Martin Gruebele - Publications

Affiliations: 
Chemistry University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
Protein folding, scanning tunneling microscopy, Ultrafast laser spectroscopy
Website:
http://www.chemistry.illinois.edu/faculty/Martin_Gruebele.html

233 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Guin D, Gelman H, Wang Y, Gruebele M. Heat shock-induced chaperoning by Hsp70 is enabled in-cell. Plos One. 14: e0222990. PMID 31557226 DOI: 10.1371/journal.pone.0222990  1
2019 Rickard MM, Zhang Y, Gruebele M, Pogorelov TV. In-Cell Protein-Protein Contacts: Transient Interactions in the Crowd. The Journal of Physical Chemistry Letters. 5667-5673. PMID 31483661 DOI: 10.1021/acs.jpclett.9b01556  0.84
2019 Boob M, Wang Y, Gruebele M. Proteins: 'Boil 'Em, Mash 'Em, Stick 'Em in a Stew'. The Journal of Physical Chemistry. B. PMID 31386813 DOI: 10.1021/acs.jpcb.9b05467  0.6
2019 Guin D, Gruebele M. Weak Chemical Interactions That Drive Protein Evolution: Crowding, Sticking, and Quinary Structure in Folding and Function. Chemical Reviews. PMID 31356058 DOI: 10.1021/acs.chemrev.8b00753  0.68
2019 Chen J, Wang J, Li K, Wang Y, Gruebele M, Ferguson AL, Zimmerman SC. Polymeric "Clickase" Accelerates the Copper Click Reaction of Small Molecules, Proteins, and Cells. Journal of the American Chemical Society. PMID 31124359 DOI: 10.1021/jacs.9b04181  0.6
2019 Guin D, Mittal S, Bozymski B, Shukla D, Gruebele M. Dodine as a Kosmo-Chaotropic Agent. The Journal of Physical Chemistry Letters. PMID 31026167 DOI: 10.1021/acs.jpclett.9b00379  0.68
2019 Perlova T, Gruebele M, Chemla YR. Blue light is a universal signal for chemoreceptors. Journal of Bacteriology. PMID 30858302 DOI: 10.1128/JB.00762-18  1
2019 Prigozhin MB, Zhang Y, Schulten K, Gruebele M, Pogorelov TV. Fast pressure-jump all-atom simulations and experiments reveal site-specific protein dehydration-folding dynamics. Proceedings of the National Academy of Sciences of the United States of America. PMID 30837309 DOI: 10.1073/pnas.1814927116  1
2019 Nguyen D, Wallum A, Nguyen HA, Nguyen NT, Lyding JW, Gruebele M. Imaging of Carbon Nanotube Electronic States Polarized by the Field of an Excited Quantum Dot. Acs Nano. PMID 30605600 DOI: 10.1021/acsnano.8b06806  0.8
2018 Yang Z, Loh KY, Chu YT, Feng R, Satyavolu NSR, Xiong M, Huynh SMN, Hwang K, Li L, Xing H, Zhang X, Chemla YR, Gruebele M, Lu Y. Optical control of metal ion probes in cells and zebrafish using highly selective DNAzymes conjugated to upconversion nanoparticles. Journal of the American Chemical Society. PMID 30427666 DOI: 10.1021/jacs.8b09867  0.84
2018 Wang Y, Sukenik S, Davis CM, Gruebele M. Cell Volume Controls Protein Stability and Compactness of the Unfolded State. The Journal of Physical Chemistry. B. PMID 30289261 DOI: 10.1021/acs.jpcb.8b08216  0.6
2018 Kisley L, Serrano KA, Davis CM, Guin D, Murphy E, Gruebele M, Leckband DE. Soluble Zwitterionic Poly(sulfobetaine) Destabilizes Proteins. Biomacromolecules. PMID 30064224 DOI: 10.1021/acs.biomac.8b01120  0.68
2018 Sukenik S, Salam M, Wang Y, Gruebele M. In-cell titration of small solutes controls protein stability and aggregation. Journal of the American Chemical Society. PMID 30044620 DOI: 10.1021/jacs.8b04809  0.6
2018 Nguyen HA, Banerjee P, Nguyen D, Lyding JW, Gruebele M, Jain PK. STM Imaging of Localized Surface Plasmons on Individual Gold Nanoislands. The Journal of Physical Chemistry Letters. PMID 29609463 DOI: 10.1021/acs.jpclett.8b00502  0.8
2018 Chen T, Dave K, Gruebele M. Pressure- and heat-induced protein unfolding in bacterial cells: crowding vs. sticking. Febs Letters. PMID 29520756 DOI: 10.1002/1873-3468.13025  0.96
2018 Nguyen D, Goings JJ, Nguyen HA, Lyding J, Li X, Gruebele M. Orientation-dependent imaging of electronically excited quantum dots. The Journal of Chemical Physics. 148: 064701. PMID 29448801 DOI: 10.1063/1.5012784  0.8
2017 Davis CM, Gruebele M, Sukenik S. How does solvation in the cell affect protein folding and binding? Current Opinion in Structural Biology. 48: 23-29. PMID 29035742 DOI: 10.1016/j.sbi.2017.09.003  0.52
2017 Ghaemi Z, Guzman I, Gnutt D, Luthey-Schulten Z, Gruebele M. Role of Electrostatics in Protein-RNA Binding: The Global vs. the Local Energy Landscape. The Journal of Physical Chemistry. B. PMID 28806086 DOI: 10.1021/acs.jpcb.7b04318  0.44
2017 Chao SH, Schaefer J, Gruebele M. The Surface of Protein λ6-85 Can Act as a Template for Recurring PEG Structure. Biochemistry. PMID 28714684 DOI: 10.1021/acs.biochem.7b00215  0.68
2017 Sukenik S, Ren P, Gruebele M. Weak protein-protein interactions in live cells are quantified by cell-volume modulation. Proceedings of the National Academy of Sciences of the United States of America. PMID 28607089 DOI: 10.1073/pnas.1700818114  0.52
2017 Kisley L, Serrano KA, Guin D, Kong X, Gruebele M, Leckband DE. Direct Imaging of Protein Stability and Folding Kinetics in Hydrogels. Acs Applied Materials & Interfaces. PMID 28553706 DOI: 10.1021/acsami.7b01371  0.68
2017 Nguyen DA, Nguyen HA, Lyding JW, Gruebele M. Imaging and Manipulating Energy Transfer Among Quantum Dots at Individual Dot Resolution. Acs Nano. PMID 28525955 DOI: 10.1021/acsnano.7b02649  0.8
2016 Kocherginsky N, Gruebele M. Mechanical approach to chemical transport. Proceedings of the National Academy of Sciences of the United States of America. PMID 27647899 DOI: 10.1073/pnas.1600866113  0.32
2016 Kachlishvili K, Dave K, Gruebele M, Scheraga HA, Maisuradze GG. Eliminating a Protein Folding Intermediate by Tuning a Local Hydrophobic Contact. The Journal of Physical Chemistry. B. PMID 27584585 DOI: 10.1021/acs.jpcb.6b07250  0.96
2016 Ghaemi Z, Guzman I, Baek JJ, Gruebele M, Luthey-Schulten Z. Estimation of Relative Protein-RNA Binding Strengths from Fluctuations in the Bound State. Journal of Chemical Theory and Computation. PMID 27529183 DOI: 10.1021/acs.jctc.6b00418  1
2016 Gruebele M, Dave K, Sukenik S. Globular Protein Folding In Vitro and In Vivo. Annual Review of Biophysics. 45: 233-51. PMID 27391927 DOI: 10.1146/annurev-biophys-062215-011236  0.96
