| Year |
Citation |
Score |
| 2024 |
Webster MW, Chauvier A, Rahil H, Graziadei A, Charles K, Miropolskaya N, Takacs M, Saint-André C, Rappsilber J, Walter NG, Weixlbaumer A. Molecular basis of mRNA delivery to the bacterial ribosome. Science (New York, N.Y.). 386: eado8476. PMID 39607923 DOI: 10.1126/science.ado8476 |
0.302 |
|
| 2024 |
Li J, Walter NG, Chen SJ. smFRET-assisted RNA structure prediction. Communications in Information and Systems. 24: 163-179. PMID 39524454 DOI: 10.4310/cis.241021213225 |
0.379 |
|
| 2024 |
Chauvier A, Walter NG. Beyond ligand binding: Single molecule observation reveals how riboswitches integrate multiple signals to balance bacterial gene regulation. Current Opinion in Structural Biology. 88: 102893. PMID 39067113 DOI: 10.1016/j.sbi.2024.102893 |
0.417 |
|
| 2024 |
Chauvier A, Dandpat SS, Romero R, Walter NG. A nascent riboswitch helix orchestrates robust transcriptional regulation through signal integration. Nature Communications. 15: 3955. PMID 38729929 DOI: 10.1038/s41467-024-48409-8 |
0.376 |
|
| 2024 |
Walter N, Chauvier A, Dandpat S, Romero R. A nascent riboswitch helix orchestrates robust transcriptional regulation through signal integration. Research Square. PMID 38352525 DOI: 10.21203/rs.3.rs-3849447/v1 |
0.376 |
|
| 2024 |
Chauvier A, Walter NG. Regulation of bacterial gene expression by non-coding RNA: It is all about time! Cell Chemical Biology. 31: 71-85. PMID 38211587 DOI: 10.1016/j.chembiol.2023.12.011 |
0.354 |
|
| 2023 |
Hou Q, Chatterjee S, Lund PE, Suddala KC, Walter NG. Single-molecule FRET observes opposing effects of urea and TMAO on structurally similar meso- and thermophilic riboswitch RNAs. Nucleic Acids Research. PMID 37855661 DOI: 10.1093/nar/gkad866 |
0.844 |
|
| 2023 |
Gao G, Sumrall ES, Pitchiaya S, Bitzer M, Alberti S, Walter NG. Biomolecular condensates in kidney physiology and disease. Nature Reviews. Nephrology. PMID 37752323 DOI: 10.1038/s41581-023-00767-0 |
0.657 |
|
| 2023 |
Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG. Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand. Nature Structural & Molecular Biology. PMID 37264140 DOI: 10.1038/s41594-023-01002-x |
0.356 |
|
| 2023 |
Pal N, Walter NG. Using Single-Molecule FRET to Evaluate DNA Nanodevices at Work. Methods in Molecular Biology (Clifton, N.J.). 2639: 157-172. PMID 37166717 DOI: 10.1007/978-1-0716-3028-0_10 |
0.583 |
|
| 2023 |
Duran E, Schmidt A, Welty R, Jalihal AP, Pitchiaya S, Walter NG. Utilizing functional cell-free extracts to dissect ribonucleoprotein complex biology at single-molecule resolution. Wiley Interdisciplinary Reviews. Rna. e1787. PMID 37042458 DOI: 10.1002/wrna.1787 |
0.77 |
|
| 2022 |
Welty R, Schmidt A, Walter NG. Probing Transient Riboswitch Structures via Single Molecule Accessibility Analysis. Methods in Molecular Biology (Clifton, N.J.). 2568: 37-51. PMID 36227561 DOI: 10.1007/978-1-0716-2687-0_4 |
0.457 |
|
| 2022 |
Chatterjee T, Johnson-Buck A, Walter NG. Highly sensitive protein detection by aptamer-based single-molecule kinetic fingerprinting. Biosensors & Bioelectronics. 216: 114639. PMID 36037714 DOI: 10.1016/j.bios.2022.114639 |
0.667 |
|
| 2022 |
Ray S, Dandpat SS, Chatterjee S, Walter NG. Precise tuning of bacterial translation initiation by non-equilibrium 5'-UTR unfolding observed in single mRNAs. Nucleic Acids Research. PMID 35892287 DOI: 10.1093/nar/gkac635 |
0.767 |
|
| 2022 |
Yadav R, Widom JR, Chauvier A, Walter NG. An anionic ligand snap-locks a long-range interaction in a magnesium-folded riboswitch. Nature Communications. 13: 207. PMID 35017489 DOI: 10.1038/s41467-021-27827-y |
0.743 |
|
| 2021 |
Chauvier A, Ajmera P, Yadav R, Walter NG. Dynamic competition between a ligand and transcription factor NusA governs riboswitch-mediated transcription regulation. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34782462 DOI: 10.1073/pnas.2109026118 |
0.722 |
|
| 2021 |
Chandler M, Johnson B, Khisamutdinov E, Dobrovolskaia MA, Sztuba-Solinska J, Salem AK, Breyne K, Chammas R, Walter NG, Contreras LM, Guo P, Afonin KA. The International Society of RNA Nanotechnology and Nanomedicine (ISRNN): The Present and Future of the Burgeoning Field. Acs Nano. PMID 34677049 DOI: 10.1021/acsnano.0c10240 |
0.339 |
|
| 2021 |
Chatterjee S, Chauvier A, Dandpat SS, Artsimovitch I, Walter NG. A translational riboswitch coordinates nascent transcription-translation coupling. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33850018 DOI: 10.1073/pnas.2023426118 |
0.754 |
|
| 2021 |
Duran EC, Walter NG. Sisyphus observed: Unraveling the high ATP usage of an RNA chaperone. The Journal of Biological Chemistry. 296: 100265. PMID 33837746 DOI: 10.1016/j.jbc.2021.100265 |
0.384 |
|
| 2021 |
Jiang S, Pal N, Hong F, Fahmi NE, Hu H, Vrbanac M, Yan H, Walter NG, Liu Y. Regulating DNA Self-Assembly Dynamics with Controlled Nucleation. Acs Nano. PMID 33705654 DOI: 10.1021/acsnano.1c00027 |
0.551 |
|
| 2021 |
Ray S, Pal N, Walter NG. Single bacterial resolvases first exploit, then constrain intrinsic dynamics of the Holliday junction to direct recombination. Nucleic Acids Research. PMID 33619520 DOI: 10.1093/nar/gkab096 |
0.583 |
|
| 2020 |
Scull CE, Dandpat SS, Romero RA, Walter NG. Transcriptional Riboswitches Integrate Timescales for Bacterial Gene Expression Control. Frontiers in Molecular Biosciences. 7: 607158. PMID 33521053 DOI: 10.3389/fmolb.2020.607158 |
0.344 |
|
| 2020 |
Jalihal AP, Schmidt A, Gao G, Little SR, Pitchiaya S, Walter NG. Hyperosmotic phase separation: Condensates beyond inclusions, granules and organelles. The Journal of Biological Chemistry. 296: 100044. PMID 33429213 DOI: 10.1074/jbc.REV120.010899 |
0.657 |
|
| 2020 |
Mandal S, Li Z, Chatterjee T, Khanna K, Montoya K, Dai L, Petersen C, Li L, Tewari M, Johnson-Buck A, Walter NG. Direct Kinetic Fingerprinting for High-Accuracy Single-Molecule Counting of Diverse Disease Biomarkers. Accounts of Chemical Research. PMID 33382587 DOI: 10.1021/acs.accounts.0c00621 |
0.663 |
|
| 2020 |
Jalihal AP, Schmidt A, Gao G, Little S, Pitchiaya S, Walter NG. Hyperosmotic phase separation: Condensates beyond inclusions, granules and organelles. The Journal of Biological Chemistry. PMID 33168632 DOI: 10.1074/jbc.REV120.010899 |
0.765 |
|
| 2020 |
Chatterjee T, Knappik A, Sandford E, Tewari M, Choi SW, Strong WB, Thrush EP, Oh KJ, Liu N, Walter NG, Johnson-Buck A. Direct kinetic fingerprinting and digital counting of single protein molecules. Proceedings of the National Academy of Sciences of the United States of America. PMID 32868420 DOI: 10.1073/Pnas.2008312117 |
0.674 |
|
| 2020 |
Chatterjee T, Li Z, Khanna K, Montoya K, Tewari M, Walter NG, Johnson-Buck A. Ultraspecific analyte detection by direct kinetic fingerprinting of single molecules. Trends in Analytical Chemistry : Trac. 123. PMID 32863484 DOI: 10.1016/J.Trac.2019.115764 |
0.683 |
|
| 2020 |
Jalihal AP, Pitchiaya S, Xiao L, Bawa P, Jiang X, Bedi K, Parolia A, Cieslik M, Ljungman M, Chinnaiyan AM, Walter NG. Multivalent Proteins Rapidly and Reversibly Phase-Separate upon Osmotic Cell Volume Change. Molecular Cell. PMID 32857953 DOI: 10.1016/J.Molcel.2020.08.004 |
