nygårdas M, Bamford DH, Poranen MM, Hukkanen V. Innate responses to small interfering RNA pools inhibiting herpes simplex virus infection in astrocytoid and epithelial cells. Innate Immunity. 21: 349-57. PMID 24996409 DOI: 10.1177/1753425914537921  1
2014 Hong C, Oksanen HM, Liu X, Jakana J, Bamford DH, Chiu W. A structural model of the genome packaging process in a membrane-containing double stranded DNA virus. Plos Biology. 12: e1002024. PMID 25514469 DOI: 10.1371/Journal.Pbio.1002024  0.01
2014 Jaakkola ST, Zerulla K, Guo Q, Liu Y, Ma H, Yang C, Bamford DH, Chen X, Soppa J, Oksanen HM. Halophilic archaea cultivated from surface sterilized middle-late eocene rock salt are polyploid. Plos One. 9: e110533. PMID 25338080 DOI: 10.1371/journal.pone.0110533  0.01
2014 Krupovic M, Bamford DH, Koonin EV. Conservation of major and minor jelly-roll capsid proteins in Polinton (Maverick) transposons suggests that they are bona fide viruses. Biology Direct. 9: 6. PMID 24773695 DOI: 10.1186/1745-6150-9-6  0.01
2014 Sun X, Bamford DH, Poranen MM. Electrostatic interactions drive the self-assembly and the transcription activity of the Pseudomonas phage ϕ6 procapsid. Journal of Virology. 88: 7112-6. PMID 24719418 DOI: 10.1128/JVI.00467-14  1
2014 Pietilä MK, Demina TA, Atanasova NS, Oksanen HM, Bamford DH. Archaeal viruses and bacteriophages: comparisons and contrasts. Trends in Microbiology. 22: 334-44. PMID 24647075 DOI: 10.1016/j.tim.2014.02.007  0.01
2014 Ojala H, Ziedaite G, Wallin AE, Bamford DH, Hæggström E. Optical tweezers reveal force plateau and internal friction in PEG-induced DNA condensation. European Biophysics Journal : Ebj. 43: 71-9. PMID 24477280 DOI: 10.1007/s00249-013-0941-x  1
2014 Krupovic M, Quemin ER, Bamford DH, Forterre P, Prangishvili D. Unification of the globally distributed spindle-shaped viruses of the Archaea. Journal of Virology. 88: 2354-8. PMID 24335300 DOI: 10.1128/JVI.02941-13  0.01
2013 Sun X, Pirttimaa MJ, Bamford DH, Poranen MM. Rescue of maturation off-pathway products in the assembly of Pseudomonas phage φ 6. Journal of Virology. 87: 13279-86. PMID 24089550 DOI: 10.1128/JVI.02285-13  1
2013 Peralta B, Gil-Carton D, Castaño-Díez D, Bertin A, Boulogne C, Oksanen HM, Bamford DH, Abrescia NG. Mechanism of membranous tunnelling nanotube formation in viral genome delivery. Plos Biology. 11: e1001667. PMID 24086111 DOI: 10.1371/journal.pbio.1001667  0.01
2013 El Omari K, Meier C, Kainov D, Sutton G, Grimes JM, Poranen MM, Bamford DH, Tuma R, Stuart DI, Mancini EJ. Tracking in atomic detail the functional specializations in viral RecA helicases that occur during evolution. Nucleic Acids Research. 41: 9396-410. PMID 23939620 DOI: 10.1093/nar/gkt713  1
2013 El Omari K, Sutton G, Ravantti JJ, Zhang H, Walter TS, Grimes JM, Bamford DH, Stuart DI, Mancini EJ. Plate tectonics of virus shell assembly and reorganization in phage φ8, a distant relative of mammalian reoviruses. Structure (London, England : 1993). 21: 1384-95. PMID 23891291 DOI: 10.1016/j.str.2013.06.017  1
2013 Pietilä MK, Laurinmäki P, Russell DA, Ko CC, Jacobs-Sera D, Hendrix RW, Bamford DH, Butcher SJ. Structure of the archaeal head-tailed virus HSTV-1 completes the HK97 fold story. Proceedings of the National Academy of Sciences of the United States of America. 110: 10604-9. PMID 23733949 DOI: 10.1073/Pnas.1303047110  1
2013 Buivydas A, Pasanen T, Senčilo A, Daugelavičius R, Vaara M, Bamford DH. Clinical isolates of Pseudomonas aeruginosa from superficial skin infections have different physiological patterns. Fems Microbiology Letters. 343: 183-9. PMID 23590530 DOI: 10.1111/1574-6968.12148  0.01
2013 Senčilo A, Jacobs-Sera D, Russell DA, Ko CC, Bowman CA, Atanasova NS, Österlund E, Oksanen HM, Bamford DH, Hatfull GF, Roine E, Hendrix RW. Snapshot of haloarchaeal tailed virus genomes. Rna Biology. 10: 803-16. PMID 23470522 DOI: 10.4161/Rna.24045  1
2013 Vitale R, Roine E, Bamford DH, Corcelli A. Lipid fingerprints of intact viruses by MALDI-TOF/mass spectrometry Biochimica Et Biophysica Acta - Molecular and Cell Biology of Lipids. 1831: 872-879. PMID 23354175 DOI: 10.1016/j.bbalip.2013.01.011  1
2013 Romanovskaya A, Sarin LP, Bamford DH, Poranen MM. High-throughput purification of double-stranded RNA molecules using convective interaction media monolithic anion exchange columns. Journal of Chromatography. A. 1278: 54-60. PMID 23332782 DOI: 10.1016/j.chroma.2012.12.050  1
2013 Pietilä MK, Laurinmäki P, Russell DA, Ko CC, Jacobs-Sera D, Butcher SJ, Bamford DH, Hendrix RW. Insights into head-tailed viruses infecting extremely halophilic archaea. Journal of Virology. 87: 3248-60. PMID 23283946 DOI: 10.1128/Jvi.03397-12  1
