Sergey Gratiy, Ph.D. - Publications

Affiliations: 
2009 Pennsylvania State University, State College, PA, United States 
Area:
Atmospheric Sciences, Atmospheric Science Physics

15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Dai K, Gratiy SL, Billeh YN, Xu R, Cai B, Cain N, Rimehaug AE, Stasik AJ, Einevoll GT, Mihalas S, Koch C, Arkhipov A. Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits. Plos Computational Biology. 16: e1008386. PMID 33253147 DOI: 10.1371/journal.pcbi.1008386  0.44
2020 Billeh YN, Cai B, Gratiy SL, Dai K, Iyer R, Gouwens NW, Abbasi-Asl R, Jia X, Siegle JH, Olsen SR, Koch C, Mihalas S, Arkhipov A. Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex. Neuron. PMID 32142648 DOI: 10.1016/j.neuron.2020.01.040  0.44
2020 Dai K, Hernando J, Billeh YN, Gratiy SL, Planas J, Davison AP, Dura-Bernal S, Gleeson P, Devresse A, Dichter BK, Gevaert M, King JG, Van Geit WAH, Povolotsky AV, Muller E, et al. The SONATA data format for efficient description of large-scale network models. Plos Computational Biology. 16: e1007696. PMID 32092054 DOI: 10.1371/journal.pcbi.1007696  0.32
2018 Arkhipov A, Gouwens NW, Billeh YN, Gratiy S, Iyer R, Wei Z, Xu Z, Abbasi-Asl R, Berg J, Buice M, Cain N, da Costa N, de Vries S, Denman D, Durand S, et al. Visual physiology of the layer 4 cortical circuit in silico. Plos Computational Biology. 14: e1006535. PMID 30419013 DOI: 10.1371/journal.pcbi.1006535  0.44
2018 Gratiy SL, Billeh YN, Dai K, Mitelut C, Feng D, Gouwens NW, Cain N, Koch C, Anastassiou CA, Arkhipov A. BioNet: A Python interface to NEURON for modeling large-scale networks. Plos One. 13: e0201630. PMID 30071069 DOI: 10.1371/journal.pone.0201630  0.44
2017 Jun JJ, Steinmetz NA, Siegle JH, Denman DJ, Bauza M, Barbarits B, Lee AK, Anastassiou CA, Andrei A, Aydın Ç, Barbic M, Blanche TJ, Bonin V, Couto J, Dutta B, ... Gratiy SL, et al. Fully integrated silicon probes for high-density recording of neural activity. Nature. 551: 232-236. PMID 29120427 DOI: 10.1038/nature24636  0.44
2017 Gratiy SL, Halnes G, Denman D, Hawrylycz MJ, Koch C, Einevoll GT, Anastassiou CA. From Maxwell's equations to the theory of current-source density analysis. The European Journal of Neuroscience. PMID 28177156 DOI: 10.1111/ejn.13534  0.44
2016 Hawrylycz M, Anastassiou C, Arkhipov A, Berg J, Buice M, Cain N, Gouwens NW, Gratiy S, Iyer R, Lee JH, Mihalas S, Mitelut C, Olsen S, Reid RC, Teeter C, et al. Inferring cortical function in the mouse visual system through large-scale systems neuroscience. Proceedings of the National Academy of Sciences of the United States of America. 113: 7337-44. PMID 27382147 DOI: 10.1073/pnas.1512901113  0.44
2013 Nizar K, Uhlirova H, Tian P, Saisan PA, Cheng Q, Reznichenko L, Weldy KL, Steed TC, Sridhar VB, MacDonald CL, Cui J, Gratiy SL, Sakadzić S, Boas DA, Beka TI, et al. In vivo stimulus-induced vasodilation occurs without IP3 receptor activation and may precede astrocytic calcium increase. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 8411-22. PMID 23658179 DOI: 10.1523/JNEUROSCI.3285-12.2013  0.44
2013 Gratiy SL, Pettersen KH, Einevoll GT, Dale AM. Pitfalls in the interpretation of multielectrode data: on the infeasibility of the neuronal current-source monopoles. Journal of Neurophysiology. 109: 1681-2. PMID 23503556 DOI: 10.1152/jn.01047.2012  0.44
2012 Reznichenko L, Cheng Q, Nizar K, Gratiy SL, Saisan PA, Rockenstein EM, González T, Patrick C, Spencer B, Desplats P, Dale AM, Devor A, Masliah E. In vivo alterations in calcium buffering capacity in transgenic mouse model of synucleinopathy. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 9992-8. PMID 22815513 DOI: 10.1523/JNEUROSCI.1270-12.2012  0.44
2011 Gratiy SL, Devor A, Einevoll GT, Dale AM. On the estimation of population-specific synaptic currents from laminar multielectrode recordings. Frontiers in Neuroinformatics. 5: 32. PMID 22203801 DOI: 10.3389/fninf.2011.00032  0.44
2010 Walker AC, Gratiy SL, Goldstein DB, Moore CH, Varghese PL, Trafton LM, Levin DA, Stewart B. A comprehensive numerical simulation of Io's sublimation-driven atmosphere Icarus. 207: 409-432. DOI: 10.1016/j.icarus.2010.01.012  0.44
2010 Gratiy SL, Walker AC, Levin DA, Goldstein DB, Varghese PL, Trafton LM, Moore CH. Multi-wavelength simulations of atmospheric radiation from Io with a 3-D spherical-shell backward Monte Carlo radiative transfer model Icarus. 207: 394-408. DOI: 10.1016/j.icarus.2009.11.004  0.44
2010 Gratiy SL, Levin DA, Walker AC. Rassvet: Backward Monte Carlo radiative transfer in spherical-shell planetary atmospheres Icarus. 206: 366-379. DOI: 10.1016/j.icarus.2009.08.027  0.44
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