0.685 |
|
| 2020 |
Schmidt A, Gao G, Little SR, Jalihal AP, Walter NG. Following the messenger: Recent innovations in live cell single molecule fluorescence imaging. Wiley Interdisciplinary Reviews. Rna. e1587. PMID 31990126 DOI: 10.1002/Wrna.1587 |
0.84 |
|
| 2020 |
Little SR, Walter NG. Visualizing Arc mRNA transfer using single molecule fluorescence assays The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.07254 |
0.313 |
|
| 2020 |
Welty RS, Walter NG. RNA Structural Ensembles Act as a Gate Keeper of 3′ Alternative Splicing Biophysical Journal. 118: 67a. DOI: 10.1016/J.Bpj.2019.11.541 |
0.474 |
|
| 2020 |
Schmidt A, Jalihal AP, Gao G, Walter NG. Export/Import of Exosomal cIRS-7: A Single Molecule Analysis of Circular RNA Trafficking Biophysical Journal. 118: 573a. DOI: 10.1016/J.Bpj.2019.11.3117 |
0.468 |
|
| 2020 |
Dandpat SS, Ray S, Chatterjee S, Walter NG. Kinetic Variability at The 5’ UTR of Bacterial mRNA Leads to Narrow Dynamic Range and High Sensitivity in 30S Ribosome Binding Biophysical Journal. 118: 546a. DOI: 10.1016/J.Bpj.2019.11.2985 |
0.739 |
|
| 2020 |
Chatterjee S, Chauvier A, Walter NG. Interaction between Transcription and Translation Machineries on a Nascent RNA with Higher Order Structure Biophysical Journal. 118: 544a. DOI: 10.1016/J.Bpj.2019.11.2978 |
0.451 |
|
| 2020 |
Gao G, Jalihal AP, Schmidt A, Walter NG. RNA Trafficking between Membraneless Organelles at Single-Molecule Resolution in Live Cells Biophysical Journal. 118: 467a-468a. DOI: 10.1016/J.Bpj.2019.11.2596 |
0.455 |
|
| 2019 |
Lund PE, Chatterjee S, Daher M, Walter NG. Protein unties the pseudoknot: S1-mediated unfolding of RNA higher order structure. Nucleic Acids Research. PMID 31832686 DOI: 10.1093/Nar/Gkz1166 |
0.837 |
|
| 2019 |
Suddala KC, Price IR, Dandpat SS, Janeček M, Kührová P, Šponer J, Banáš P, Ke A, Walter NG. Local-to-global signal transduction at the core of a Mn sensing riboswitch. Nature Communications. 10: 4304. PMID 31541094 DOI: 10.1038/S41467-019-12230-5 |
0.796 |
|
| 2019 |
Widom JR, Rai V, Rohlman CE, Walter NG. Versatile transcription control based on reversible dCas9 binding. Rna (New York, N.Y.). PMID 31320398 DOI: 10.1261/Rna.071613.119 |
0.434 |
|
| 2019 |
Walter NG. Biological Pathway Specificity in the Cell-Does Molecular Diversity Matter? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e1800244. PMID 31245864 DOI: 10.1002/Bies.201800244 |
0.32 |
|
| 2019 |
Pitchiaya S, Mourao MDA, Jalihal AP, Xiao L, Jiang X, Chinnaiyan AM, Schnell S, Walter NG. Dynamic Recruitment of Single RNAs to Processing Bodies Depends on RNA Functionality. Molecular Cell. PMID 30952514 DOI: 10.1016/J.Molcel.2019.03.001 |
0.741 |
|
| 2019 |
Chauvier A, Cabello-Villegas J, Walter NG. Probing RNA structure and interaction dynamics at the single molecule level. Methods (San Diego, Calif.). PMID 30951833 DOI: 10.1016/J.Ymeth.2019.04.002 |
0.541 |
|
| 2019 |
Jalihal AP, Lund PE, Walter NG. Coming Together: RNAs and Proteins Assemble under the Single-Molecule Fluorescence Microscope. Cold Spring Harbor Perspectives in Biology. 11. PMID 30936188 DOI: 10.1101/Cshperspect.A032441 |
0.497 |
|
| 2019 |
Walter NG. Introduction to "Convergence of Science and Technology: Fluorescent Resolution of Single RNA Molecules". Methods (San Diego, Calif.). 153: 1-2. PMID 30616831 DOI: 10.1016/J.Ymeth.2018.12.003 |
0.43 |
|
| 2018 |
Weng R, Lou S, Li L, Zhang Y, Qiu J, Su X, Qian Y, Walter NG. Single-Molecule Kinetic Fingerprinting for the Ultrasensitive Detection of Small Molecules with Aptasensors. Analytical Chemistry. PMID 30562003 DOI: 10.1021/Acs.Analchem.8B04145 |
0.406 |
|
| 2018 |
Widom JR, Nedialkov YA, Rai V, Hayes RL, Brooks CL, Artsimovitch I, Walter NG. Ligand Modulates Cross-Coupling between Riboswitch Folding and Transcriptional Pausing. Molecular Cell. 72: 541-552.e6. PMID 30388413 DOI: 10.1016/J.Molcel.2018.08.046 |
0.475 |
|
| 2018 |
Ray S, Chauvier A, Walter NG. Kinetics coming into focus: Single-molecule microscopy of riboswitch dynamics. Rna Biology. PMID 30328748 DOI: 10.1080/15476286.2018.1536594 |
0.535 |
|
| 2018 |
Hayward SL, Lund PE, Kang Q, Johnson-Buck A, Tewari M, Walter NG. Ultra-specific and Amplification-free Quantification of Mutant DNA by Single-molecule Kinetic Fingerprinting. Journal of the American Chemical Society. PMID 30125495 DOI: 10.1021/Jacs.8B06685 |
0.335 |
|
| 2018 |
Johnson-Buck A, Li J, Tewari M, Walter NG. A guide to nucleic acid detection by single-molecule kinetic fingerprinting. Methods (San Diego, Calif.). PMID 30099084 DOI: 10.1016/J.Ymeth.2018.08.002 |
0.35 |
|
| 2018 |
Suddala KC, Cabello-Villegas J, Michnicka M, Marshall C, Nikonowicz EP, Walter NG. Hierarchical mechanism of amino acid sensing by the T-box riboswitch. Nature Communications. 9: 1896. PMID 29760498 DOI: 10.1038/S41467-018-04305-6 |
0.789 |
|
| 2018 |
Walter NG, Maquat LE. Introduction-RNA: From Single Molecules to Medicine. Chemical Reviews. 118: 4117-4119. PMID 29690768 DOI: 10.1021/Acs.Chemrev.8B00095 |
0.46 |
|
| 2018 |
Valero J, Pal N, Dhakal S, Walter NG, Famulok M. A bio-hybrid DNA rotor-stator nanoengine that moves along predefined tracks. Nature Nanotechnology. PMID 29632399 DOI: 10.1038/S41565-018-0109-Z |
0.619 |
|
| 2018 |
Michelini F, Jalihal AP, Francia S, Meers C, Neeb ZT, Rossiello F, Gioia U, Aguado J, Jones-Weinert C, Luke B, Biamonti G, Nowacki M, Storici F, Carninci P, Walter NG, et al. From "Cellular" RNA to "Smart" RNA: Multiple Roles of RNA in Genome Stability and Beyond. Chemical Reviews. PMID 29600857 DOI: 10.1021/Acs.Chemrev.7B00487 |
0.481 |
|
| 2018 |
Ray S, Widom JR, Walter NG. Life under the Microscope: Single-Molecule Fluorescence Highlights the RNA World. Chemical Reviews. PMID 29363314 DOI: 10.1021/Acs.Chemrev.7B00519 |
0.508 |
|
| 2018 |
Šponer J, Bussi G, Krepl M, Banáš P, Bottaro S, Cunha RA, Gil-Ley A, Pinamonti G, Poblete S, Jurečka P, Walter NG, Otyepka M. RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview. Chemical Reviews. PMID 29297679 DOI: 10.1021/Acs.Chemrev.7B00427 |
0.494 |
|
| 2017 |
Michelini F, Pitchiaya S, Vitelli V, Sharma S, Gioia U, Pessina F, Cabrini M, Wang Y, Capozzo I, Iannelli F, Matti V, Francia S, Shivashankar GV, Walter NG, d'Adda di Fagagna F. Damage-induced lncRNAs control the DNA damage response through interaction with DDRNAs at individual double-strand breaks. Nature Cell Biology. 19: 1400-1411. PMID 29180822 DOI: 10.1038/Ncb3643 |
0.737 |
|
| 2017 |
Daher M, Widom JR, Tay W, Walter NG. Soft interactions with model crowders and non-canonical interactions with cellular proteins stabilize RNA folding. Journal of Molecular Biology. PMID 29128594 DOI: 10.1016/J.Jmb.2017.10.030 |
0.829 |
|
| 2017 |
Daher M, Mustoe AM, Morriss-Andrews A, Brooks Iii CL, Walter NG. Tuning RNA folding and function through rational design of junction topology. Nucleic Acids Research. 45: 9706-9715. PMID 28934478 DOI: 10.1093/Nar/Gkx614 |
0.674 |
|
| 2017 |