2013 Bahar MW, Sarin LP, Graham SC, Pang J, Bamford DH, Stuart DI, Grimes JM. Structure of a VP1-VP3 complex suggests how birnaviruses package the VP1 polymerase. Journal of Virology. 87: 3229-36. PMID 23283942 DOI: 10.1128/JVI.02939-12  1
2013 Pietilä MK, Atanasova NS, Oksanen HM, Bamford DH. Modified coat protein forms the flexible spindle-shaped virion of haloarchaeal virus His1. Environmental Microbiology. 15: 1674-86. PMID 23163639 DOI: 10.1111/1462-2920.12030  0.01
2012 Romanovskaya A, Paavilainen H, Nygårdas M, Bamford DH, Hukkanen V, Poranen MM. Enzymatically produced pools of canonical and Dicer-substrate siRNA molecules display comparable gene silencing and antiviral activities against herpes simplex virus. Plos One. 7: e51019. PMID 23226452 DOI: 10.1371/journal.pone.0051019  1
2012 Oksanen HM, Domanska A, Bamford DH. Monolithic ion exchange chromatographic methods for virus purification. Virology. 434: 271-7. PMID 23089255 DOI: 10.1016/j.virol.2012.09.019  0.01
2012 Roine E, Bamford DH. Lipids of archaeal viruses. Archaea (Vancouver, B.C.). 2012: 384919. PMID 23049284 DOI: 10.1155/2012/384919  0.01
2012 Sun X, Bamford DH, Poranen MM. Probing, by self-assembly, the number of potential binding sites for minor protein subunits in the procapsid of double-stranded RNA bacteriophage Φ6. Journal of Virology. 86: 12208-16. PMID 22933292 DOI: 10.1128/JVI.01505-12  1
2012 Zhang Z, Liu Y, Wang S, Yang D, Cheng Y, Hu J, Chen J, Mei Y, Shen P, Bamford DH, Chen X. Temperate membrane-containing halophilic archaeal virus SNJ1 has a circular dsDNA genome identical to that of plasmid pHH205. Virology. 434: 233-41. PMID 22784791 DOI: 10.1016/J.Virol.2012.05.036  0.01
2012 Sarin LP, Wright S, Chen Q, Degerth LH, Stuart DI, Grimes JM, Bamford DH, Poranen MM. The C-terminal priming domain is strongly associated with the main body of bacteriophage ϕ6 RNA-dependent RNA polymerase. Virology. 432: 184-93. PMID 22770923 DOI: 10.1016/j.virol.2012.05.035  1
2012 Aalto AP, Bitto D, Ravantti JJ, Bamford DH, Huiskonen JT, Oksanen HM. Snapshot of virus evolution in hypersaline environments from the characterization of a membrane-containing Salisaeta icosahedral phage 1. Proceedings of the National Academy of Sciences of the United States of America. 109: 7079-84. PMID 22509017 DOI: 10.1073/pnas.1120174109  0.01
2012 Abrescia NG, Bamford DH, Grimes JM, Stuart DI. Structure unifies the viral universe. Annual Review of Biochemistry. 81: 795-822. PMID 22482909 DOI: 10.1146/annurev-biochem-060910-095130  1
2012 Kandiba L, Aitio O, Helin J, Guan Z, Permi P, Bamford DH, Eichler J, Roine E. Diversity in prokaryotic glycosylation: an archaeal-derived N-linked glycan contains legionaminic acid. Molecular Microbiology. 84: 578-93. PMID 22435790 DOI: 10.1111/J.1365-2958.2012.08045.X  0.01
2012 Sarin LP, Hirvonen JJ, Laurinmäki P, Butcher SJ, Bamford DH, Poranen MM. Bacteriophage Ï•6 nucleocapsid surface protein 8 interacts with virus-specific membrane vesicles containing major envelope protein 9. Journal of Virology. 86: 5376-9. PMID 22379079 DOI: 10.1128/JVI.00172-12  1
2012 Jaakkola ST, Penttinen RK, Vilén ST, Jalasvuori M, Rönnholm G, Bamford JK, Bamford DH, Oksanen HM. Closely related archaeal Haloarcula hispanica icosahedral viruses HHIV-2 and SH1 have nonhomologous genes encoding host recognition functions. Journal of Virology. 86: 4734-42. PMID 22357274 DOI: 10.1128/JVI.06666-11  0.01
2012 Poranen MM, Bamford DH. Assembly of large icosahedral double-stranded RNA viruses. Advances in Experimental Medicine and Biology. 726: 379-402. PMID 22297523 DOI: 10.1007/978-1-4614-0980-9_17  1
2012 Wright S, Poranen MM, Bamford DH, Stuart DI, Grimes JM. Noncatalytic ions direct the RNA-dependent RNA polymerase of bacterial double-stranded RNA virus ϕ6 from de novo initiation to elongation. Journal of Virology. 86: 2837-49. PMID 22205747 DOI: 10.1128/JVI.05168-11  1
2012 Atanasova NS, Roine E, Oren A, Bamford DH, Oksanen HM. Global network of specific virus-host interactions in hypersaline environments. Environmental Microbiology. 14: 426-40. PMID 22003883 DOI: 10.1111/j.1462-2920.2011.02603.x  0.01
2012 Jaatinen ST, Happonen LJ, Laurinmäki P, Butcher SJ, Bamford DH. Corrigendum to "Biochemical and structural characterisation of membrane-containing icosahedral dsDNA bacteriophages infecting thermophilic Thermus thermophilus" [Virology 379(1) (2008) 10-19] Virology. 427: 224. DOI: 10.1016/j.virol.2012.02.011  1
2011 Krupovic M, Bamford DH. Double-stranded DNA viruses: 20 families and only five different architectural principles for virion assembly. Current Opinion in Virology. 1: 118-24. PMID 22440622 DOI: 10.1016/j.coviro.2011.06.001  0.01