2016 Nguyen D, Zhu ZG, Pringle B, Lyding J, Wang WH, Gruebele M. Composition-dependent metallic glass alloys correlate atomic mobility with collective glass surface dynamics. Physical Chemistry Chemical Physics : Pccp. PMID 27283239 DOI: 10.1039/c6cp02654k  0.8
2016 Tai J, Dave K, Hahn V, Guzman I, Gruebele M. Sub-cellular modulation of protein VlsE stability and folding kinetics. Febs Letters. PMID 27129718 DOI: 10.1002/1873-3468.12193  0.96
2016 Zhang Y, Schulten K, Gruebele M, Bansal PS, Wilson D, Daly NL. Disulfide Bridges: Bringing Together Frustrated Structure in a Bioactive Peptide. Biophysical Journal. 110: 1744-1752. PMID 27119635 DOI: 10.1016/j.bpj.2016.03.027  0.6
2016 Sukenik S, Pogorelov TV, Gruebele M. Can Local Probes Go Global? A Joint Experiment-Simulation Analysis of λ6-85 Folding. The Journal of Physical Chemistry Letters. PMID 27101436 DOI: 10.1021/acs.jpclett.6b00582  0.84
2016 Davtyan A, Platkov M, Gruebele M, Papoian GA. Stochastic Resonance in Protein Folding Dynamics. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 26992148 DOI: 10.1002/cphc.201501125  1
2016 Gelman H, Wirth AJ, Gruebele M. ReAsH as a quantitative probe of in-cell protein dynamics. Biochemistry. PMID 26959408 DOI: 10.1021/acs.biochem.5b01336  1
2016 Guin D, Sye K, Dave K, Gruebele M. Dodine as a transparent protein denaturant for circular dichroism and infrared studies. Protein Science : a Publication of the Protein Society. PMID 26941080 DOI: 10.1002/pro.2914  0.96
2016 Dave K, Gelman H, Chu HT, Guin D, Gruebele M. The Effect of Fluorescent Protein Tags on Phosphoglycerate Kinase Stability Is Non-Additive. The Journal of Physical Chemistry. B. PMID 26923443 DOI: 10.1021/acs.jpcb.5b11915  1
2016 Dave K, Jäger M, Nguyen H, Kelly JW, Gruebele M. High-resolution mapping of the folding transition state of a WW domain. Journal of Molecular Biology. PMID 26880334 DOI: 10.1016/j.jmb.2016.02.008  0.96
2015 Gruebele M, Dave K, Davtyan A, Papoian GA, Platkov M. Environmental fluctuations and stochastic resonance in protein folding. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 26711088 DOI: 10.1002/cphc.201501041  1
2015 Nienhaus L, Goings JJ, Nguyen D, Wieghold S, Lyding JW, Li X, Gruebele M. Imaging Excited Orbitals of Quantum Dots: Experiment and Electronic Structure Theory. Journal of the American Chemical Society. PMID 26518039 DOI: 10.1021/jacs.5b09272  1
2015 Nienhaus L, Wieghold S, Nguyen D, Lyding JW, Scott GE, Gruebele M. Optoelectronic Switching of a Carbon Nanotube Chiral Junction Imaged with Nanometer Spatial Resolution. Acs Nano. PMID 26348682 DOI: 10.1021/acsnano.5b04872  1
2015 Dave K, Gruebele M. Fast-folding proteins under stress. Cellular and Molecular Life Sciences : Cmls. 72: 4273-85. PMID 26231095 DOI: 10.1007/s00018-015-2002-3  1
2015 Girdhar K, Gruebele M, Chemla YR. The Behavioral Space of Zebrafish Locomotion and Its Neural Network Analog. Plos One. 10: e0128668. PMID 26132396 DOI: 10.1371/journal.pone.0128668  1
2015 Nguyen D, Nienhaus L, Haasch RT, Lyding J, Gruebele M. Sub-nanometer glass surface dynamics induced by illumination. The Journal of Chemical Physics. 142: 234505. PMID 26093566 DOI: 10.1063/1.4922695  1
2015 Prigozhin MB, Chao SH, Sukenik S, Pogorelov TV, Gruebele M. Mapping fast protein folding with multiple-site fluorescent probes. Proceedings of the National Academy of Sciences of the United States of America. 112: 7966-71. PMID 26080403 DOI: 10.1073/pnas.1422683112  1
2015 Wirth AJ, Liu Y, Prigozhin MB, Schulten K, Gruebele M. Comparing Fast Pressure Jump and Temperature Jump Protein Folding Experiments and Simulations. Journal of the American Chemical Society. 137: 7152-9. PMID 25988868 DOI: 10.1021/jacs.5b02474  1
2015 Guzman I, Ghaemi Z, Baranger A, Luthey-Schulten Z, Gruebele M. Native conformational dynamics of the spliceosomal U1A protein. The Journal of Physical Chemistry. B. 119: 3651-61. PMID 25659967 DOI: 10.1021/jp511760m  1
2015 Boppart SA, King MD, Liu Y, Tu H, Gruebele M. Nonlinear interferometric vibrational imaging (NIVI) with novel optical sources Optical Coherence Tomography: Technology and Applications, Second Edition. 1237-1256. DOI: 10.1007/978-3-319-06419-2_39  1
2014 Shyshlov D, Berrios E, Gruebele M, Babikov D. On readout of vibrational qubits using quantum beats. The Journal of Chemical Physics. 141: 224306. PMID 25494748 DOI: 10.1063/1.4903055  1
2014 Gruebele M. Protein dynamics in simulation and experiment. Journal of the American Chemical Society. 136: 16695-7. PMID 25465034 DOI: 10.1021/ja510614s  1
2014 Guo M, Gelman H, Gruebele M. Coupled protein diffusion and folding in the cell. Plos One. 9: e113040. PMID 25436502 DOI: 10.1371/journal.pone.0113040  1
2014 Nguyen D, Mallek J, Cloud AN, Abelson JR, Girolami GS, Lyding J, Gruebele M. The energy landscape of glassy dynamics on the amorphous hafnium diboride surface. The Journal of Chemical Physics. 141: 204501. PMID 25429948 DOI: 10.1063/1.4901132  1
2014 Platkov M, Gruebele M. Periodic and stochastic thermal modulation of protein folding kinetics. The Journal of Chemical Physics. 141: 035103. PMID 25053342 DOI: 10.1063/1.4887360  1
2014 Gruebele M. CARPe diem. Biophysical Journal. 107: 3-4. PMID 24988333 DOI: 10.1016/j.bpj.2014.04.059  1
2014 Guzman I, Gruebele M. Protein folding dynamics in the cell. The Journal of Physical Chemistry. B. 118: 8459-70. PMID 24878167 DOI: 10.1021/jp501866v  1
2014 Chao SH, Matthews SS, Paxman R, Aksimentiev A, Gruebele M, Price JL. Two structural scenarios for protein stabilization by PEG. The Journal of Physical Chemistry. B. 118: 8388-95. PMID 24821319 DOI: 10.1021/jp502234s  1
2014 Gelman H, Gruebele M. Fast protein folding kinetics. Quarterly Reviews of Biophysics. 47: 95-142. PMID 24641816 DOI: 10.1017/S003358351400002X  1
2014 Goodman JS, Chao SH, Pogorelov TV, Gruebele M. Filling up the heme pocket stabilizes apomyoglobin and speeds up its folding. The Journal of Physical Chemistry. B. 118: 6511-8. PMID 24456280 DOI: 10.1021/jp412459z  1
2014 Liu Y, Prigozhin MB, Schulten K, Gruebele M. Observation of complete pressure-jump protein refolding in molecular dynamics simulation and experiment. Journal of the American Chemical Society. 136: 4265-72. PMID 24437525 DOI: 10.1021/ja412639u  1