Pitchiaya S, Heinicke LA, Park JI, Cameron EL, Walter NG. Resolving Subcellular miRNA Trafficking and Turnover at Single-Molecule Resolution. Cell Reports. 19: 630-642. PMID 28423324 DOI: 10.1016/J.Celrep.2017.03.075 |
0.678 |
|
| 2017 |
Walter NG. Single Molecules in Focus: From RNA Splicing to Silencing Biophysical Journal. 112: 6a. DOI: 10.1016/J.Bpj.2016.11.054 |
0.456 |
|
| 2016 |
Custer TC, Walter NG. In vitro labeling strategies for in cellulo fluorescence microscopy of single ribonucleoprotein machines. Protein Science : a Publication of the Protein Society. PMID 28028853 DOI: 10.1002/Pro.3108 |
0.476 |
|
| 2016 |
Rohlman CE, Blanco MR, Walter NG. Putting Humpty-Dumpty Together: Clustering the Functional Dynamics of Single Biomolecular Machines Such as the Spliceosome. Methods in Enzymology. 581: 257-283. PMID 27793282 DOI: 10.1016/Bs.Mie.2016.08.022 |
0.413 |
|
| 2016 |
Fu J, Yang YR, Dhakal S, Zhao Z, Liu M, Zhang T, Walter NG, Yan H. Assembly of multienzyme complexes on DNA nanostructures. Nature Protocols. 11: 2243-2273. PMID 27763626 DOI: 10.1038/Nprot.2016.139 |
0.311 |
|
| 2016 |
Suresh MV, Thomas B, Machado-Aranda D, Dolgachev VA, Ramakrishnan SK, Talarico N, Cavassani K, Sherman MA, Hemmila MR, Kunkel SL, Walter NG, Hogaboam CM, Raghavendran K. Double-Stranded RNA Interacts With Toll-Like Receptor 3 in Driving the Acute Inflammatory Response Following Lung Contusion. Critical Care Medicine. PMID 27509390 DOI: 10.1097/Ccm.0000000000001879 |
0.333 |
|
| 2016 |
Semlow DR, Blanco MR, Walter NG, Staley JP. Spliceosomal DEAH-Box ATPases Remodel Pre-mRNA to Activate Alternative Splice Sites. Cell. 164: 985-98. PMID 26919433 DOI: 10.1016/J.Cell.2016.01.025 |
0.387 |
|
| 2016 |
Zhao Z, Fu J, Dhakal S, Johnson-Buck A, Liu M, Zhang T, Woodbury NW, Liu Y, Walter NG, Yan H. Nanocaged enzymes with enhanced catalytic activity and increased stability against protease digestion. Nature Communications. 7: 10619. PMID 26861509 DOI: 10.1038/Ncomms10619 |
0.306 |
|
| 2016 |
Shankar S, Pitchiaya S, Malik R, Kothari V, Hosono Y, Yocum AK, Gundlapalli H, White Y, Firestone A, Cao X, Dhanasekaran SM, Stuckey JA, Bollag G, Shannon K, Walter NG, et al. KRAS Engages AGO2 to Enhance Cellular Transformation. Cell Reports. PMID 26854235 DOI: 10.1016/J.Celrep.2016.01.034 |
0.687 |
|
| 2016 |
Dhakal S, Adendorff MR, Liu M, Yan H, Bathe M, Walter NG. Rational design of DNA-actuated enzyme nanoreactors guided by single molecule analysis. Nanoscale. PMID 26788713 DOI: 10.1039/C5Nr07263H |
0.316 |
|
| 2016 |
Rinaldi AJ, Lund PE, Blanco MR, Walter NG. The Shine-Dalgarno sequence of riboswitch-regulated single mRNAs shows ligand-dependent accessibility bursts. Nature Communications. 7: 8976. PMID 26781350 DOI: 10.1038/Ncomms9976 |
0.41 |
|
| 2016 |
Shankar S, Pitchiaya S, Malik R, Kothari V, Hosono Y, Yocum AK, Gundlapalli H, White Y, Firestone A, Cao X, Dhanasekaran SM, Stuckey J, Bollag G, Shannon K, Walter N, et al. Abstract LB-008: KRAS engages AGO2 to enhance cellular transformation Cancer Research. 76. DOI: 10.1158/1538-7445.Am2016-Lb-008 |
0.657 |
|
| 2015 |
Suddala KC, Wang J, Hou Q, Walter NG. Mg2+ Shifts Ligand-Mediated Folding of a Riboswitch from Induced-Fit to Conformational Selection. Journal of the American Chemical Society. PMID 26471732 DOI: 10.1021/Jacs.5B09740 |
0.807 |
|
| 2015 |
Blanco MR, Martin JS, Kahlscheuer ML, Krishnan R, Abelson J, Laederach A, Walter NG. Single Molecule Cluster Analysis dissects splicing pathway conformational dynamics. Nature Methods. 12: 1077-84. PMID 26414013 DOI: 10.1038/Nmeth.3602 |
0.387 |
|
| 2015 |
Mallik L, Dhakal S, Nichols J, Mahoney J, Dosey AM, Jiang S, Sunahara RK, Skiniotis G, Walter NG. Electron Microscopic Visualization of Protein Assemblies on Flattened DNA Origami. Acs Nano. PMID 26149412 DOI: 10.1021/Acsnano.5B01841 |
0.32 |
|
| 2015 |
Liberman JA, Suddala KC, Aytenfisu A, Chan D, Belashov IA, Salim M, Mathews DH, Spitale RC, Walter NG, Wedekind JE. Structural analysis of a class III preQ1 riboswitch reveals an aptamer distant from a ribosome-binding site regulated by fast dynamics. Proceedings of the National Academy of Sciences of the United States of America. PMID 26106162 DOI: 10.1073/Pnas.1503955112 |
0.81 |
|
| 2015 |
Johnson-Buck A, Su X, Giraldez MD, Zhao M, Tewari M, Walter NG. Kinetic fingerprinting to identify and count single nucleic acids. Nature Biotechnology. PMID 26098451 DOI: 10.1038/Nbt.3246 |
0.301 |
|
| 2015 |
Kahlscheuer ML, Widom J, Walter NG. Single-Molecule Pull-Down FRET to Dissect the Mechanisms of Biomolecular Machines. Methods in Enzymology. 558: 539-70. PMID 26068753 DOI: 10.1016/Bs.Mie.2015.01.009 |
0.508 |
|
| 2015 |
Dubecký M, Walter NG, Šponer J, Otyepka M, Banáš P. Chemical feasibility of the general Acid/Base mechanism of glmS ribozyme self-cleavage. Biopolymers. PMID 25858644 DOI: 10.1002/Bip.22657 |
0.353 |
|
| 2015 |
Walter NG. Going viral: riding the RNA wave to discovery. Rna (New York, N.Y.). 21: 756-7. PMID 25780223 DOI: 10.1261/Rna.049403.114 |
0.486 |
|
| 2015 |
Mlýnský V, Kührová P, Zgarbová M, Jure?ka P, Walter NG, Otyepka M, Šponer J, Banáš P. Reactive conformation of the active site in the hairpin ribozyme achieved by molecular dynamics simulations with ε/ζ force field reparametrizations. The Journal of Physical Chemistry. B. 119: 4220-9. PMID 25692537 DOI: 10.1021/Jp512069N |
0.438 |
|
| 2015 |
Sripathi KN, Banáš P, Réblová K, Šponer J, Otyepka M, Walter NG. Wobble pairs of the HDV ribozyme play specific roles in stabilization of active site dynamics. Physical Chemistry Chemical Physics : Pccp. 17: 5887-900. PMID 25631765 DOI: 10.1039/C4Cp05083E |
0.417 |
|
| 2015 |
Nyati S, Schinske-Sebolt K, Pitchiaya S, Chekhovskiy K, Chator A, Chaudhry N, Dosch J, Van Dort ME, Varambally S, Kumar-Sinha C, Nyati MK, Ray D, Walter NG, Yu H, Ross BD, et al. The kinase activity of the Ser/Thr kinase BUB1 promotes TGF-β signaling. Science Signaling. 8: ra1. PMID 25564677 DOI: 10.1126/Scisignal.2005379 |
0.672 |
|
| 2015 |
Bartke RM, Cameron EL, Cristie-David AS, Custer TC, Denies MS, Daher M, Dhakal S, Ghosh S, Heinicke LA, Hoff JD, Hou Q, Kahlscheuer ML, Karslake J, Krieger AG, Li J, ... ... Walter NG, et al. Meeting report: SMART timing-principles of single molecule techniques course at the University of Michigan 2014. Biopolymers. 103: 296-302. PMID 25546606 DOI: 10.1002/Bip.22603 |
0.779 |
|
| 2015 |
Mlýnský V, Walter NG, Šponer J, Otyepka M, Banáš P. The role of an active site Mg(2+) in HDV ribozyme self-cleavage: insights from QM/MM calculations. Physical Chemistry Chemical Physics : Pccp. 17: 670-9. PMID 25412464 DOI: 10.1039/C4Cp03857F |
0.405 |
|
| 2015 |
Rinaldi AJ, Suddala KC, Walter NG. Native purification and labeling of RNA for single molecule fluorescence studies. Methods in Molecular Biology (Clifton, N.J.). 1240: 63-95. PMID 25352138 DOI: 10.1007/978-1-4939-1896-6_6 |
0.83 |
|
| 2015 |
Shankar S, Malik R, Kothari V, Hosono Y, Pitchiaya S, Kalyana-Sundaram S, Yocum A, Escara-Wilke J, Gundlapalli H, Chinnaswamy K, Shuler M, Poliakov A, Wang X, Krishnan V, White Y, ... ... Walter NG, et al. Abstract LB-058: Novel interactions of the RAS oncoprotein Cancer Research. 75. DOI: 10.1158/1538-7445.Am2015-Lb-058 |