2011 Krupovic M, Prangishvili D, Hendrix RW, Bamford DH. Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere. Microbiology and Molecular Biology Reviews : Mmbr. 75: 610-35. PMID 22126996 DOI: 10.1128/Mmbr.00011-11  1
2011 Jiang M, Osterlund P, Sarin LP, Poranen MM, Bamford DH, Guo D, Julkunen I. Innate immune responses in human monocyte-derived dendritic cells are highly dependent on the size and the 5' phosphorylation of RNA molecules. Journal of Immunology (Baltimore, Md. : 1950). 187: 1713-21. PMID 21742966 DOI: 10.4049/jimmunol.1100361  1
2011 Graham SC, Sarin LP, Bahar MW, Myers RA, Stuart DI, Bamford DH, Grimes JM. The N-terminus of the RNA polymerase from infectious pancreatic necrosis virus is the determinant of genome attachment. Plos Pathogens. 7: e1002085. PMID 21731487 DOI: 10.1371/journal.ppat.1002085  1
2011 Krupovic M, Bamford DH. Virology. Revealing virus-host interplay. Science (New York, N.Y.). 333: 45-6. PMID 21719664 DOI: 10.1126/science.1208557  0.01
2011 Abrescia NG, Grimes JM, Oksanen HM, Bamford JK, Bamford DH, Stuart DI. The use of low-resolution phasing followed by phase extension from 7.6 to 2.5 Å resolution with noncrystallographic symmetry to solve the structure of a bacteriophage capsid protein. Acta Crystallographica. Section D, Biological Crystallography. 67: 228-32. PMID 21358054 DOI: 10.1107/S0907444911002277  1
2010 Lee HC, Aalto AP, Yang Q, Chang SS, Huang G, Fisher D, Cha J, Poranen MM, Bamford DH, Liu Y. The DNA/RNA-dependent RNA polymerase QDE-1 generates aberrant RNA and dsRNA for RNAi in a process requiring replication protein A and a DNA helicase. Plos Biology. 8. PMID 20957187 DOI: 10.1371/journal.pbio.1000496  1
2010 Krupovič M, Bamford DH. Order to the viral universe. Journal of Virology. 84: 12476-9. PMID 20926569 DOI: 10.1128/JVI.01489-10  0.01
2010 Aalto AP, Poranen MM, Grimes JM, Stuart DI, Bamford DH. In vitro activities of the multifunctional RNA silencing polymerase QDE-1 of Neurospora crassa. The Journal of Biological Chemistry. 285: 29367-74. PMID 20647305 DOI: 10.1074/jbc.M110.139121  1
2010 Cvirkaite-Krupovic V, Krupovic M, Daugelavicius R, Bamford DH. Calcium ion-dependent entry of the membrane-containing bacteriophage PM2 into its Pseudoalteromonas host. Virology. 405: 120-8. PMID 20646729 DOI: 10.1016/j.virol.2010.05.021  0.01
2010 Krupovic M, Gribaldo S, Bamford DH, Forterre P. The evolutionary history of archaeal MCM helicases: a case study of vertical evolution combined with hitchhiking of mobile genetic elements. Molecular Biology and Evolution. 27: 2716-32. PMID 20581330 DOI: 10.1093/molbev/msq161  0.01
2010 Daugelavicius R, Buivydas A, Sencilo A, Bamford DH. Assessment of the activity of RND-type multidrug efflux pumps in Pseudomonas aeruginosa using tetraphenylphosphonium ions. International Journal of Antimicrobial Agents. 36: 234-8. PMID 20488669 DOI: 10.1016/j.ijantimicag.2010.03.028  0.01
2010 Cvirkaite-Krupovic V, Poranen MM, Bamford DH. Phospholipids act as secondary receptor during the entry of the enveloped, double-stranded RNA bacteriophage phi6. The Journal of General Virology. 91: 2116-20. PMID 20427561 DOI: 10.1099/vir.0.020305-0  1
2010 Krupovic M, Cvirkaite-Krupovic V, Bamford DH. Protein A33 responsible for antibody-resistant spread of Vaccinia virus is homologous to C-type lectin-like proteins. Virus Research. 151: 97-101. PMID 20302896 DOI: 10.1016/j.virusres.2010.03.004  0.01
2010 Krupovic M, Forterre P, Bamford DH. Comparative analysis of the mosaic genomes of tailed archaeal viruses and proviruses suggests common themes for virion architecture and assembly with tailed viruses of bacteria. Journal of Molecular Biology. 397: 144-60. PMID 20109464 DOI: 10.1016/j.jmb.2010.01.037  0.01
2010 Roine E, Kukkaro P, Paulin L, Laurinavicius S, Domanska A, Somerharju P, Bamford DH. New, closely related haloarchaeal viral elements with different nucleic Acid types. Journal of Virology. 84: 3682-9. PMID 20089654 DOI: 10.1128/JVI.01879-09  0.01
2010 Pietilä MK, Laurinavicius S, Sund J, Roine E, Bamford DH. The single-stranded DNA genome of novel archaeal virus halorubrum pleomorphic virus 1 is enclosed in the envelope decorated with glycoprotein spikes. Journal of Virology. 84: 788-98. PMID 19864380 DOI: 10.1128/JVI.01347-09  0.01
2009 Kukkaro P, Bamford DH. Virus-host interactions in environments with a wide range of ionic strengths. Environmental Microbiology Reports. 1: 71-7. PMID 23765723 DOI: 10.1111/j.1758-2229.2008.00007.x  0.01