2014 Guzman I, Gelman H, Tai J, Gruebele M. The extracellular protein VlsE is destabilized inside cells. Journal of Molecular Biology. 426: 11-20. PMID 24013077 DOI: 10.1016/j.jmb.2013.08.024  1
2014 Kuroi K, Okajima K, Ikeuchi M, Tokutomi S, Terazima M, Gruebele M. Transient conformational fluctuation of TePixD during a reaction Proceedings of the National Academy of Sciences of the United States of America. 111: 14764-14769. DOI: 10.1073/pnas.1413222111/-/DCSupplemental  1
2014 Nienhaus L, Scott GE, Haasch RT, Wieghold S, Lyding JW, Gruebele M. Transparent metal films for detection of single-molecule optical absorption by scanning tunneling microscopy Journal of Physical Chemistry C. 118: 13196-13202. DOI: 10.1021/jp501811z  1
2014 Nienhaus L, Gross DE, Xue Z, Moore JS, Gruebele M. Intramolecular energy transfer in a synthetic dendron-based light harvesting system Journal of Photochemistry and Photobiology a: Chemistry. 295: 26-33. DOI: 10.1016/j.jphotochem.2014.08.014  1
2013 Boulos SP, Prigozhin MB, Liu Y, Wirth AJ, Boppart SA, Gruebele M, Murphy CJ. The Gold Nanorod-Biology Interface: From Proteins to Cells to Tissue. Current Physical Chemistry. 3. PMID 24358071 DOI: 10.2174/1877946811303020002  1
2013 Wirth AJ, Platkov M, Gruebele M. Temporal variation of a protein folding energy landscape in the cell. Journal of the American Chemical Society. 135: 19215-21. PMID 24304346 DOI: 10.1021/ja4087165  1
2013 Eaton WA, Gruebele M, Lubchenko V, Onuchic JN. Tribute to Peter G. Wolynes. The Journal of Physical Chemistry. B. 117: 12669-71. PMID 24152073 DOI: 10.1021/jp406995z  1
2013 Gruebele M, Thirumalai D. Perspective: Reaches of chemical physics in biology. The Journal of Chemical Physics. 139: 121701. PMID 24089712 DOI: 10.1063/1.4820139  1
2013 Berrios E, Pratt S, Tripathi P, Gruebele M. More protected vibrational states at the dissociation limit of SCCl2. The Journal of Physical Chemistry. A. 117: 12082-90. PMID 24033374 DOI: 10.1021/jp404834y  1
2013 Wirth AJ, Gruebele M. Quinary protein structure and the consequences of crowding in living cells: leaving the test-tube behind. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 35: 984-93. PMID 23943406 DOI: 10.1002/bies.201300080  1
2013 Gelman H, Perlova T, Gruebele M. Dodine as a protein denaturant: the best of two worlds? The Journal of Physical Chemistry. B. 117: 13090-7. PMID 23906507 DOI: 10.1021/jp4028113  1
2013 Prigozhin MB, Liu Y, Wirth AJ, Kapoor S, Winter R, Schulten K, Gruebele M. Misplaced helix slows down ultrafast pressure-jump protein folding. Proceedings of the National Academy of Sciences of the United States of America. 110: 8087-92. PMID 23620522 DOI: 10.1073/pnas.1219163110  1
2013 Berrios E, Sundaradevan P, Gruebele M. Franck-Condon fingerprinting of vibration-tunneling spectra. The Journal of Physical Chemistry. A. 117: 7535-41. PMID 23586664 DOI: 10.1021/jp401848p  1
2013 Kocherginsky N, Gruebele M. A thermodynamic derivation of the reciprocal relations. The Journal of Chemical Physics. 138: 124502. PMID 23556731 DOI: 10.1063/1.4793258  1
2013 Matsumura Y, Shinjo M, Kim SJ, Okishio N, Gruebele M, Kihara H. Transient helical structure during PI3K and Fyn SH3 domain folding. The Journal of Physical Chemistry. B. 117: 4836-43. PMID 23537292 DOI: 10.1021/jp400167s  1
2013 Prigozhin MB, Gruebele M. Microsecond folding experiments and simulations: a match is made. Physical Chemistry Chemical Physics : Pccp. 15: 3372-88. PMID 23361200 DOI: 10.1039/c3cp43992e  1
2013 Meister K, Ebbinghaus S, Xu Y, Duman JG, DeVries A, Gruebele M, Leitner DM, Havenith M. Long-range protein-water dynamics in hyperactive insect antifreeze proteins. Proceedings of the National Academy of Sciences of the United States of America. 110: 1617-22. PMID 23277543 DOI: 10.1073/pnas.1214911110  1
2012 Denos S, Dhar A, Gruebele M. Crowding effects on the small, fast-folding protein lambda6-85. Faraday Discussions. 157: 451-62; discussion 4. PMID 23230782 DOI: 10.1039/c2fd20009k  1
2012 Ashtekar S, Lyding J, Gruebele M. Temperature-dependent two-state dynamics of individual cooperatively rearranging regions on a glass surface. Physical Review Letters. 109: 166103. PMID 23215096 DOI: 10.1103/PhysRevLett.109.166103  1
2012 Ashtekar S, Nguyen D, Zhao K, Lyding J, Wang WH, Gruebele M. Communication: An obligatory glass surface. The Journal of Chemical Physics. 137: 141102. PMID 23061832 DOI: 10.1063/1.4757975  1
2012 Ebbinghaus S, Meister K, Prigozhin MB, Devries AL, Havenith M, Dzubiella J, Gruebele M. Functional importance of short-range binding and long-range solvent interactions in helical antifreeze peptides. Biophysical Journal. 103: L20-2. PMID 22853917 DOI: 10.1016/j.bpj.2012.06.013  1
2012 Berrios E, Gruebele M, Shyshlov D, Wang L, Babikov D. High fidelity quantum gates with vibrational qubits. The Journal of Physical Chemistry. A. 116: 11347-54. PMID 22803619 DOI: 10.1021/jp3055729  1
2012 Dhar A, Prigozhin M, Gelman H, Gruebele M. Studying IDP stability and dynamics by fast relaxation imaging in living cells. Methods in Molecular Biology (Clifton, N.J.). 895: 101-11. PMID 22760315 DOI: 10.1007/978-1-61779-927-3_8  1
2012 Liu Y, Strümpfer J, Freddolino PL, Gruebele M, Schulten K. Structural Characterization of λ-Repressor Folding from All-Atom Molecular Dynamics Simulations. The Journal of Physical Chemistry Letters. 3: 1117-1123. PMID 22737279 DOI: 10.1021/jz300017c  1
2012 Guo M, Xu Y, Gruebele M. Temperature dependence of protein folding kinetics in living cells. Proceedings of the National Academy of Sciences of the United States of America. 109: 17863-7. PMID 22665776 DOI: 10.1073/pnas.1201797109  1
2012 Gelman H, Platkov M, Gruebele M. Rapid perturbation of free-energy landscapes: from in vitro to in vivo. Chemistry (Weinheim An Der Bergstrasse, Germany). 18: 6420-7. PMID 22517586 DOI: 10.1002/chem.201104047  1
2012 Price JL, Shental-Bechor D, Dhar A, Turner MJ, Powers ET, Gruebele M, Levy Y, Kelly JW. Correction to Context-Dependent Effects of Asparagine Glycosylation on Pin WW Folding Kinetics and Thermodynamics. Journal of the American Chemical Society. 134: 4450-4451. PMID 22500055 DOI: 10.1021/ja300899d  1