0.67 |
|
| 2015 |
Dhakal S, Liu M, Adendorff MR, Bathe M, Yan H, Walter NG. Mechanical Modulation of Enzyme Activity by Rationally Designed DNA Tweezers: From the Ensemble to the Single-Molecule Level Biophysical Journal. 108: 186a-187a. DOI: 10.1016/J.Bpj.2014.11.1030 |
0.39 |
|
| 2014 |
Suddala KC, Walter NG. Riboswitch structure and dynamics by smFRET microscopy. Methods in Enzymology. 549: 343-73. PMID 25432756 DOI: 10.1016/B978-0-12-801122-5.00015-5 |
0.828 |
|
| 2014 |
Widom JR, Dhakal S, Heinicke LA, Walter NG. Single-molecule tools for enzymology, structural biology, systems biology and nanotechnology: an update. Archives of Toxicology. 88: 1965-85. PMID 25212907 DOI: 10.1007/S00204-014-1357-9 |
0.36 |
|
| 2014 |
Fu J, Yang YR, Johnson-Buck A, Liu M, Liu Y, Walter NG, Woodbury NW, Yan H. Multi-enzyme complexes on DNA scaffolds capable of substrate channelling with an artificial swinging arm. Nature Nanotechnology. 9: 531-6. PMID 24859813 DOI: 10.1038/Nnano.2014.100 |
0.318 |
|
| 2014 |
Sripathi KN, Tay WW, Banáš P, Otyepka M, Šponer J, Walter NG. Disparate HDV ribozyme crystal structures represent intermediates on a rugged free-energy landscape. Rna (New York, N.Y.). 20: 1112-28. PMID 24854621 DOI: 10.1261/Rna.044982.114 |
0.833 |
|
| 2014 |
Johnson-Buck A, Walter NG. Discovering anomalous hybridization kinetics on DNA nanostructures using single-molecule fluorescence microscopy. Methods (San Diego, Calif.). 67: 177-84. PMID 24602840 DOI: 10.1016/J.Ymeth.2014.02.032 |
0.313 |
|
| 2014 |
Pitchiaya S, Heinicke LA, Custer TC, Walter NG. Single molecule fluorescence approaches shed light on intracellular RNAs. Chemical Reviews. 114: 3224-65. PMID 24417544 DOI: 10.1021/Cr400496Q |
0.778 |
|
| 2014 |
Grima R, Walter NG, Schnell S. Single-molecule enzymology à la Michaelis-Menten. The Febs Journal. 281: 518-30. PMID 24289171 DOI: 10.1111/Febs.12663 |
0.32 |
|
| 2014 |
Nyati S, Schinske-Sebolt K, Pitchiaya S, Chekhovskiy K, Chator A, Chaudhry N, Dosch J, Dort MEV, Varambally S, Kumar-Sinha C, Nyati MK, Ray D, Walter NG, Yu H, Ross BD, et al. Abstract 1137: Bub1 is a key regulator of TGF-β signaling Cancer Research. 74: 1137-1137. DOI: 10.1158/1538-7445.Am2014-1137 |
0.665 |
|
| 2014 |
Kahlscheuer ML, Blanco M, Walter N. Single Molecule Characterization of Pre-mRNA Dynamics throughout Spliceosome Assembly and Catalysis Biophysical Journal. 106: 494a. DOI: 10.1016/J.Bpj.2013.11.2765 |
0.456 |
|
| 2013 |
Krishnan R, Blanco MR, Kahlscheuer ML, Abelson J, Guthrie C, Walter NG. Biased Brownian ratcheting leads to pre-mRNA remodeling and capture prior to first-step splicing. Nature Structural & Molecular Biology. 20: 1450-7. PMID 24240612 DOI: 10.1038/Nsmb.2704 |
0.426 |
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| 2013 |
Walter NG. Editorial for "non-coding RNA methods". Methods (San Diego, Calif.). 63: 93-4. PMID 24119771 DOI: 10.1016/J.Ymeth.2013.09.008 |
0.375 |
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| 2013 |
Ma J, Liu Z, Michelotti N, Pitchiaya S, Veerapaneni R, Androsavich JR, Walter NG, Yang W. High-resolution three-dimensional mapping of mRNA export through the nuclear pore. Nature Communications. 4: 2414. PMID 24008311 DOI: 10.1038/Ncomms3414 |
0.716 |
|
| 2013 |
Suddala KC, Rinaldi AJ, Feng J, Mustoe AM, Eichhorn CD, Liberman JA, Wedekind JE, Al-Hashimi HM, Brooks CL, Walter NG. Single transcriptional and translational preQ1 riboswitches adopt similar pre-folded ensembles that follow distinct folding pathways into the same ligand-bound structure. Nucleic Acids Research. 41: 10462-75. PMID 24003028 DOI: 10.1093/Nar/Gkt798 |
0.819 |
|
| 2013 |
Pitchiaya S, Krishnan V, Custer TC, Walter NG. Dissecting non-coding RNA mechanisms in cellulo by Single-molecule High-Resolution Localization and Counting. Methods (San Diego, Calif.). 63: 188-99. PMID 23820309 DOI: 10.1016/J.Ymeth.2013.05.028 |
0.728 |
|
| 2013 |
Johnson-Buck A, Nangreave J, Jiang S, Yan H, Walter NG. Multifactorial modulation of binding and dissociation kinetics on two-dimensional DNA nanostructures. Nano Letters. 13: 2754-9. PMID 23701430 DOI: 10.1021/Nl400976S |
0.331 |
|
| 2013 |
Todd GC, Walter NG. Secondary structure of bacteriophage T4 gene 60 mRNA: implications for translational bypassing. Rna (New York, N.Y.). 19: 685-700. PMID 23492219 DOI: 10.1261/Rna.037291.112 |
0.629 |
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| 2013 |
Johnson-Buck A, Nangreave J, Kim DN, Bathe M, Yan H, Walter NG. Super-resolution fingerprinting detects chemical reactions and idiosyncrasies of single DNA pegboards. Nano Letters. 13: 728-33. PMID 23356935 DOI: 10.1021/Nl304415B |
0.33 |
|
| 2013 |
Tay W, Walter NG. Investigating the Role of an Extended Hydrogen Bonding Network within the Hairpin Ribozyme Active Site Biophysical Journal. 104: 333a-334a. DOI: 10.1016/J.Bpj.2012.11.1854 |
0.788 |
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| 2013 |
Sripathi K, Banáš P, Tay W, Poner J, Walter N. The Most Recent, Catalytically Fit HDV Ribozyme Exhibits Minimal Global and Small-Scale Conformational Change upon Cleavage Biophysical Journal. 104: 264a. DOI: 10.1016/J.Bpj.2012.11.1481 |
0.827 |
|
| 2012 |
Pitchiaya S, Androsavich JR, Walter NG. Intracellular single molecule microscopy reveals two kinetically distinct pathways for microRNA assembly. Embo Reports. 13: 709-15. PMID 22688967 DOI: 10.1038/Embor.2012.85 |
0.709 |
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| 2012 |
Michelotti N, Johnson-Buck A, Manzo AJ, Walter NG. Beyond DNA origami: the unfolding prospects of nucleic acid nanotechnology. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. 4: 139-52. PMID 22131292 DOI: 10.1002/Wnan.170 |
0.304 |
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| 2012 |
Eichhorn CD, Feng J, Suddala KC, Walter NG, Brooks CL, Al-Hashimi HM. Unraveling the structural complexity in a single-stranded RNA tail: implications for efficient ligand binding in the prequeuosine riboswitch. Nucleic Acids Research. 40: 1345-55. PMID 22009676 DOI: 10.1093/Nar/Gkr833 |
0.822 |
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| 2012 |
Kahlscheuer ML, Walter NG. The Development of Methods for the Site-Specific Fluorescent Labeling of Spliceosomal Proteins for use in Single-Molecule Studies Biophysical Journal. 102: 484a. DOI: 10.1016/J.Bpj.2011.11.2652 |
0.429 |
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| 2012 |
Blanco MR, Krishnan R, Kahlscheuer ML, Abelson J, Guthrie C, Walter NG. Single Molecule FRET Characterization of Pre-mRNA Splicing: Substrate Dynamics during Recognition and Catalysis Biophysical Journal. 102: 278a. DOI: 10.1016/J.Bpj.2011.11.1532 |
0.493 |
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| 2012 |
Sripathi K, Banáš P, Tay W, Šponer J, Otyepka M, Walter NG. Structure-Function Relationships Within the Hepatitis Delta Virus Ribozyme Biophysical Journal. 102: 277a. DOI: 10.1016/J.Bpj.2011.11.1530 |
0.823 |
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| 2012 |