2009 Jalasvuori M, Jaatinen ST, Laurinavicius S, Ahola-Iivarinen E, Kalkkinen N, Bamford DH, Bamford JK. The closest relatives of icosahedral viruses of thermophilic bacteria are among viruses and plasmids of the halophilic archaea. Journal of Virology. 83: 9388-97. PMID 19587059 DOI: 10.1128/JVI.00869-09  0.01
2009 Nygårdas M, Vuorinen T, Aalto AP, Bamford DH, Hukkanen V. Inhibition of coxsackievirus B3 and related enteroviruses by antiviral short interfering RNA pools produced using phi6 RNA-dependent RNA polymerase. The Journal of General Virology. 90: 2468-73. PMID 19553393 DOI: 10.1099/vir.0.011338-0  0.01
2009 Krupovic M, Ravantti JJ, Bamford DH. Geminiviruses: a tale of a plasmid becoming a virus. Bmc Evolutionary Biology. 9: 112. PMID 19460138 DOI: 10.1186/1471-2148-9-112  0.04
2009 Lee HC, Chang SS, Choudhary S, Aalto AP, Maiti M, Bamford DH, Liu Y. qiRNA is a new type of small interfering RNA induced by DNA damage. Nature. 459: 274-7. PMID 19444217 DOI: 10.1038/nature08041  0.01
2009 Pietilä MK, Roine E, Paulin L, Kalkkinen N, Bamford DH. An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope. Molecular Microbiology. 72: 307-19. PMID 19298373 DOI: 10.1111/j.1365-2958.2009.06642.x  0.01
2009 Krupovic M, Bamford DH. Does the evolution of viral polymerases reflect the origin and evolution of viruses? Nature Reviews. Microbiology. 7: 250; author reply 25. PMID 19198619 DOI: 10.1038/nrmicro2030-c1  0.01
2009 Ziedaite G, Kivelä HM, Bamford JK, Bamford DH. Purified membrane-containing procapsids of bacteriophage PRD1 package the viral genome. Journal of Molecular Biology. 386: 637-47. PMID 19150363 DOI: 10.1016/j.jmb.2008.12.068  0.01
2009 Sarin LP, Poranen MM, Lehti NM, Ravantti JJ, Koivunen MRL, Aalto AP, Van dijk AA, Stuart DI, Grimes JM, Bamford DH. Insights into the pre-initiation events of bacteriophage φ6 RNA-dependent RNA polymerase: Towards the assembly of a productive binary complex Nucleic Acids Research. 37: 1182-1192. PMID 19129226 DOI: 10.1093/nar/gkn1035  1
2009 Wallin AE, Ojala H, Ziedaite G, Degerth L, Bamford D, Haeggström E. High-resolution optical tweezers for investigating DNA-binding/translocating molecular motors Proceedings of Spie. 7400: 740007. DOI: 10.1117/12.826470  0.01
2008 Krupovic M, Bamford DH. Virus evolution: how far does the double beta-barrel viral lineage extend? Nature Reviews. Microbiology. 6: 941-8. PMID 19008892 DOI: 10.1038/nrmicro2033  0.01
2008 Vilfan ID, Candelli A, Hage S, Aalto AP, Poranen MM, Bamford DH, Dekker NH. Reinitiated viral RNA-dependent RNA polymerase resumes replication at a reduced rate. Nucleic Acids Research. 36: 7059-67. PMID 18986997 DOI: 10.1093/Nar/Gkn836  1
2008 Poranen MM, Salgado PS, Koivunen MRI, Wright S, Bamford DH, Stuart DI, Grimes JM. Structural explanation for the role of Mn2+ in the activity of φ6 RNA-dependent RNA polymerase Nucleic Acids Research. 36: 6633-6644. PMID 18940872 DOI: 10.1093/nar/gkn632  1
2008 Poranen MM, Butcher SJ, Simonov VM, Laurinmäki P, Bamford DH. Roles of the minor capsid protein P7 in the assembly and replication of double-stranded RNA bacteriophage phi6. Journal of Molecular Biology. 383: 529-38. PMID 18793644 DOI: 10.1016/j.jmb.2008.08.082  1
2008 Abrescia NG, Grimes JM, Kivelä HM, Assenberg R, Sutton GC, Butcher SJ, Bamford JK, Bamford DH, Stuart DI. Insights into virus evolution and membrane biogenesis from the structure of the marine lipid-containing bacteriophage PM2. Molecular Cell. 31: 749-61. PMID 18775333 DOI: 10.1016/j.molcel.2008.06.026  1
2008 Jaatinen ST, Happonen LJ, Laurinmäki P, Butcher SJ, Bamford DH. Biochemical and structural characterisation of membrane-containing icosahedral dsDNA bacteriophages infecting thermophilic Thermus thermophilus. Virology. 379: 10-9. PMID 18657283 DOI: 10.1016/j.virol.2008.06.023  1
2008 Poranen MM, Koivunen MR, Bamford DH. Nontemplated terminal nucleotidyltransferase activity of double-stranded RNA bacteriophage phi6 RNA-dependent RNA polymerase. Journal of Virology. 82: 9254-64. PMID 18614640 DOI: 10.1128/JVI.01044-08  1
2008 Krupovic M, Bamford DH. Holin of bacteriophage lambda: structural insights into a membrane lesion. Molecular Microbiology. 69: 781-3. PMID 18573181 DOI: 10.1111/j.1365-2958.2008.06335.x  0.01
2008 Jäälinoja HT, Roine E, Laurinmäki P, Kivelä HM, Bamford DH, Butcher SJ. Structure and host-cell interaction of SH1, a membrane-containing, halophilic euryarchaeal virus. Proceedings of the National Academy of Sciences of the United States of America. 105: 8008-13. PMID 18515426 DOI: 10.1073/pnas.0801758105  0.01