2012 Wood JD, Schmucker SW, Haasch RT, Doidge GP, Nienhaus L, Damhorst GL, Lyons AS, Gruebele M, Bashir R, Pop E, Lyding JW. Improved graphene growth and fluorination on Cu with clean transfer to surfaces Proceedings of the Ieee Conference On Nanotechnology. DOI: 10.1109/NANO.2012.6322101  1
2012 Leitner DM, Gruebele M, Havenith-Newen M. THz Technology and THz Spectroscopy: Modeling and Experiments to Study Solvation Dynamics of Biomolecules Methods in Physical Chemistry. 1: 687-710. DOI: 10.1002/9783527636839.ch22  1
2011 Prigozhin MB, Gruebele M. The fast and the slow: folding and trapping of λ6-85. Journal of the American Chemical Society. 133: 19338-41. PMID 22066714 DOI: 10.1021/ja209073z  1
2011 Dhar A, Gruebele M. Fast Relaxation Imaging in living cells. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit28.1. PMID 21842471 DOI: 10.1002/0471140864.ps2801s65  1
2011 Ashtekar S, Scott G, Lyding J, Gruebele M. Direct imaging of two-state dynamics on the amorphous silicon surface. Physical Review Letters. 106: 235501. PMID 21770518 DOI: 10.1103/PhysRevLett.106.235501  1
2011 Dhar A, Girdhar K, Singh D, Gelman H, Ebbinghaus S, Gruebele M. Protein stability and folding kinetics in the nucleus and endoplasmic reticulum of eucaryotic cells. Biophysical Journal. 101: 421-30. PMID 21767495 DOI: 10.1016/j.bpj.2011.05.071  1
2011 Girdhar K, Scott G, Chemla YR, Gruebele M. Better biomolecule thermodynamics from kinetics. The Journal of Chemical Physics. 135: 015102. PMID 21744920 DOI: 10.1063/1.3607605  1
2011 Anunciado D, Dhar A, Gruebele M, Baranger AM. Multistep kinetics of the U1A-SL2 RNA complex dissociation. Journal of Molecular Biology. 408: 896-908. PMID 21419778 DOI: 10.1016/j.jmb.2011.02.054  1
2011 Gruebele M. A triple threat to single molecules. Nature Methods. 8: 213-5. PMID 21358623 DOI: 10.1038/nmeth0311-213  1
2011 Prigozhin MB, Sarkar K, Law D, Swope WC, Gruebele M, Pitera J. Reducing lambda repressor to the core. The Journal of Physical Chemistry. B. 115: 2090-6. PMID 21319829 DOI: 10.1021/jp110175x  1
2011 Culyba EK, Price JL, Hanson SR, Dhar A, Wong CH, Gruebele M, Powers ET, Kelly JW. Protein native-state stabilization by placing aromatic side chains in N-glycosylated reverse turns. Science (New York, N.Y.). 331: 571-5. PMID 21292975 DOI: 10.1126/science.1198461  1
2011 Gruebele M. Two- and higher point correlation functions in proteins. Journal of Biomolecular Structure & Dynamics. 28: 615-6; discussion 66. PMID 21142234 DOI: 10.1080/073911011010524963  1
2011 Piana S, Sarkar K, Lindorff-Larsen K, Guo M, Gruebele M, Shaw DE. Computational design and experimental testing of the fastest-folding β-sheet protein. Journal of Molecular Biology. 405: 43-8. PMID 20974152 DOI: 10.1016/j.jmb.2010.10.023  1
2011 Ebbinghaus S, Gruebele M. Protein folding landscapes in the living cell Journal of Physical Chemistry Letters. 2: 314-319. DOI: 10.1021/jz101729z  1
2011 Walters PL, Prigozhin MB, Takeshita TY, Xu L, Olivarez FM, Gruebele M. Conformational energy gaps and scaling of conformer density in chain molecules Chemical Physics Letters. 507: 15-18. DOI: 10.1016/j.cplett.2011.03.050  1
2010 Chen K, Eargle J, Sarkar K, Gruebele M, Luthey-Schulten Z. Functional role of ribosomal signatures. Biophysical Journal. 99: 3930-40. PMID 21156135 DOI: 10.1016/j.bpj.2010.09.062  1
2010 Gruebele M. Analytical biochemistry: Weighing up protein folding. Nature. 468: 640-1. PMID 21124444 DOI: 10.1038/468640a  1
2010 Chowdary PD, Jiang Z, Chaney EJ, Benalcazar WA, Marks DL, Gruebele M, Boppart SA. Molecular histopathology by spectrally reconstructed nonlinear interferometric vibrational imaging. Cancer Research. 70: 9562-9. PMID 21098699 DOI: 10.1158/0008-5472.CAN-10-1554  1
2010 Scott G, Ashtekar S, Lyding J, Gruebele M. Direct imaging of room temperature optical absorption with subnanometer spatial resolution. Nano Letters. 10: 4897-900. PMID 21058717 DOI: 10.1021/nl102854s  1
2010 Dhar A, Ebbinghaus S, Shen Z, Mishra T, Gruebele M. The diffusion coefficient for PGK folding in eukaryotic cells. Biophysical Journal. 99: L69-71. PMID 21044564 DOI: 10.1016/j.bpj.2010.08.066  1
2010 Sarkar K, Nguyen DA, Gruebele M. Loop and stem dynamics during RNA hairpin folding and unfolding. Rna (New York, N.Y.). 16: 2427-34. PMID 20962040 DOI: 10.1261/rna.2253310  1
2010 Price JL, Shental-Bechor D, Dhar A, Turner MJ, Powers ET, Gruebele M, Levy Y, Kelly JW. Context-dependent effects of asparagine glycosylation on Pin WW folding kinetics and thermodynamics. Journal of the American Chemical Society. 132: 15359-67. PMID 20936810 DOI: 10.1021/ja106896t  1
2010 Dhar A, Samiotakis A, Ebbinghaus S, Nienhaus L, Homouz D, Gruebele M, Cheung MS. Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding. Proceedings of the National Academy of Sciences of the United States of America. 107: 17586-91. PMID 20921368 DOI: 10.1073/pnas.1006760107  1
2010 Gruebele M. Protein folding. Methods (San Diego, Calif.). 52: 1-2. PMID 20816347 DOI: 10.1016/j.ymeth.2010.08.010  1
2010 Ebbinghaus S, Meister K, Born B, DeVries AL, Gruebele M, Havenith M. Antifreeze glycoprotein activity correlates with long-range protein-water dynamics. Journal of the American Chemical Society. 132: 12210-1. PMID 20712311 DOI: 10.1021/ja1051632  1
2010 Scott G, Gruebele M. Solving the low dimensional Smoluchowski equation with a singular value basis set. Journal of Computational Chemistry. 31: 2428-33. PMID 20652986 DOI: 10.1002/jcc.21535  1
2010 Larios E, Gruebele M. Protein stability at negative pressure. Methods (San Diego, Calif.). 52: 51-6. PMID 20433926 DOI: 10.1016/j.ymeth.2010.04.010  1
2010 Chowdary PD, Benalcazar WA, Jiang Z, Marks DM, Boppart SA, Gruebele M. High speed nonlinear interferometric vibrational analysis of lipids by spectral decomposition. Analytical Chemistry. 82: 3812-8. PMID 20373786 DOI: 10.1021/ac100222c  1
2010 Liu F, Maynard C, Scott G, Melnykov A, Hall KB, Gruebele M. A natural missing link between activated and downhill protein folding scenarios. Physical Chemistry Chemical Physics : Pccp. 12: 3542-9. PMID 20336253 DOI: 10.1039/b925033f  1