Šponer J, Otyepka M, Banáš P, Réblová K, Walter NG. Chapter 6: Molecular dynamics simulations of RNA molecules Rsc Biomolecular Sciences. 129-155. |
0.326 |
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| 2011 |
Sobhy MA, Elshenawy MM, Takahashi M, Whitman BH, Walter NG, Hamdan SM. Versatile single-molecule multi-color excitation and detection fluorescence setup for studying biomolecular dynamics. The Review of Scientific Instruments. 82: 113702. PMID 22128979 DOI: 10.1063/1.3657153 |
0.325 |
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| 2011 |
Mlýnský V, Banáš P, Walter NG, Šponer J, Otyepka M. QM/MM studies of hairpin ribozyme self-cleavage suggest the feasibility of multiple competing reaction mechanisms. The Journal of Physical Chemistry. B. 115: 13911-24. PMID 22014231 DOI: 10.1021/Jp206963G |
0.317 |
|
| 2011 |
Johnson-Buck AE, McDowell SE, Walter NG. Metal ions: supporting actors in the playbook of small ribozymes. Metal Ions in Life Sciences. 9: 175-96. PMID 22010272 DOI: 10.1039/9781849732512-00175 |
0.748 |
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| 2011 |
Hoerter JA, Krishnan V, Lionberger TA, Walter NG. siRNA-like double-stranded RNAs are specifically protected against degradation in human cell extract. Plos One. 6: e20359. PMID 21647381 DOI: 10.1371/Journal.Pone.0020359 |
0.772 |
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| 2011 |
Marek MS, Johnson-Buck A, Walter NG. The shape-shifting quasispecies of RNA: one sequence, many functional folds. Physical Chemistry Chemical Physics : Pccp. 13: 11524-37. PMID 21603685 DOI: 10.1039/C1Cp20576E |
0.519 |
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| 2011 |
Spano MN, Walter NG. Solution structure of an alternate conformation of helix27 from Escherichia coli16S rRNA. Biopolymers. 95: 653-68. PMID 21442607 DOI: 10.1002/Bip.21626 |
0.742 |
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| 2011 |
Feng J, Walter NG, Brooks CL. Cooperative and directional folding of the preQ1 riboswitch aptamer domain. Journal of the American Chemical Society. 133: 4196-9. PMID 21375305 DOI: 10.1021/Ja110411M |
0.443 |
|
| 2011 |
Rawlings RA, Krishnan V, Walter NG. Viral RNAi suppressor reversibly binds siRNA to outcompete Dicer and RISC via multiple turnover. Journal of Molecular Biology. 408: 262-76. PMID 21354178 DOI: 10.1016/J.Jmb.2011.02.038 |
0.828 |
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| 2011 |
Cline E, Li M, Yu S, Jung S, Ki Choi S, Kaul N, Meyhofer E, Kotov NA, Baker JR, Guo LJ, Larson RG, Walter NG. Developing a Synthetic Mimic of Promoter Searching by RNA Polymerase Biophysical Journal. 100: 74a. DOI: 10.1016/J.Bpj.2010.12.606 |
0.367 |
|
| 2011 |
Sripathi K, Banáš P, Šponer J, Otyepka M, Walter N. Structural Landmarks of the Hepatitis Delta Virus (HDV) Ribozyme Biophysical Journal. 100: 236a. DOI: 10.1016/J.Bpj.2010.12.1504 |
0.427 |
|
| 2011 |
Michelotti N, Triplett LD, Johnson-Buck A, Manzo AJ, Nangreave J, Taylor S, Stojanovic MN, Yan H, Walter NG. Imaging an Expanding Molecular Robot World Using Super-Accuracy Single-Molecule Fluorescence Microscopy Biophysical Journal. 100: 153a-154a. DOI: 10.1016/J.Bpj.2010.12.1050 |
0.355 |
|
| 2010 |
McDowell SE, Jun JM, Walter NG. Long-range tertiary interactions in single hammerhead ribozymes bias motional sampling toward catalytically active conformations. Rna (New York, N.Y.). 16: 2414-26. PMID 20921269 DOI: 10.1261/Rna.1829110 |
0.762 |
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| 2010 |
Pereira MJ, Behera V, Walter NG. Nondenaturing purification of co-transcriptionally folded RNA avoids common folding heterogeneity. Plos One. 5: e12953. PMID 20886091 DOI: 10.1371/Journal.Pone.0012953 |
0.701 |
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| 2010 |
Michelotti N, de Silva C, Johnson-Buck AE, Manzo AJ, Walter NG. A bird's eye view tracking slow nanometer-scale movements of single molecular nano-assemblies. Methods in Enzymology. 475: 121-48. PMID 20627156 DOI: 10.1016/S0076-6879(10)75006-0 |
0.612 |
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| 2010 |
Walter NG. Single-molecule tools. Methods in Enzymology. 475: xxi-xxii. PMID 20627150 DOI: 10.1016/S0076-6879(10)75027-8 |
0.303 |
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| 2010 |
Blanco M, Walter NG. Analysis of complex single-molecule FRET time trajectories. Methods in Enzymology. 472: 153-78. PMID 20580964 DOI: 10.1016/S0076-6879(10)72011-5 |
0.446 |
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| 2010 |
Walter NG. Single molecule tools: fluorescence based approaches, part A. Preface. Methods in Enzymology. 472: xxi-xxii. PMID 20580955 DOI: 10.1016/S0076-6879(10)72028-0 |
0.322 |
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| 2010 |
Banás P, Walter NG, Sponer J, Otyepka M. Protonation states of the key active site residues and structural dynamics of the glmS riboswitch as revealed by molecular dynamics. The Journal of Physical Chemistry. B. 114: 8701-12. PMID 20536206 DOI: 10.1021/Jp9109699 |
0.417 |
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| 2010 |
Hsieh J, Koutmou KS, Rueda D, Koutmos M, Walter NG, Fierke CA. A divalent cation stabilizes the active conformation of the B. subtilis RNase P x pre-tRNA complex: a role for an inner-sphere metal ion in RNase P. Journal of Molecular Biology. 400: 38-51. PMID 20434461 DOI: 10.1016/J.Jmb.2010.04.050 |
0.627 |
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| 2010 |
Mlýnský V, Banás P, Hollas D, Réblová K, Walter NG, Sponer J, Otyepka M. Extensive molecular dynamics simulations showing that canonical G8 and protonated A38H+ forms are most consistent with crystal structures of hairpin ribozyme. The Journal of Physical Chemistry. B. 114: 6642-52. PMID 20420375 DOI: 10.1021/Jp1001258 |
0.435 |
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| 2010 |
Abelson J, Blanco M, Ditzler MA, Fuller F, Aravamudhan P, Wood M, Villa T, Ryan DE, Pleiss JA, Maeder C, Guthrie C, Walter NG. Conformational dynamics of single pre-mRNA molecules during in vitro splicing. Nature Structural & Molecular Biology. 17: 504-12. PMID 20305654 DOI: 10.1038/Nsmb.1767 |
0.787 |
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| 2010 |
Ditzler MA, Otyepka M, Sponer J, Walter NG. Molecular dynamics and quantum mechanics of RNA: conformational and chemical change we can believe in. Accounts of Chemical Research. 43: 40-7. PMID 19754142 DOI: 10.1021/Ar900093G |
0.781 |
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| 2010 |
Lambert MN, Vöcker E, Blumbere S, Redemann S, Gajraj A, Meiners JC, Walter NG. Erratum: Mg2+-induced compaction of single RNA molecules monitored by tethered particle microscopy (Biophysical Journal (2006) 90 (3672-3685)) Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2010.04.020 |
0.401 |
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| 2010 |
Manzo AJ, de Silva C, Michelotti N, Johnson-Buck A, Taylor SK, Pei R, Lund K, Nangreave J, Yan H, Stojanovic MN, Walter NG. Real-Time Super-Resolution Tracking of Single Deoxyribozyme Based Molecular Robots Biophysical Journal. 98: 590a. DOI: 10.1016/J.Bpj.2009.12.3209 |