2008 Krupovic M, Cvirkaite-Krupovic V, Bamford DH. Identification and functional analysis of the Rz/Rz1-like accessory lysis genes in the membrane-containing bacteriophage PRD1. Molecular Microbiology. 68: 492-503. PMID 18366440 DOI: 10.1111/j.1365-2958.2008.06165.x  0.01
2008 Krupovic M, Bamford DH. Archaeal proviruses TKV4 and MVV extend the PRD1-adenovirus lineage to the phylum Euryarchaeota. Virology. 375: 292-300. PMID 18308362 DOI: 10.1016/j.virol.2008.01.043  0.01
2008 Kivelä HM, Abrescia NGA, Bamford JKH, Grimes JM, Stuart DI, Bamford DH. Selenomethionine labeling of large biological macromolecular complexes: Probing the structure of marine bacterial virus PM2 Journal of Structural Biology. 161: 204-210. PMID 18082422 DOI: 10.1016/j.jsb.2007.10.013  1
2008 Ravantti JJ, Ruokoranta TM, Alapuranen AM, Bamford DH. Global transcriptional responses of Pseudomonas aeruginosa to phage PRR1 infection. Journal of Virology. 82: 2324-9. PMID 18077716 DOI: 10.1128/JVI.01930-07  0.01
2008 Kainov DE, Mancini EJ, Telenius J, Lísal J, Grimes JM, Bamford DH, Stuart DI, Tuma R. Structural basis of mechanochemical coupling in a hexameric molecular motor Journal of Biological Chemistry. 283: 3607-3617. PMID 18057007 DOI: 10.1074/jbc.M706366200  1
2007 Gaidelyte A, Vaara M, Bamford DH. Bacteria, phages and septicemia. Plos One. 2: e1145. PMID 18188406 DOI: 10.1371/journal.pone.0001145  0.01
2007 Krupovic M, Daugelavicius R, Bamford DH. Polymyxin B induces lysis of marine pseudoalteromonads. Antimicrobial Agents and Chemotherapy. 51: 3908-14. PMID 17709471 DOI: 10.1128/AAC.00449-07  0.01
2007 Laurinavicius S, Bamford DH, Somerharju P. Transbilayer distribution of phospholipids in bacteriophage membranes. Biochimica Et Biophysica Acta. 1768: 2568-77. PMID 17658459 DOI: 10.1016/j.bbamem.2007.06.009  0.01
2007 Krupovic M, Bamford DH. Putative prophages related to lytic tailless marine dsDNA phage PM2 are widespread in the genomes of aquatic bacteria. Bmc Genomics. 8: 236. PMID 17634101 DOI: 10.1186/1471-2164-8-236  0.01
2007 Krupovic M, Daugelavicius R, Bamford DH. A novel lysis system in PM2, a lipid-containing marine double-stranded DNA bacteriophage. Molecular Microbiology. 64: 1635-48. PMID 17555443 DOI: 10.1111/j.1365-2958.2007.05769.x  0.01
2007 Aalto AP, Sarin LP, van Dijk AA, Saarma M, Poranen MM, Arumäe U, Bamford DH. Large-scale production of dsRNA and siRNA pools for RNA interference utilizing bacteriophage phi6 RNA-dependent RNA polymerase. Rna (New York, N.Y.). 13: 422-9. PMID 17237359 DOI: 10.1261/rna.348307  1
2006 Salgado PS, Koivunen MRL, Makeyev EV, Bamford DH, Stuart DI, Grimes JM. The structure of an RNAi polymerase links RNA silencing and transcription Plos Biology. 4. PMID 17147473 DOI: 10.1371/journal.pbio.0040434  1
2006 Huiskonen JT, de Haas F, Bubeck D, Bamford DH, Fuller SD, Butcher SJ. Structure of the bacteriophage phi6 nucleocapsid suggests a mechanism for sequential RNA packaging. Structure (London, England : 1993). 14: 1039-48. PMID 16765897 DOI: 10.1016/J.Str.2006.03.018  1
2005 Abrescia NGA, Kivelä HM, Grimes JM, Bamford JKH, Bamford DH, Stuart DI. Preliminary crystallographic analysis of the major capsid protein P2 of the lipid-containing bacteriophage PM2 Acta Crystallographica Section F: Structural Biology and Crystallization Communications. 61: 762-765. PMID 16511151 DOI: 10.1107/S174430910502141X  1
2005 Laurinmäki PA, Huiskonen JT, Bamford DH, Butcher SJ. Membrane proteins modulate the bilayer curvature in the bacterial virus Bam35. Structure (London, England : 1993). 13: 1819-28. PMID 16338410 DOI: 10.1016/j.str.2005.08.020  0.01
2005 Bamford DH, Grimes JM, Stuart DI. What does structure tell us about virus evolution? Current Opinion in Structural Biology. 15: 655-663. PMID 16271469 DOI: 10.1016/j.sbi.2005.10.012  1
2005 Meier C, Mancini EJ, Bamford DH, Walsh MA, Stuart DI, Grimes JM. Overcoming the false-minima problem in direct methods: structure determination of the packaging enzyme P4 from bacteriophage phi13. Acta Crystallographica. Section D, Biological Crystallography. 61: 1238-44. PMID 16131757 DOI: 10.1107/S0907444905019761  1
2005 Saren AM, Ravantti JJ, Benson SD, Burnett RM, Paulin L, Bamford DH, Bamford JK. A snapshot of viral evolution from genome analysis of the tectiviridae family. Journal of Molecular Biology. 350: 427-40. PMID 15946683 DOI: 10.1016/J.Jmb.2005.04.059  1
2005 Merckel MC, Huiskonen JT, Bamford DH, Goldman A, Tuma R. The structure of the bacteriophage PRD1 spike sheds light on the evolution of viral capsid architecture. Molecular Cell. 18: 161-70. PMID 15837420 DOI: 10.1016/J.Molcel.2005.03.019  0.01