2010 Denos S, Gotkowski E, Gruebele M. A learning algorithm to discover soluble vesicle-binding helical peptides. The Journal of Physical Chemistry. B. 114: 4909-14. PMID 20232924 DOI: 10.1021/jp912157g  1
2010 Ebbinghaus S, Dhar A, McDonald JD, Gruebele M. Protein folding stability and dynamics imaged in a living cell. Nature Methods. 7: 319-23. PMID 20190760 DOI: 10.1038/nmeth.1435  1
2010 Liu F, Gao YG, Gruebele M. A survey of lambda repressor fragments from two-state to downhill folding. Journal of Molecular Biology. 397: 789-98. PMID 20138892 DOI: 10.1016/j.jmb.2010.01.071  1
2010 Liu F, Gruebele M. Mapping an aggregation nucleus one protein at a time Journal of Physical Chemistry Letters. 1: 16-19. DOI: 10.1021/jz9000856  1
2010 Ashtekar S, Scott G, Lyding J, Gruebele M. Direct visualization of two-state dynamics on metallic glass surfaces well below T g Journal of Physical Chemistry Letters. 1: 1941-1945. DOI: 10.1021/jz100633d  1
2010 Berrios E, Hui HY, Gruebele M. Vibrationally resolved emission of thiophosgene dimer Chemical Physics Letters. 497: 163-167. DOI: 10.1016/j.cplett.2010.08.014  1
2009 Benalcazar WA, Chowdary PD, Jiang Z, Marks DL, Chaney EJ, Gruebele M, Boppart SA. High-Speed Nonlinear Interferometric Vibrational Imaging of Biological Tissue With Comparison to Raman Microscopy. Ieee Journal of Quantum Electronics. 16: 824-832. PMID 22058432 DOI: 10.1109/JSTQE.2009.2035537  1
2009 Liu F, Nakaema M, Gruebele M. The transition state transit time of WW domain folding is controlled by energy landscape roughness. The Journal of Chemical Physics. 131: 195101. PMID 19929078 DOI: 10.1063/1.3262489  1
2009 Gruebele M. How to mark off paths on the protein energy landscape. Proceedings of the National Academy of Sciences of the United States of America. 106: 18879-80. PMID 19889984 DOI: 10.1073/pnas.0910764106  1
2009 Sarkar K, Meister K, Sethi A, Gruebele M. Fast folding of an RNA tetraloop on a rugged energy landscape detected by a stacking-sensitive probe. Biophysical Journal. 97: 1418-27. PMID 19720030 DOI: 10.1016/j.bpj.2009.06.035  1
2009 Chowdary PD, Gruebele M. Molecules: what kind of a bag of atoms? The Journal of Physical Chemistry. A. 113: 13139-43. PMID 19588898 DOI: 10.1021/jp903104p  1
2009 Kim SJ, Matsumura Y, Dumont C, Kihara H, Gruebele M. Slowing down downhill folding: a three-probe study. Biophysical Journal. 97: 295-302. PMID 19580767 DOI: 10.1016/j.bpj.2009.04.041  1
2009 Fuller AA, Du D, Liu F, Davoren JE, Bhabha G, Kroon G, Case DA, Dyson HJ, Powers ET, Wipf P, Gruebele M, Kelly JW. Evaluating beta-turn mimics as beta-sheet folding nucleators. Proceedings of the National Academy of Sciences of the United States of America. 106: 11067-72. PMID 19541614 DOI: 10.1073/pnas.0813012106  1
2009 Dumont C, Emilsson T, Gruebele M. Reaching the protein folding speed limit with large, sub-microsecond pressure jumps. Nature Methods. 6: 515-9. PMID 19483692 DOI: 10.1038/nmeth.1336  1
2009 Gruebele M. Protein dynamics: from molecules, to interactions, to biology. International Journal of Molecular Sciences. 10: 1360-8. PMID 19399253 DOI: 10.3390/ijms10031360  1
2009 Chowdary PD, Gruebele M. An effective Hamiltonian survey of the anharmonic vibrational state space of SCCl2 up to the dissociation energy. The Journal of Chemical Physics. 130: 134310. PMID 19355735 DOI: 10.1063/1.3105989  1
2009 Weidinger D, Engel MF, Gruebele M. Freezing vibrational energy flow: a fitness function for interchangeable computational and experimental control. The Journal of Physical Chemistry. A. 113: 4184-91. PMID 19245213 DOI: 10.1021/jp8106028  1
2009 Born B, Kim SJ, Ebbinghaus S, Gruebele M, Havenith M. The terahertz dance of water with the proteins: the effect of protein flexibility on the dynamical hydration shell of ubiquitin. Faraday Discussions. 141: 161-73; discussion 1. PMID 19227357 DOI: 10.1039/b804734k  1
2009 Liu F, Dumont C, Zhu Y, DeGrado WF, Gai F, Gruebele M. A one-dimensional free energy surface does not account for two-probe folding kinetics of protein alpha(3)D. The Journal of Chemical Physics. 130: 061101. PMID 19222256 DOI: 10.1063/1.3077008  1
2009 Chowdary PD, Gruebele M. Regular vibrational state progressions at the dissociation limit of SCCl2. The Journal of Chemical Physics. 130: 024305. PMID 19154026 DOI: 10.1063/1.3038019  1
2009 Carmichael ES, Gruebele M. Controlling the smoothness of optically transparent gold films by temperature tuning Journal of Physical Chemistry C. 113: 4495-4501. DOI: 10.1021/jp807907x  1
2008 Leitner DM, Gruebele M, Havenith M. Solvation dynamics of biomolecules: modeling and terahertz experiments. Hfsp Journal. 2: 314-23. PMID 19436490 DOI: 10.2976/1.2976661  1
2008 Chowdary PD, Gruebele M. Size and energy scaling of nonstatistical vibrational quantum states. Physical Review Letters. 101: 250603. PMID 19113688 DOI: 10.1103/PhysRevLett.101.250603  1
2008 Jager M, Deechongkit S, Koepf EK, Nguyen H, Gao J, Powers ET, Gruebele M, Kelly JW. Understanding the mechanism of beta-sheet folding from a chemical and biological perspective. Biopolymers. 90: 751-8. PMID 18844292 DOI: 10.1002/bip.21101  1
2008 Kim SJ, Born B, Havenith M, Gruebele M. Real-time detection of protein-water dynamics upon protein folding by terahertz absorption spectroscopy. Angewandte Chemie (International Ed. in English). 47: 6486-9. PMID 18663705 DOI: 10.1002/anie.200802281  1
2008 Freddolino PL, Liu F, Gruebele M, Schulten K. Ten-microsecond molecular dynamics simulation of a fast-folding WW domain. Biophysical Journal. 94: L75-7. PMID 18339748 DOI: 10.1529/biophysj.108.131565  1
2008 Kim SJ, Dumont C, Gruebele M. Simulation-based fitting of protein-protein interaction potentials to SAXS experiments. Biophysical Journal. 94: 4924-31. PMID 18326645 DOI: 10.1529/biophysj.107.123240  1
2008 Liu F, Du D, Fuller AA, Davoren JE, Wipf P, Kelly JW, Gruebele M. An experimental survey of the transition between two-state and downhill protein folding scenarios. Proceedings of the National Academy of Sciences of the United States of America. 105: 2369-74. PMID 18268349 DOI: 10.1073/pnas.0711908105  1