0.311 |
|
| 2010 |
Michelotti N, Manzo AJ, Johnson-Buck A, Lund K, Nangreave J, Dabby N, Taylor S, Pei R, Stojanovic MN, Winfree E, Yan H, Walter NG. Single-Molecule Tracking of Nanorobots on Pseudo-One-Dimensional DNA Origami Tracks Biophysical Journal. 98: 590a. DOI: 10.1016/J.Bpj.2009.12.3206 |
0.352 |
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| 2010 |
Walter NG. Stepping under the single molecule microscope: The faster the better Biopolymers. 93: iii-iv. DOI: 10.1002/Bip.21330 |
0.313 |
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| 2009 |
Walter NG. The blessing and curse of RNA dynamics: past, present, and future. Methods (San Diego, Calif.). 49: 85-6. PMID 19782935 DOI: 10.1016/J.Ymeth.2009.09.002 |
0.445 |
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| 2009 |
Kuszak AJ, Pitchiaya S, Anand JP, Mosberg HI, Walter NG, Sunahara RK. Purification and functional reconstitution of monomeric mu-opioid receptors: allosteric modulation of agonist binding by Gi2. The Journal of Biological Chemistry. 284: 26732-41. PMID 19542234 DOI: 10.1074/Jbc.M109.026922 |
0.691 |
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| 2009 |
Gérczei T, Shah BN, Manzo AJ, Walter NG, Correll CC. RNA chaperones stimulate formation and yield of the U3 snoRNA-Pre-rRNA duplexes needed for eukaryotic ribosome biogenesis. Journal of Molecular Biology. 390: 991-1006. PMID 19482034 DOI: 10.1016/J.Jmb.2009.05.072 |
0.487 |
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| 2009 |
Banás P, Jurecka P, Walter NG, Sponer J, Otyepka M. Theoretical studies of RNA catalysis: hybrid QM/MM methods and their comparison with MD and QM. Methods (San Diego, Calif.). 49: 202-16. PMID 19398008 DOI: 10.1016/J.Ymeth.2009.04.007 |
0.447 |
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| 2009 |
Ditzler MA, Sponer J, Walter NG. Molecular dynamics suggest multifunctionality of an adenine imino group in acid-base catalysis of the hairpin ribozyme. Rna (New York, N.Y.). 15: 560-75. PMID 19223444 DOI: 10.1261/Rna.1416709 |
0.75 |
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| 2009 |
de Silva C, Walter NG. Leakage and slow allostery limit performance of single drug-sensing aptazyme molecules based on the hammerhead ribozyme. Rna (New York, N.Y.). 15: 76-84. PMID 19029309 DOI: 10.1261/Rna.1346609 |
0.689 |
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| 2008 |
Ditzler MA, Rueda D, Mo J, Håkansson K, Walter NG. A rugged free energy landscape separates multiple functional RNA folds throughout denaturation. Nucleic Acids Research. 36: 7088-99. PMID 18988629 DOI: 10.1093/Nar/Gkn871 |
0.83 |
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| 2008 |
Furchak JR, Yang P, Jennings C, Walter NG, Kennedy RT. Assay for glucosamine 6-phosphate using a ligand-activated ribozyme with fluorescence resonance energy transfer or CE-laser-induced fluorescence detection. Analytical Chemistry. 80: 8195-201. PMID 18842060 DOI: 10.1021/Ac801410K |
0.362 |
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| 2008 |
Banás P, Rulísek L, Hánosová V, Svozil D, Walter NG, Sponer J, Otyepka M. General base catalysis for cleavage by the active-site cytosine of the hepatitis delta virus ribozyme: QM/MM calculations establish chemical feasibility. The Journal of Physical Chemistry. B. 112: 11177-87. PMID 18686993 DOI: 10.1021/Jp802592Z |
0.403 |
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| 2008 |
Pereira MJ, Nikolova EN, Hiley SL, Jaikaran D, Collins RA, Walter NG. Single VS ribozyme molecules reveal dynamic and hierarchical folding toward catalysis. Journal of Molecular Biology. 382: 496-509. PMID 18656481 DOI: 10.1016/J.Jmb.2008.07.020 |
0.715 |
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| 2008 |
Al-Hashimi HM, Walter NG. RNA dynamics: it is about time. Current Opinion in Structural Biology. 18: 321-9. PMID 18547802 DOI: 10.1016/J.Sbi.2008.04.004 |
0.499 |
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| 2008 |
Walter NG, Huang CY, Manzo AJ, Sobhy MA. Do-it-yourself guide: how to use the modern single-molecule toolkit. Nature Methods. 5: 475-89. PMID 18511916 DOI: 10.1038/Nmeth.1215 |
0.335 |
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| 2008 |
Harris DA, Walter NG. Terbium(III) Footprinting as a Probe of RNA Structure and Metal-binding Sites Handbook of Rna Biochemistry. 205-213. DOI: 10.1002/9783527619504.ch12 |
0.629 |
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| 2007 |
Walter NG. Ribozyme catalysis revisited: is water involved? Molecular Cell. 28: 923-9. PMID 18158891 DOI: 10.1016/J.Molcel.2007.12.001 |
0.423 |
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| 2007 |
Hoerter JA, Walter NG. Chemical modification resolves the asymmetry of siRNA strand degradation in human blood serum. Rna (New York, N.Y.). 13: 1887-93. PMID 17804643 DOI: 10.1261/Rna.602307 |
0.747 |
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| 2007 |
Ditzler MA, Alemán EA, Rueda D, Walter NG. Focus on function: single molecule RNA enzymology. Biopolymers. 87: 302-16. PMID 17685395 DOI: 10.1002/Bip.20819 |
0.833 |
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| 2007 |
Tinsley RA, Walter NG. Long-range impact of peripheral joining elements on structure and function of the hepatitis delta virus ribozyme. Biological Chemistry. 388: 705-15. PMID 17570823 DOI: 10.1515/Bc.2007.088 |
0.823 |
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| 2007 |
Bobeck MJ, Rueda D, Walter NG, Glick GD. Structural modeling of sequence specificity by an autoantibody against single-stranded DNA. Biochemistry. 46: 6753-65. PMID 17503778 DOI: 10.1021/Bi700212S |
0.561 |
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| 2007 |
Liu S, Bokinsky G, Walter NG, Zhuang X. Dissecting the multistep reaction pathway of an RNA enzyme by single-molecule kinetic "fingerprinting". Proceedings of the National Academy of Sciences of the United States of America. 104: 12634-9. PMID 17496145 DOI: 10.1073/Pnas.0610597104 |
0.373 |
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| 2007 |
Sefcikova J, Krasovska MV, Sponer J, Walter NG. The genomic HDV ribozyme utilizes a previously unnoticed U-turn motif to accomplish fast site-specific catalysis. Nucleic Acids Research. 35: 1933-46. PMID 17337436 DOI: 10.1093/Nar/Gkl1104 |
0.806 |
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| 2007 |
Tinsley RA, Furchak JR, Walter NG. Trans-acting glmS catalytic riboswitch: locked and loaded. Rna (New York, N.Y.). 13: 468-77. PMID 17283212 DOI: 10.1261/Rna.341807 |
0.842 |
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| 2007 |
Sefcikova J, Krasovska MV, Spacková N, Sponer J, Walter NG. Impact of an extruded nucleotide on cleavage activity and dynamic catalytic core conformation of the hepatitis delta virus ribozyme. Biopolymers. 85: 392-406. PMID 17253610 DOI: 10.1002/Bip.20693 |
0.795 |
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| 2007 |