2005 Laurila MRL, Salgado PS, Stuart DI, Grimes JM, Bamford DH. Back-priming mode of φ6 RNA-dependent RNA polymerase Journal of General Virology. 86: 521-526. PMID 15659773 DOI: 10.1099/vir.0.80492-0  1
2005 Laurila MRL, Salgado PS, Makeyev EV, Nettelship J, Stuart DI, Grimes JM, Bamford DH. Gene silencing pathway RNA-dependent RNA polymerase of Neurospora crassa: Yeast expression and crystallization of selenomethionated QDE-1 protein Journal of Structural Biology. 149: 111-115. PMID 15629662 DOI: 10.1016/j.jsb.2004.10.001  1
2005 Tuma R, Tsuruta H, Prevelige PE, Kainov DE, Poranen MM, Bamford DH. In vitro assembly of bacteriophages: Folding, kinetic control and intermediates Journal of Theoretical Medicine. 6: 139. DOI: 10.1080/08893110500150073  1
2004 Kainov DE, Simonov V, Bamford DH, Tuma R, Gottlieb P, Wei H, Walsh MA, Belrhali H, Merckel MC. Crystallization and preliminary X-ray diffraction analysis of bacteriophage varphi12 packaging factor P7. Acta Crystallographica. Section D, Biological Crystallography. 60: 2368-70. PMID 15583391 DOI: 10.1107/S0907444904026952  0.01
2004 Benson SD, Bamford JK, Bamford DH, Burnett RM. Does common architecture reveal a viral lineage spanning all three domains of life? Molecular Cell. 16: 673-85. PMID 15574324 DOI: 10.1016/J.Molcel.2004.11.016  1
2004 Cockburn JJB, Abrescia NGA, Grimes JM, Sutton GC, Diprose JM, Benevides JM, Thomas GJ, Bamford JKH, Bamford DH, Stuart DI. Membrane structure and interactions with protein and DNA in bacteriophage PRD1 Nature. 432: 122-125. PMID 15525993 DOI: 10.1038/nature03053  1
2004 Abrescia NG, Cockburn JJ, Grimes JM, Sutton GC, Diprose JM, Butcher SJ, Fuller SD, San Martín C, Burnett RM, Stuart DI, Bamford DH, Bamford JK. Insights into assembly from structural analysis of bacteriophage PRD1. Nature. 432: 68-74. PMID 15525981 DOI: 10.1038/Nature03056  1
2004 Yang H, Makeyev EV, Kang Z, Ji S, Bamford DH, van Dijk AA. Cloning and sequence analysis of dsRNA segments 5, 6 and 7 of a novel non-group A, B, C adult rotavirus that caused an outbreak of gastroenteritis in China. Virus Research. 106: 15-26. PMID 15522443 DOI: 10.1016/j.virusres.2004.05.011  0.08
2004 Mancini EJ, Kainov DE, Grimes JM, Tuma R, Bamford DH, Stuart DI. Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation Cell. 118: 743-755. PMID 15369673 DOI: 10.1016/j.cell.2004.09.007  1
2004 Huiskonen JT, Kivelä HM, Bamford DH, Butcher SJ. The PM2 virion has a novel organization with an internal membrane and pentameric receptor binding spikes. Nature Structural & Molecular Biology. 11: 850-6. PMID 15286721 DOI: 10.1038/nsmb807  0.01
2004 Mancini EJ, Kainov DE, Wei H, Gottlieb P, Tuma R, Bamford DH, Stuart DI, Grimes JM. Production, crystallization and preliminary X-ray crystallographic studies of the bacteriophage φ12 packaging motor Acta Crystallographica Section D: Biological Crystallography. 60: 588-590. PMID 14993703 DOI: 10.1107/S0907444904001052  1
2004 Salgado PS, Makeyev EV, Butcher SJ, Bamford DH, Stuart DI, Grimes JM. The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase. Structure (London, England : 1993). 12: 307-16. PMID 14962391 DOI: 10.1016/j.str.2004.01.012  1
2003 Mancini EJ, Grimes JM, Malby R, Sutton GC, Kainov DE, Juuti JT, Makeyev EV, Tuma R, Bamford DH, Stuart DI. Order and disorder in crystals of hexameric NTPases from dsRNA bacteriophages Acta Crystallographica - Section D Biological Crystallography. 59: 2337-2341. PMID 14646113 DOI: 10.1107/S0907444903018729  1
2003 Strömsten NJ, Benson SD, Burnett RM, Bamford DH, Bamford JK. The Bacillus thuringiensis linear double-stranded DNA phage Bam35, which is highly similar to the Bacillus cereus linear plasmid pBClin15, has a prophage state. Journal of Bacteriology. 185: 6985-9. PMID 14617663 DOI: 10.1128/Jb.185.23.6985-6989.2003  1
2003 Yang H, Gottlieb P, Wei H, Bamford DH, Makeyev EV. Temperature requirements for initiation of RNA-dependent RNA polymerization. Virology. 314: 706-15. PMID 14554097 DOI: 10.1016/S0042-6822(03)00460-4  0.01
2003 Kainov DE, Pirttimaa M, Tuma R, Butcher SJ, Thomas GJ, Bamford DH, Makeyev EV. RNA packaging device of double-stranded RNA bacteriophages, possibly as simple as hexamer of P4 protein. The Journal of Biological Chemistry. 278: 48084-91. PMID 12966097 DOI: 10.1074/jbc.M306928200  0.01
2003 Gowen B, Bamford JK, Bamford DH, Fuller SD. The tailless icosahedral membrane virus PRD1 localizes the proteins involved in genome packaging and injection at a unique vertex. Journal of Virology. 77: 7863-71. PMID 12829826 DOI: 10.1128/JVI.77.14.7863-7871.2003  0.01
2003 Kainov DE, Butcher SJ, Bamford DH, Tuma R. Conserved intermediates on the assembly pathway of double-stranded RNA bacteriophages. Journal of Molecular Biology. 328: 791-804. PMID 12729755 DOI: 10.1016/S0022-2836(03)00322-X  0.01