2008 Ebbinghaus S, Kim SJ, Heyden M, Yu X, Gruebele M, Leitner DM, Havenith M. Protein sequence- and pH-dependent hydration probed by terahertz spectroscopy. Journal of the American Chemical Society. 130: 2374-5. PMID 18247605 DOI: 10.1021/ja0746520  1
2008 Gruebele M. Comment on Probe-dependent and nonexponential relaxation kinetics: unreliable signatures of downhill protein folding. Proteins. 70: 1099-102. PMID 18004780 DOI: 10.1002/prot.21789  1
2008 Havenith M, Leitner D, Gruebele M. The THz dance of the protein with the water 33rd International Conference On Infrared and Millimeter Waves and the 16th International Conference On Terahertz Electronics, 2008, Irmmw-Thz 2008. DOI: 10.1109/ICIMW.2008.4665536  1
2008 Leitner DM, Gruebele M. A quantum model of restricted vibrational energy flow on the way to the transition state in unimolecular reactions Molecular Physics. 106: 433-442. DOI: 10.1080/00268970701854789  1
2008 Liu F, Gruebele M. Downhill dynamics and the molecular rate of protein folding Chemical Physics Letters. 461: 1-8. DOI: 10.1016/j.cplett.2008.04.075  1
2008 Weidinger D, Gruebele M. Simulations of quantum computation with a molecular ion Chemical Physics. 350: 139-144. DOI: 10.1016/j.chemphys.2008.01.059  1
2008 Gruebele M. Fast Relaxation Methods Protein Folding Handbook. 1: 454-490. DOI: 10.1002/9783527619498.ch14  1
2007 Ebbinghaus S, Kim SJ, Heyden M, Yu X, Heugen U, Gruebele M, Leitner DM, Havenith M. An extended dynamical hydration shell around proteins. Proceedings of the National Academy of Sciences of the United States of America. 104: 20749-52. PMID 18093918 DOI: 10.1073/pnas.0709207104  1
2007 Gruebele M, Wolynes PG. Quantizing Ulam's control conjecture. Physical Review Letters. 99: 060201. PMID 17930806 DOI: 10.1103/PhysRevLett.99.060201  1
2007 Jäger M, Nguyen H, Dendle M, Gruebele M, Kelly JW. Influence of hPin1 WW N-terminal domain boundaries on function, protein stability, and folding. Protein Science : a Publication of the Protein Society. 16: 1495-501. PMID 17586778 DOI: 10.1110/ps.072775507  1
2007 Liu F, Gruebele M. Tuning lambda6-85 towards downhill folding at its melting temperature. Journal of Molecular Biology. 370: 574-84. PMID 17532338 DOI: 10.1016/j.jmb.2007.04.036  1
2007 Weidinger D, Gruebele M. Quantum computation with vibrationally excited polyatomic molecules: Effects of rotation, level structure, and field gradients Molecular Physics. 105: 1999-2008. DOI: 10.1080/00268970701504335  1
2007 Carmichael ES, Ballard JB, Lyding JW, Gruebele M. Frequency-modulated, single-molecule absorption detected by scanning tunneling microscopy Journal of Physical Chemistry C. 111: 3314-3321. DOI: 10.1021/jp067237n  1
2007 Gruebele M, Lyding J, Carmichael E, Ballard J. Detecting single-molecule absorption Materials Today. 10: 48-49. DOI: 10.1016/S1369-7021(07)70132-3  1
2007 Chowdary PD, Martinez TJ, Gruebele M. The vibrationally adiabatic torsional potential energy surface of trans-stilbene Chemical Physics Letters. 440: 7-11. DOI: 10.1016/j.cplett.2007.03.109  1
2007 Chowdary PD, Strickler B, Lee S, Gruebele M. The over(X, ∼) ← over(A, ∼) SEP spectra of jet-cooled thiophosgene Chemical Physics Letters. 434: 182-187. DOI: 10.1016/j.cplett.2006.12.011  1
2007 Engel M, Gruebele M. Shifted-update rotation wavepacket propagation with a laser pulse Chemical Physics Letters. 433: 368-372. DOI: 10.1016/j.cplett.2006.11.016  1
2006 Dumont C, Matsumura Y, Kim SJ, Li J, Kondrashkina E, Kihara H, Gruebele M. Solvent-tuning the collapse and helix formation time scales of lambda(6-85)*. Protein Science : a Publication of the Protein Society. 15: 2596-604. PMID 17075136 DOI: 10.1110/ps.062257406  1
2006 Jäger M, Zhang Y, Bieschke J, Nguyen H, Dendle M, Bowman ME, Noel JP, Gruebele M, Kelly JW. Structure-function-folding relationship in a WW domain. Proceedings of the National Academy of Sciences of the United States of America. 103: 10648-53. PMID 16807295 DOI: 10.1073/pnas.0600511103  1
2006 Ma H, Proctor DJ, Kierzek E, Kierzek R, Bevilacqua PC, Gruebele M. Exploring the energy landscape of a small RNA hairpin. Journal of the American Chemical Society. 128: 1523-30. PMID 16448122 DOI: 10.1021/ja0553856  1
2006 Deechongkit S, Nguyen H, Jager M, Powers ET, Gruebele M, Kelly JW. Beta-sheet folding mechanisms from perturbation energetics. Current Opinion in Structural Biology. 16: 94-101. PMID 16442278 DOI: 10.1016/j.sbi.2006.01.014  1
2006 Yang WY, Gruebele M. Binary and ternary aggregation within tethered protein constructs. Biophysical Journal. 90: 2930-7. PMID 16428283 DOI: 10.1529/biophysj.105.075846  1
2006 Sibert EL, Gruebele M. Molecular vibrational energy flow and dilution factors in an anharmonic state space. The Journal of Chemical Physics. 124: 024317. PMID 16422593 DOI: 10.1063/1.2155432  1
2006 Ballard JB, Carmichael ES, Shi D, Lyding JW, Gruebele M. Laser absorption scanning tunneling microscopy of carbon nanotubes. Nano Letters. 6: 45-9. PMID 16402785 DOI: 10.1021/nl0519231  1
2006 Ma H, Gruebele M. Low barrier kinetics: dependence on observables and free energy surface. Journal of Computational Chemistry. 27: 125-34. PMID 16302178 DOI: 10.1002/jcc.20311  1
2006 Leitner DM, Havenith M, Gruebele M. Biomolecule large-amplitude motion and solvation dynamics: Modelling and probes from THz to X-rays International Reviews in Physical Chemistry. 25: 553-582. DOI: 10.1080/01442350600862117  1
2006 Lee S, Engel M, Gruebele M. The state space model of vibrational energy flow: An experimental test using SEP spectra of jet-cooled thiophosgene Chemical Physics Letters. 420: 151-156. DOI: 10.1016/j.cplett.2005.12.064  1
2006 Larios E, Pitera JW, Swope WC, Gruebele M. Correlation of early orientational ordering of engineered λ6-85 structure with kinetics and thermodynamics Chemical Physics. 323: 45-53. DOI: 10.1016/j.chemphys.2005.08.048  1
2005 Nguyen H, Jäger M, Kelly JW, Gruebele M. Engineering a beta-sheet protein toward the folding speed limit. The Journal of Physical Chemistry. B. 109: 15182-6. PMID 16852923 DOI: 10.1021/jp052373y  1
2005 Gruebele M. Downhill protein folding: evolution meets physics. Comptes Rendus Biologies. 328: 701-12. PMID 16125648 DOI: 10.1016/j.crvi.2005.02.007  1