Walter NG. Future of biomedical sciences: single molecule microscopy. Biopolymers. 85: 103-5. PMID 17111397 DOI: 10.1002/Bip.20633 |
0.312 |
|
| 2007 |
McDowell SE, Spacková N, Sponer J, Walter NG. Molecular dynamics simulations of RNA: an in silico single molecule approach. Biopolymers. 85: 169-84. PMID 17080418 DOI: 10.1002/Bip.20620 |
0.77 |
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| 2006 |
Rhodes MM, Réblová K, Sponer J, Walter NG. Trapped water molecules are essential to structural dynamics and function of a ribozyme. Proceedings of the National Academy of Sciences of the United States of America. 103: 13380-5. PMID 16938834 DOI: 10.1073/Pnas.0605090103 |
0.711 |
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| 2006 |
Rueda D, Walter NG. Fluorescent energy transfer readout of an aptazyme-based biosensor. Methods in Molecular Biology (Clifton, N.J.). 335: 289-310. PMID 16785635 DOI: 10.1385/1-59745-069-3:289 |
0.648 |
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| 2006 |
Gondert ME, Tinsley RA, Rueda D, Walter NG. Catalytic core structure of the trans-acting HDV ribozyme is subtly influenced by sequence variation outside the core. Biochemistry. 45: 7563-73. PMID 16768452 DOI: 10.1021/Bi052116J |
0.83 |
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| 2006 |
Krasovska MV, Sefcikova J, Réblová K, Schneider B, Walter NG, Sponer J. Cations and hydration in catalytic RNA: molecular dynamics of the hepatitis delta virus ribozyme. Biophysical Journal. 91: 626-38. PMID 16617077 DOI: 10.1529/Biophysj.105.079368 |
0.822 |
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| 2006 |
Newby Lambert M, Vöcker E, Blumberg S, Redemann S, Gajraj A, Meiners JC, Walter NG. Mg2+-induced compaction of single RNA molecules monitored by tethered particle microscopy. Biophysical Journal. 90: 3672-85. PMID 16500956 DOI: 10.1529/Biophysj.105.067793 |
0.465 |
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| 2006 |
Tinsley RA, Walter NG. Pyrrolo-C as a fluorescent probe for monitoring RNA secondary structure formation. Rna (New York, N.Y.). 12: 522-9. PMID 16431979 DOI: 10.1261/Rna.2165806 |
0.826 |
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| 2006 |
Walter NG. Michaelis-Menten is dead, long live Michaelis-Menten! Nature Chemical Biology. 2: 66-7. PMID 16421583 DOI: 10.1038/Nchembio0206-66 |
0.319 |
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| 2005 |
Rueda D, Walter NG. Single molecule fluorescence control for nanotechnology. Journal of Nanoscience and Nanotechnology. 5: 1990-2000. PMID 16430133 DOI: 10.1166/Jnn.2005.505 |
0.545 |
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| 2005 |
Rueda D, Hsieh J, Day-Storms JJ, Fierke CA, Walter NG. The 5' leader of precursor tRNAAsp bound to the Bacillus subtilis RNase P holoenzyme has an extended conformation. Biochemistry. 44: 16130-9. PMID 16331973 DOI: 10.1021/Bi0519093 |
0.634 |
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| 2005 |
Lambert MN, Hoerter JA, Pereira MJ, Walter NG. Solution probing of metal ion binding by helix 27 from Escherichia coli 16S rRNA. Rna (New York, N.Y.). 11: 1688-700. PMID 16244134 DOI: 10.1261/Rna.2940705 |
0.796 |
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| 2005 |
Krasovska MV, Sefcikova J, Spacková N, Sponer J, Walter NG. Structural dynamics of precursor and product of the RNA enzyme from the hepatitis delta virus as revealed by molecular dynamics simulations. Journal of Molecular Biology. 351: 731-48. PMID 16045932 DOI: 10.1016/J.Jmb.2005.06.016 |
0.805 |
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| 2004 |
Hoerter JA, Lambert MN, Pereira MJ, Walter NG. Dynamics inherent in helix 27 from Escherichia coli 16S ribosomal RNA. Biochemistry. 43: 14624-36. PMID 15544333 DOI: 10.1021/Bi048533Y |
0.81 |
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| 2004 |
Harris DA, Tinsley RA, Walter NG. Terbium-mediated footprinting probes a catalytic conformational switch in the antigenomic hepatitis delta virus ribozyme. Journal of Molecular Biology. 341: 389-403. PMID 15276831 DOI: 10.1016/J.Jmb.2004.05.074 |
0.827 |
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| 2004 |
Tinsley RA, Harris DA, Walter NG. Magnesium dependence of the amplified conformational switch in the trans-acting hepatitis delta virus ribozyme. Biochemistry. 43: 8935-45. PMID 15248751 DOI: 10.1021/Bi049471E |
0.828 |
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| 2004 |
Rueda D, Bokinsky G, Rhodes MM, Rust MJ, Zhuang X, Walter NG. Single-molecule enzymology of RNA: essential functional groups impact catalysis from a distance. Proceedings of the National Academy of Sciences of the United States of America. 101: 10066-71. PMID 15218105 DOI: 10.1073/Pnas.0403575101 |
0.801 |
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| 2003 |
Harris DA, Walter NG. Probing RNA structure and metal-binding sites using terbium(III) footprinting. Current Protocols in Nucleic Acid Chemistry / Edited by Serge L. Beaucage ... [Et Al.]. Unit 6.8. PMID 18428913 DOI: 10.1002/0471142700.Nc0608S13 |
0.688 |
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| 2003 |
Walter NG. Probing RNA structural dynamics and function by fluorescence resonance energy transfer (FRET). Current Protocols in Nucleic Acid Chemistry / Edited by Serge L. Beaucage ... [Et Al.]. Unit 11.10. PMID 18428904 DOI: 10.1002/0471142700.Nc1110S11 |
0.518 |
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| 2003 |
Uhler SA, Cai D, Man Y, Figge C, Walter NG. RNA degradation in cell extracts: real-time monitoring by fluorescence resonance energy transfer. Journal of the American Chemical Society. 125: 14230-1. PMID 14624543 DOI: 10.1021/Ja036854B |
0.469 |
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| 2003 |
Tinsley RA, Harris DA, Walter NG. Significant kinetic solvent isotope effects in folding of the catalytic RNA from the hepatitis delta virus. Journal of the American Chemical Society. 125: 13972-3. PMID 14611229 DOI: 10.1021/Ja037870B |
0.824 |
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| 2003 |
Rueda D, Wick K, McDowell SE, Walter NG. Diffusely bound Mg2+ ions slightly reorient stems I and II of the hammerhead ribozyme to increase the probability of formation of the catalytic core. Biochemistry. 42: 9924-36. PMID 12924941 DOI: 10.1021/Bi0347757 |
0.75 |
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| 2003 |
Bokinsky G, Rueda D, Misra VK, Rhodes MM, Gordus A, Babcock HP, Walter NG, Zhuang X. Single-molecule transition-state analysis of RNA folding. Proceedings of the National Academy of Sciences of the United States of America. 100: 9302-7. PMID 12869691 DOI: 10.1073/Pnas.1133280100 |
0.786 |
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| 2003 |
Jeong S, Sefcikova J, Tinsley RA, Rueda D, Walter NG. Trans-acting hepatitis delta virus ribozyme: catalytic core and global structure are dependent on the 5' substrate sequence. Biochemistry. 42: 7727-40. PMID 12820882 DOI: 10.1021/Bi034627G |
0.823 |
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| 2002 |