2003 Xu L, Benson SD, Butcher SJ, Bamford DH, Burnett RM. The receptor binding protein P2 of PRD1, a virus targeting antibiotic-resistant bacteria, has a novel fold suggesting multiple functions. Structure (London, England : 1993). 11: 309-22. PMID 12623018 DOI: 10.1016/S0969-2126(03)00023-6  1
2003 Cockburn JJB, Bamford JKH, Grimes JM, Bamford DH, Stuart DI. Crystallization of the membrane-containing bacteriophage PRD1 in quartz capillaries by vapour diffusion Acta Crystallographica - Section D Biological Crystallography. 59: 538-540. PMID 12595719 DOI: 10.1107/S0907444902023491  1
2003 Yang H, Makeyev EV, Butcher SJ, Gaidelyte A, Bamford DH. Two distinct mechanisms ensure transcriptional polarity in double-stranded RNA bacteriophages. Journal of Virology. 77: 1195-203. PMID 12502836 DOI: 10.1128/JVI.77.2.1195-1203.2003  0.01
2002 Bamford JKH, Cockburn JJB, Diprose J, Grimes JM, Sutton G, Stuart DI, Bamford DH. Diffraction quality crystals of PRD1, a 66-MDa dsDNA virus with an internal membrane Journal of Structural Biology. 139: 103-112. PMID 12406692 DOI: 10.1016/S1047-8477(02)00562-2  1
2002 Pirttimaa MJ, Paatero AO, Frilander MJ, Bamford DH. Nonspecific nucleoside triphosphatase P4 of double-stranded RNA bacteriophage phi6 is required for single-stranded RNA packaging and transcription. Journal of Virology. 76: 10122-7. PMID 12239286 DOI: 10.1128/Jvi.76.20.10122-10127.2002  1
2002 San Martín C, Huiskonen JT, Bamford JK, Butcher SJ, Fuller SD, Bamford DH, Burnett RM. Minor proteins, mobile arms and membrane-capsid interactions in the bacteriophage PRD1 capsid. Nature Structural Biology. 9: 756-63. PMID 12219080 DOI: 10.1038/Nsb837  1
2002 Bamford DH, Burnett RM, Stuart DI. Evolution of viral structure. Theoretical Population Biology. 61: 461-70. PMID 12167365 DOI: 10.1006/Tpbi.2002.1591  1
2002 Benson SD, Bamford JK, Bamford DH, Burnett RM. The X-ray crystal structure of P3, the major coat protein of the lipid-containing bacteriophage PRD1, at 1.65 A resolution. Acta Crystallographica. Section D, Biological Crystallography. 58: 39-59. PMID 11752778 DOI: 10.1107/S0907444901017279  1
2001 Martín CS, Burnett RM, de Haas F, Heinkel R, Rutten T, Fuller SD, Butcher SJ, Bamford DH. Combined EM/X-ray imaging yields a quasi-atomic model of the adenovirus-related bacteriophage PRD1 and shows key capsid and membrane interactions. Structure (London, England : 1993). 9: 917-30. PMID 11591347 DOI: 10.1016/S0969-2126(01)00642-6  1
2001 Butcher SJ, Grimes JM, Makeyev EV, Bamford DH, Stuart DI. A mechanism for initiating RNA-dependent RNA polymerization. Nature. 410: 235-40. PMID 11242087 DOI: 10.1038/35065653  1
2001 Bamford DH, Gilbert RJC, Grimes JM, Stuart DI. Macromolecular assemblies: Greater than their parts Current Opinion in Structural Biology. 11: 107-113. PMID 11179899 DOI: 10.1016/S0959-440X(00)00177-9  1
2000 Butcher SJ, Makeyev EV, Grimes JM, Stuart DI, Bamford DH. Crystallization and preliminary X-ray crystallographic studies on the bacteriophage phi6 RNA-dependent RNA polymerase. Acta Crystallographica. Section D, Biological Crystallography. 56: 1473-5. PMID 11053857 DOI: 10.1107/S0907444900010702  1
2000 Xu L, Butcher SJ, Benson SD, Bamford DH, Burnett RM. Crystallization and preliminary X-ray analysis of receptor-binding protein P2 of bacteriophage PRD1. Journal of Structural Biology. 131: 159-63. PMID 11042087 DOI: 10.1006/Jsbi.2000.4275  1
2000 Kivioja T, Ravantti J, Verkhovsky A, Ukkonen E, Bamford D. Local average intensity-based method for identifying spherical particles in electron micrographs. Journal of Structural Biology. 131: 126-134. PMID 11042083 DOI: 10.1006/Jsbi.2000.4279  0.01
2000 Bamford JK, Bamford DH. A new mutant class, made by targeted mutagenesis, of phage PRD1 reveals that protein P5 connects the receptor binding protein to the vertex. Journal of Virology. 74: 7781-6. PMID 10933684 DOI: 10.1128/jvi.74.17.7781-7786.2000  0.01
2000 Grahn AM, Haase J, Bamford DH, Lanka E. Components of the RP4 conjugative transfer apparatus form an envelope structure bridging inner and outer membranes of donor cells: implications for related macromolecule transport systems. Journal of Bacteriology. 182: 1564-74. PMID 10692361 DOI: 10.1128/Jb.182.6.1564-1574.2000  0.01
1999 Poranen MM, Daugelavicius R, Ojala PM, Hess MW, Bamford DH. A novel virus-host cell membrane interaction. Membrane voltage-dependent endocytic-like entry of bacteriophage straight phi6 nucleocapsid. The Journal of Cell Biology. 147: 671-82. PMID 10545509 DOI: 10.1083/jcb.147.3.671  1