2005 Ma H, Gruebele M. Kinetics are probe-dependent during downhill folding of an engineered lambda6-85 protein. Proceedings of the National Academy of Sciences of the United States of America. 102: 2283-7. PMID 15699334 DOI: 10.1073/pnas.0409270102  1
2005 Yang WY, Gruebele M. Kinetic equivalence of the heat and cold structural transitions of lambda6-85. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 363: 565-73. PMID 15664899 DOI: 10.1098/rsta.2004.1508  1
2004 Proctor DJ, Ma H, Kierzek E, Kierzek R, Gruebele M, Bevilacqua PC. Folding thermodynamics and kinetics of YNMG RNA hairpins: specific incorporation of 8-bromoguanosine leads to stabilization by enhancement of the folding rate. Biochemistry. 43: 14004-14. PMID 15518549 DOI: 10.1021/bi048213e  1
2004 Yang WY, Gruebele M. Rate-temperature relationships in lambda-repressor fragment lambda 6-85 folding. Biochemistry. 43: 13018-25. PMID 15476395 DOI: 10.1021/bi049113b  1
2004 Yang WY, Gruebele M. Folding lambda-repressor at its speed limit. Biophysical Journal. 87: 596-608. PMID 15240492 DOI: 10.1529/biophysj.103.039040  1
2004 Deechongkit S, Nguyen H, Powers ET, Dawson PE, Gruebele M, Kelly JW. Context-dependent contributions of backbone hydrogen bonding to beta-sheet folding energetics. Nature. 430: 101-5. PMID 15229605 DOI: 10.1038/nature02611  1
2004 Yang WY, Gruebele M. Detection-dependent kinetics as a probe of folding landscape microstructure. Journal of the American Chemical Society. 126: 7758-9. PMID 15212506 DOI: 10.1021/ja0493751  1
2004 Larios E, Li JS, Schulten K, Kihara H, Gruebele M. Multiple probes reveal a native-like intermediate during low-temperature refolding of ubiquitin. Journal of Molecular Biology. 340: 115-25. PMID 15184026 DOI: 10.1016/j.jmb.2004.04.048  1
2004 Gruebele M, Wolynes PG. Vibrational energy flow and chemical reactions. Accounts of Chemical Research. 37: 261-7. PMID 15096063 DOI: 10.1021/ar030230t  1
2004 Yang WY, Pitera JW, Swope WC, Gruebele M. Heterogeneous folding of the trpzip hairpin: full atom simulation and experiment. Journal of Molecular Biology. 336: 241-51. PMID 14741219 DOI: 10.1016/j.jmb.2003.11.033  1
2004 Gruebele M. Quantum dynamics and control of vibrational dephasing Journal of Physics Condensed Matter. 16: R1057-R1088. DOI: 10.1088/0953-8984/16/30/R02  1
2004 Ma H, Ervin J, Gruebele M. Single-sweep detection of relaxation kinetics by submicrosecond midinfrared spectroscopy Review of Scientific Instruments. 75: 486-491. DOI: 10.1063/1.1637437  1
2004 Strickler B, Gruebele M. Vibrational dynamics of SCCl2 from the zero point to the first dissociation limit Physical Chemistry Chemical Physics. 6: 3786-3800. DOI: 10.1039/b403114h  1
2004 Larios E, Yang WY, Schulten K, Gruebele M. A similarity measure for partially folded proteins: Application to unfolded and native-like conformational fluctuations Chemical Physics. 307: 217-225. DOI: 10.1016/j.chemphys.2004.06.042  1
2004 Gruebele M. Chemical Physics: Preface Chemical Physics. 307: 97-98. DOI: 10.1016/j.chemphys.2004.06.039  1
2004 Ballard J, Shi D, Carmichael E, Pappu S, Lyding J, Gruebele M. Scanning tunneling microscopy using dynamic laser heating 2004 4th Ieee Conference On Nanotechnology. 68-70.  1
2004 Havenith M, Heugen U, Bergner A, Ebbinghaus S, Bründermann E, Larios E, Leitner DM, Gruebele M. THz-biology: Studying protein dynamics in solution Conference Digest of the 2004 Joint 29th International Conference On Infrared and Millimeter Waves and 12th International Conference On Terahertz Electronics. 731-732.  1
2003 Yang WY, Larios E, Gruebele M. On the extended beta-conformation propensity of polypeptides at high temperature. Journal of the American Chemical Society. 125: 16220-7. PMID 14692763 DOI: 10.1021/ja0360081  1
2003 Osváth S, Sabelko JJ, Gruebele M. Tuning the heterogeneous early folding dynamics of phosphoglycerate kinase. Journal of Molecular Biology. 333: 187-99. PMID 14516752 DOI: 10.1016/j.jmb.2003.08.011  1
2003 Osváth S, Gruebele M. Proline can have opposite effects on fast and slow protein folding phases. Biophysical Journal. 85: 1215-22. PMID 12885665 DOI: 10.1016/S0006-3495(03)74557-3  1
2003 Yang WY, Gruebele M. Folding at the speed limit. Nature. 423: 193-7. PMID 12736690 DOI: 10.1038/nature01609  1
2003 Nguyen H, Jager M, Moretto A, Gruebele M, Kelly JW. Tuning the free-energy landscape of a WW domain by temperature, mutation, and truncation. Proceedings of the National Academy of Sciences of the United States of America. 100: 3948-53. PMID 12651955 DOI: 10.1073/pnas.0538054100  1
2003 Marks DL, Bredfeldt J, Hambir S, Dlott D, Kitchell B, Gruebele M, Boppart SA. Molecular species sensitive optical coherence tomography using coherent anti-stokes Raman scattering spectroscopy Proceedings of Spie - the International Society For Optical Engineering. 4956: 9-13. DOI: 10.1117/12.477787  1
2003 Strickler B, Nemes L, Gruebele M. The CH stretching first overtone triad of ketene Journal of Molecular Spectroscopy. 219: 335-341. DOI: 10.1016/S0022-2852(03)00092-4  1
2003 Gruebele M. Mechanism and control of molecular energy flow: A modeling perspective Theoretical Chemistry Accounts. 109: 53-63. DOI: 10.1007/s00214-002-0394-2  1
2002 Ervin J, Gruebele M. Quantifying protein folding transition States with φ(t). Journal of Biological Physics. 28: 115-28. PMID 23345761 DOI: 10.1023/A:1019930203777  1
2002 Pandit A, Ma H, Van Stokkum IH, Gruebele M, Van Grondelle R. Time-resolved dissociation of the light-harvesting 1 complex of Rhodospirillum rubrum, studied by infrared laser temperature jump. Biochemistry. 41: 15115-20. PMID 12484747 DOI: 10.1021/bi0269005  1
2002 Snow CD, Nguyen H, Pande VS, Gruebele M. Absolute comparison of simulated and experimental protein-folding dynamics. Nature. 420: 102-6. PMID 12422224 DOI: 10.1038/nature01160  1
2002 Ervin J, Larios E, Osváth S, Schulten K, Gruebele M. What causes hyperfluorescence: folding intermediates or conformationally flexible native states? Biophysical Journal. 83: 473-83. PMID 12080134 DOI: 10.1016/S0006-3495(02)75183-7  1
2002 Gruebele M. Protein folding: the free energy surface. Current Opinion in Structural Biology. 12: 161-8. PMID 11959492 DOI: 10.1016/S0959-440X(02)00304-4  1