Sekella PT, Rueda D, Walter NG. A biosensor for theophylline based on fluorescence detection of ligand-induced hammerhead ribozyme cleavage. Rna (New York, N.Y.). 8: 1242-52. PMID 12403463 DOI: 10.1017/S1355838202028066 |
0.636 |
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| 2002 |
Harris DA, Rueda D, Walter NG. Local conformational changes in the catalytic core of the trans-acting hepatitis delta virus ribozyme accompany catalysis. Biochemistry. 41: 12051-61. PMID 12356305 DOI: 10.1021/Bi026101M |
0.761 |
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| 2002 |
Zhuang X, Kim H, Pereira MJ, Babcock HP, Walter NG, Chu S. Correlating structural dynamics and function in single ribozyme molecules. Science (New York, N.Y.). 296: 1473-6. PMID 12029135 DOI: 10.1126/Science.1069013 |
0.693 |
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| 2002 |
Pereira MJ, Harris DA, Rueda D, Walter NG. Reaction pathway of the trans-acting hepatitis delta virus ribozyme: a conformational change accompanies catalysis. Biochemistry. 41: 730-40. PMID 11790094 DOI: 10.1021/Bi011963T |
0.801 |
|
| 2001 |
Walter NG, Harris DA, Pereira MJ, Rueda D. In the fluorescent spotlight: global and local conformational changes of small catalytic RNAs. Biopolymers. 61: 224-42. PMID 11987183 DOI: 10.1002/Bip.10144 |
0.825 |
|
| 2001 |
Walter NG. Structural dynamics of catalytic RNA highlighted by fluorescence resonance energy transfer. Methods (San Diego, Calif.). 25: 19-30. PMID 11558994 DOI: 10.1006/Meth.2001.1212 |
0.532 |
|
| 2001 |
Todorov TI, de Carmejane O, Walter NG, Morris MD. Capillary electrophoresis of RNA in dilute and semidilute polymer solutions. Electrophoresis. 22: 2442-7. PMID 11519948 DOI: 10.1002/1522-2683(200107)22:12<2442::Aid-Elps2442>3.0.Co;2-9 |
0.36 |
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| 2001 |
Fay MJ, Walter NG, Burke JM. Identification of cis-acting elements involved in 3′-end formation of Saccharomyces cerevisiae 18S rRNA Rna. 7: 896-903. PMID 11421364 DOI: 10.1017/S1355838201010196 |
0.418 |
|
| 2001 |
Fay MJ, Walter NG, Burke JM. Imaging of single hairpin ribozymes in solution by atomic force microscopy. Rna (New York, N.Y.). 7: 887-95. PMID 11421363 DOI: 10.1017/S1355838201002473 |
0.623 |
|
| 2001 |
Walter NG, Chan PA, Hampel KJ, Millar DP, Burke JM. A base change in the catalytic core of the hairpin ribozyme perturbs function but not domain docking. Biochemistry. 40: 2580-7. PMID 11327881 DOI: 10.1021/Bi001609F |
0.815 |
|
| 2001 |
Pinard R, Lambert D, Heckman JE, Esteban JA, Gundlach CW, Hampel KJ, Glick GD, Walter NG, Major F, Burke JM. The hairpin ribozyme substrate binding-domain: a highly constrained D-shaped conformation. Journal of Molecular Biology. 307: 51-65. PMID 11243803 DOI: 10.1006/Jmbi.2000.4472 |
0.782 |
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| 2000 |
Walter NG, Burke JM. Fluorescence assays to study structure, dynamics, and function of RNA and RNA-ligand complexes. Methods in Enzymology. 317: 409-40. PMID 10829293 DOI: 10.1016/S0076-6879(00)17027-2 |
0.64 |
|
| 2000 |
Walter NG, Yang N, Burke JM. Probing non-selective cation binding in the hairpin ribozyme with Tb(III). Journal of Molecular Biology. 298: 539-55. PMID 10772868 DOI: 10.1006/Jmbi.2000.3691 |
0.607 |
|
| 1999 |
Pinard R, Lambert D, Walter NG, Heckman JE, Major F, Burke JM. Structural basis for the guanosine requirement of the hairpin ribozyme. Biochemistry. 38: 16035-9. PMID 10587425 DOI: 10.1021/Bi992024S |
0.569 |
|
| 1999 |
Porschke D, Burke JM, Walter NG. Global structure and flexibility of hairpin ribozymes with extended terminal helices. Journal of Molecular Biology. 289: 799-813. PMID 10369762 DOI: 10.1006/Jmbi.1999.2777 |
0.604 |
|
| 1999 |
Walter NG, Burke JM, Millar DP. Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction. Nature Structural Biology. 6: 544-9. PMID 10360357 DOI: 10.1038/9316 |
0.582 |
|
| 1998 |
Murray JB, Seyhan AA, Walter NG, Burke JM, Scott WG. The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone. Chemistry & Biology. 5: 587-95. PMID 9818150 DOI: 10.1016/S1074-5521(98)90116-8 |
0.583 |
|
| 1998 |
Hampel KJ, Walter NG, Burke JM. The solvent-protected core of the hairpin ribozyme-substrate complex. Biochemistry. 37: 14672-82. PMID 9778342 DOI: 10.1021/Bi981083N |
0.758 |
|
| 1998 |
Walter NG, Burke JM. The hairpin ribozyme: structure, assembly and catalysis Current Opinion in Chemical Biology. 2: 303. PMID 9667943 |
0.474 |
|
| 1998 |
Walter NG, Burke JM. The hairpin ribozyme: structure, assembly and catalysis. Current Opinion in Chemical Biology. 2: 24-30. PMID 9667918 DOI: 10.1016/S1367-5931(98)80032-X |
0.581 |
|
| 1998 |
Esteban JA, Walter NG, Kotzorek G, Heckman JE, Burke JM. Structural basis for heterogeneous kinetics: reengineering the hairpin ribozyme. Proceedings of the National Academy of Sciences of the United States of America. 95: 6091-6. PMID 9600922 DOI: 10.1073/Pnas.95.11.6091 |
0.627 |
|
| 1998 |
Walter NG, Hampel KJ, Brown KM, Burke JM. Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer. The Embo Journal. 17: 2378-91. PMID 9545249 DOI: 10.1093/Emboj/17.8.2378 |
0.793 |
|
| 1997 |
Preuss R, Dapprich J, Walter NG. Probing RNA-protein interactions using pyrene-labeled oligodeoxynucleotides: Qbeta replicase efficiently binds small RNAs by recognizing pyrimidine residues. Journal of Molecular Biology. 273: 600-13. PMID 9356249 DOI: 10.1006/jmbi.1997.1343 |
0.422 |
|
| 1997 |
Walter NG, Burke JM. Real-time monitoring of hairpin ribozyme kinetics through base-specific quenching of fluorescein-labeled substrates. Rna (New York, N.Y.). 3: 392-404. PMID 9085846 |
0.543 |
|
| 1996 |
Walter NG, Schwille P, Eigen M. Fluorescence correlation analysis of probe diffusion simplifies quantitative pathogen detection by PCR. Proceedings of the National Academy of Sciences of the United States of America. 93: 12805-10. PMID 8917500 DOI: 10.1073/Pnas.93.23.12805 |
0.66 |
|
| 1996 |
Schwille P, Oehlenschläger F, Walter NG. Quantitative hybridization kinetics of DNA probes to RNA in solution followed by diffusional fluorescence correlation analysis. Biochemistry. 35: 10182-93. PMID 8756483 DOI: 10.1021/Bi960517G |
0.612 |
|
| 1995 |
Schober A, Walter NG, Tangen U, Strunk G, Ederhof T, Dapprich J, Eigen M. Multichannel PCR and serial transfer machine as a future tool in evolutionary biotechnology. Biotechniques. 18: 652-61. PMID 7598900 |
0.513 |
|
| 1995 |
Walter NG. Modelling viral evolution in vitro using exo- Klenow polymerase: continuous selection of strand displacement amplified DNA that binds an oligodeoxynucleotide to form a triple-helix. Journal of Molecular Biology. 254: 856-68. PMID 7500356 DOI: 10.1006/Jmbi.1995.0661 |
0.356 |
|
| 1994 |
Walter NG, Strunk G. Strand displacement amplification as an in vitro model for rolling-circle replication: deletion formation and evolution during serial transfer. Proceedings of the National Academy of Sciences of the United States of America. 91: 7937-41. PMID 8058737 DOI: 10.1073/Pnas.91.17.7937 |
0.366 |
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