1999 Benson SD, Bamford JK, Bamford DH, Burnett RM. Viral evolution revealed by bacteriophage PRD1 and human adenovirus coat protein structures. Cell. 98: 825-33. PMID 10499799 DOI: 10.1016/S0092-8674(00)81516-0  1
1999 Rydman PS, Caldentey J, Butcher SJ, Fuller SD, Rutten T, Bamford DH. Bacteriophage PRD1 contains a labile receptor-binding structure at each vertex. Journal of Molecular Biology. 291: 575-87. PMID 10448038 DOI: 10.1006/jmbi.1999.2978  0.01
1997 Daugelavicius R, Bamford JK, Grahn AM, Lanka E, Bamford DH. The IncP plasmid-encoded cell envelope-associated DNA transfer complex increases cell permeability. Journal of Bacteriology. 179: 5195-202. PMID 9260964 DOI: 10.1128/jb.179.16.5195-5202.1997  0.01
1997 Butcher SJ, Dokland T, Ojala PM, Bamford DH, Fuller SD. Intermediates in the assembly pathway of the double-stranded RNA virus phi6. The Embo Journal. 16: 4477-87. PMID 9250692 DOI: 10.1093/Emboj/16.14.4477  0.01
1997 Grahn AM, Haase J, Lanka E, Bamford DH. Assembly of a functional phage PRD1 receptor depends on 11 genes of the IncP plasmid mating pair formation complex. Journal of Bacteriology. 179: 4733-40. PMID 9244259 DOI: 10.1128/jb.179.15.4733-4740.1997  0.01
1995 Haase J, Lurz R, Grahn AM, Bamford DH, Lanka E. Bacterial conjugation mediated by plasmid RP4: RSF1010 mobilization, donor-specific phage propagation, and pilus production require the same Tra2 core components of a proposed DNA transport complex. Journal of Bacteriology. 177: 4779-91. PMID 7642506 DOI: 10.1128/Jb.177.16.4779-4791.1995  0.01
1994 Bamford DH, Wickner RB. Assembly of double-stranded RNA viruses: bacteriophage ø6 and yeast virus L-A Seminars in Virology. 5: 61-69. DOI: 10.1006/Smvy.1994.1007  1
1993 Luo C, Butcher S, Bamford DH. Isolation of a phospholipid-free protein shell of bacteriophage PRD1, an Escherichia coli virus with an internal membrane. Virology. 194: 564-9. PMID 8503174 DOI: 10.1006/viro.1993.1295  0.01
1993 Stewart PL, Ghosh S, Bamford DH, Burnett RM. Crystallization of the major coat protein of PRD1, a bacteriophage with an internal membrane Journal of Molecular Biology. 230: 349-352. PMID 8450547 DOI: 10.1006/Jmbi.1993.1148  1
1992 Kenney JM, Hantula J, Fuller SD, Mindich L, Ojala PM, Bamford DH. Bacteriophage φ6 envelope elucidated by chemical cross-linking, immunodetection, and cryoelectron microscopy Virology. 190: 635-644. PMID 1519356 DOI: 10.1016/0042-6822(92)90901-Z  1
1990 Hantula J, Korhonen TK, Bamford DH. Determination of taxonomic resolution capacity of conventional one-dimensional SDS-polyacrylamide gel electrophoresis of whole-cell proteins using Enterobacteriaceae. Fems Microbiology Letters. 58: 325-30. PMID 2227368 DOI: 10.1111/j.1574-6968.1990.tb13998.x  0.01
1985 Mindich L, MacKenzie G, Strassman J, McGraw T, Metzger S, Romantschuk M, Bamford D. cDNA cloning of portions of the bacteriophage phi 6 genome. Journal of Bacteriology. 162: 992-9. PMID 3858275 DOI: 10.1128/Jb.162.3.992-999.1985  1
1983 Bamford D, McGraw T, MacKenzie G, Mindich L. Identification of a protein bound to the termini of bacteriophage PRD1 DNA. Journal of Virology. 47: 311-6. PMID 6620455 DOI: 10.1128/Jvi.47.2.311-316.1983  1
1982 Mindich L, Bamford D, McGraw T, Mackenzie G. Assembly of bacteriophage PRD1: particle formation with wild-type and mutant viruses. Journal of Virology. 44: 1021-30. PMID 6816950 DOI: 10.1128/Jvi.44.3.1021-1030.1982  1
1982 Mindich L, Bamford D, Goldthwaite C, Laverty M, Mackenzie G. Isolation of nonsense mutants of lipid-containing bacteriophage PRD1. Journal of Virology. 44: 1013-20. PMID 6757459 DOI: 10.1128/Jvi.44.3.1013-1020.1982  1
1981 Bamford DH, Rouhiainen L, Takkinen K, Söderlund H. Comparison of the lipid-containing bacteriophages PRD1, PR3, PR4, PR5 and L17. The Journal of General Virology. 57: 365-73. PMID 7320707 DOI: 10.1099/0022-1317-57-2-365  0.01
1976 Meretoja T, Gripenberg U, Bamford D, Laamanen I, Sorsa M. Mutagenicity and toxicity of amitrole. II. Human lymphocyte culture tests Mutation Research\/Genetic Toxicology. 40: 191-195. PMID 958234 DOI: 10.1016/0165-1218(76)90044-6  0.01
1976 Laamanen I, Sorsa M, Bamford D, Gripenberg U, Meretoja T. Mutagenicity and toxicity of amitrole. I. Drosophila tests Mutation Research\/Genetic Toxicology. 40: 185-190. PMID 822329 DOI: 10.1016/0165-1218(76)90043-4  0.01
1976 Bamford D, Sorsa M, Gripenberg U, Laamanen I, Meretoja T. Mutagenicity and toxicity of amitrole. III. Microbial tests. Mutation Research\/Genetic Toxicology. 40: 197-202. PMID 785246 DOI: 10.1016/0165-1218(76)90045-8  0.01
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