2002 Gruebele M. An intermediate seeks instant gratification. Nature Structural Biology. 9: 154-5. PMID 11875509 DOI: 10.1038/nsb0302-154  1
2002 Qin Z, Ervin J, Larios E, Gruebele M, Kihara H. Formation of a compact structured ensemble without fluorescence signature early during ubiquitin folding Journal of Physical Chemistry B. 106: 13040-13046. DOI: 10.1021/jp021433m  1
2002 Wong V, Gruebele M. Sub-exponential spin-boson decoherence in a finite bath Chemical Physics. 284: 29-44. DOI: 10.1016/S0301-0104(02)00534-7  1
2002 Bigwood RM, Gruebele M. Freezing molecular vibrational energy flow with coherent control Journal of Molecular Structure: Theochem. 589: 447-457. DOI: 10.1016/S0166-1280(02)00303-2  1
2002 Wong V, Gruebele M. Optically assisted atomic patterning: A multiple-quantum transition master equation study Chemical Physics Letters. 363: 182-188. DOI: 10.1016/S0009-2614(02)01167-3  1
2001 Jäger M, Nguyen H, Crane JC, Kelly JW, Gruebele M. The folding mechanism of a beta-sheet: the WW domain. Journal of Molecular Biology. 311: 373-93. PMID 11478867 DOI: 10.1006/jmbi.2001.4873  1
2001 Wong V, Gruebele M. Nonexponential dephasing in a local random matrix model Physical Review a - Atomic, Molecular, and Optical Physics. 63: 1-9. DOI: 10.1103/PhysRevA.63.022502  1
2001 Gruebele M. Fully quantum coherent control Chemical Physics. 267: 33-46. DOI: 10.1016/S0301-0104(00)00404-3  1
2001 Strickler B, Gruebele M. Potentials interpolated with potentials: The six-dimensional B̃ state surface of thiophosgene Chemical Physics Letters. 349: 137-145. DOI: 10.1016/S0009-2614(01)01153-8  1
2000 Crane JC, Koepf EK, Kelly JW, Gruebele M. Mapping the transition state of the WW domain beta-sheet. Journal of Molecular Biology. 298: 283-92. PMID 10764597 DOI: 10.1006/jmbi.2000.3665  1
2000 Ervin J, Sabelko J, Gruebele M. Submicrosecond real-time fluorescence sampling: Application to protein folding Journal of Photochemistry and Photobiology B: Biology. 54: 1-15. PMID 10739138 DOI: 10.1016/S1011-1344(00)00002-6  1
2000 Yang WY, Prince RB, Sabelko J, Moore JS, Gruebele M. Transition from exponential to nonexponential kinetics during formation of a nonbiological helix [17] Journal of the American Chemical Society. 122: 3248-3249. DOI: 10.1021/ja993343+  1
2000 Gruebele M. Vibrational energy flow: A state space approach Advances in Chemical Physics. 114: 193-261.  1
2000 Pearman R, Gruebele M. Approximate factorization of molecular potential surfaces II. Internal rotors Zeitschrift Fur Physikalische Chemie. 214: 1439-1466.  1
1999 Gruebele M. The fast protein folding problem. Annual Review of Physical Chemistry. 50: 485-516. PMID 15012420 DOI: 10.1146/annurev.physchem.50.1.485  1
1999 Sabelko J, Ervin J, Gruebele M. Observation of strange kinetics in protein folding Proceedings of the National Academy of Sciences of the United States of America. 96: 6031-6036. PMID 10339536 DOI: 10.1073/pnas.96.11.6031  1
1999 Wong V, Gruebele M. How does vibrational energy flow fill the molecular state space? Journal of Physical Chemistry A. 103: 10083-10092.  1
1999 Gruebele M, Johns JWC, Nemes L. Observation of the ν6 + ν9 Band of Ketene via Resonant Coriolis Interaction with ν8 Journal of Molecular Spectroscopy. 198: 376-380.  1
1998 Brooks CL, Gruebele M, Onuchic JN, Wolynes PG. Chemical physics of protein folding. Proceedings of the National Academy of Sciences of the United States of America. 95: 11037-8. PMID 9736683 DOI: 10.1073/pnas.95.19.11037  1
1998 Gruebele M, Wolynes PG. Satisfying turns in folding transitions. Nature Structural Biology. 5: 662-5. PMID 9699621 DOI: 10.1038/1354  1
1998 Gruebele M. Intramolecular vibrational dephasing obeys a power law at intermediate times. Proceedings of the National Academy of Sciences of the United States of America. 95: 5965-70. PMID 9600900 DOI: 10.1073/pnas.95.11.5965  1
1998 Bigwood R, Gruebele M, Leitner DM, Wolynes PG. The vibrational energy flow transition in organic molecules: theory meets experiment. Proceedings of the National Academy of Sciences of the United States of America. 95: 5960-4. PMID 9600899 DOI: 10.1073/pnas.95.11.5960  1
1998 Gruebele M, Sabelko J, Ballew R, Ervin J. Laser Temperature Jump Induced Protein Refolding Accounts of Chemical Research. 31: 699-707.  1
1998 Bigwood R, Milam B, Gruebele M. The ground state vibrational structure of SCCl2: Observation of backbone IVR Chemical Physics Letters. 287: 333-341.  1
1998 Pearman R, Gruebele M. On the importance of higher order anharmonic molecular couplings Journal of Chemical Physics. 108: 6561-6570.  1
1998 Gruebele M, Bigwood R. Molecular vibrational energy flow: Beyond the Golden Rule International Reviews in Physical Chemistry. 17: 91-145.  1
1998 Sabelko J, Ervin J, Gruebele M. Cold-denatured ensemble of apomyoglobin: Implications for the early steps of folding Journal of Physical Chemistry B. 102: 1806-1819.  1
1997 Bigwood R, Gruebele M. Models of intramolecular energy redistribution spanning deterministic and statistical approaches: Comparison with experiment Ach - Models in Chemistry. 134: 637-661.  1
1997 Madsen D, Pearman R, Gruebele M. Approximate factorization of molecular potential surfaces. I. Basic approach Journal of Chemical Physics. 106: 5874-5893.  1
1996 Ballew RM, Sabelko J, Gruebele M. Observation of distinct nanosecond and microsecond protein folding events Nature Structural Biology. 3: 923-926. PMID 8901868 DOI: 10.1038/nsb1196-923  1
1996 Ballew RM, Sabelko J, Gruebele M. Direct observation of fast protein folding: The initial collapse of apomyoglobin Proceedings of the National Academy of Sciences of the United States of America. 93: 5759-5764. PMID 8650166 DOI: 10.1073/pnas.93.12.5759  1
1996 Ballew RM, Sabelko J, Reiner C, Gruebele M. A single-sweep, nanosecond time resolution laser temperature-jump apparatus Review of Scientific Instruments. 67: 3694-3699.  1
1989 Heath JR, Cooksy AL, Gruebele MH, Schmuttenmaer CA, Saykally RJ. Diode-laser absorption spectroscopy of supersonic carbon cluster beams: the nu 3 spectrum of C5. Science (New York, N.Y.). 244: 564-6. PMID 11539817  1
Show low-probability matches.