Jeong-Mo Choi, Ph.D. - Publications

Affiliations: 
2011-2016 Chemistry and Chemical Biology Harvard University, Cambridge, MA, United States 
 2016-2019 Biomedical Engineering Washington University, Saint Louis, St. Louis, MO 
 2019-2020 Natural Science Research Institute Korea Advanced Institute of Science and Technology, Daejeon, South Korea 
 2020- Chemistry Pusan National University 

40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Dar F, Cohen SR, Mitrea DM, Phillips AH, Nagy G, Leite WC, Stanley CB, Choi JM, Kriwacki RW, Pappu RV. Biomolecular condensates form spatially inhomogeneous network fluids. Nature Communications. 15: 3413. PMID 38649740 DOI: 10.1038/s41467-024-47602-z  0.505
2023 Dar F, Cohen SR, Mitrea DM, Phillips AH, Nagy G, Leite WC, Stanley CB, Choi JM, Kriwacki RW, Pappu RV. Biomolecular condensates form spatially inhomogeneous network fluids. Research Square. PMID 37886520 DOI: 10.21203/rs.3.rs-3419423/v1  0.504
2023 Dar F, Cohen SR, Mitrea DM, Phillips AH, Nagy G, Leite WC, Stanley CB, Choi JM, Kriwacki RW, Pappu RV. Biomolecular condensates form spatially inhomogeneous network fluids. Biorxiv : the Preprint Server For Biology. PMID 37873180 DOI: 10.1101/2023.10.07.561338  0.504
2022 Kim CG, Hwang DE, Kumar R, Chung M, Eom YG, Kim H, Koo DH, Choi JM. Recent trends in studies of biomolecular phase separation. Bmb Reports. PMID 35880435  0.304
2022 Im D, Heo CE, Son MK, Park CR, Kim HI, Choi JM. Kinetic Modulation of Amyloid-β (1-42) Aggregation and Toxicity by Structure-Based Rational Design. Journal of the American Chemical Society. PMID 35073692 DOI: 10.1021/jacs.1c10173  0.337
2021 Ryu JK, Hwang DE, Choi JM. Current Understanding of Molecular Phase Separation in Chromosomes. International Journal of Molecular Sciences. 22. PMID 34639077 DOI: 10.3390/ijms221910736  0.294
2021 Sarkar A, Kim EY, Jang T, Hongdusit A, Kim H, Choi JM, Fox JM. Microbially Guided Discovery and Biosynthesis of Biologically Active Natural Products. Acs Synthetic Biology. PMID 33988973 DOI: 10.1021/acssynbio.1c00074  0.287
2020 Choi JM, Hyman AA, Pappu RV. Generalized models for bond percolation transitions of associative polymers. Physical Review. E. 102: 042403. PMID 33212590 DOI: 10.1103/PhysRevE.102.042403  0.52
2020 Song D, Jo Y, Choi JM, Jung Y. Client proximity enhancement inside cellular membrane-less compartments governed by client-compartment interactions. Nature Communications. 11: 5642. PMID 33159068 DOI: 10.1038/s41467-020-19476-4  0.395
2020 Han S, Kim YN, Jo G, Kim YE, Kim HM, Choi JM, Jung Y. Multivalent Interaction-Driven Assembly of Discrete, Flexible, and Asymmetric Supramolecular Protein Nano-Prisms. Angewandte Chemie (International Ed. in English). PMID 32856385 DOI: 10.1002/anie.202010054  0.382
2020 Choi JM, Holehouse AS, Pappu RV. Physical Principles Underlying the Complex Biology of Intracellular Phase Transitions. Annual Review of Biophysics. PMID 32004090 DOI: 10.1146/Annurev-Biophys-121219-081629  0.588
2020 Choi J, Pappu RV. The Stickers and Spacers Framework for Describing Phase Behavior of Multivalent Intrinsically Disordered Proteins Biophysical Journal. 118: 492a. DOI: 10.1016/J.Bpj.2019.11.2723  0.587
2019 Choi JM, Dar F, Pappu RV. LASSI: A lattice model for simulating phase transitions of multivalent proteins. Plos Computational Biology. 15: e1007028. PMID 31634364 DOI: 10.1371/Journal.Pcbi.1007028  0.637
2019 Bai W, Sargent CJ, Choi JM, Pappu RV, Zhang F. Covalently-assembled single-chain protein nanostructures with ultra-high stability. Nature Communications. 10: 3317. PMID 31346167 DOI: 10.1038/S41467-019-11285-8  0.614
2019 Choi JM, Pappu RV. Improvements to the ABSINTH forcefield for proteins based on experimentally derived amino-acid specific backbone conformational statistics. Journal of Chemical Theory and Computation. PMID 30633502 DOI: 10.1021/Acs.Jctc.8B00573  0.569
2019 Lalmansingh JM, Choi J, Pappu RV. Comparison of Forcefields in the Prediction of Intrinsic Residue-Specific Backbone Dihedral Angle Distributions of Blocked Amino Acids Biophysical Journal. 116: 145a. DOI: 10.1016/J.Bpj.2018.11.806  0.544
2019 Dar F, Choi J, Pappu RV. Computational Studies of the Phase Transitions and Network Structure of Dense Liquids Formed by Linear Multivalent Proteins Biophysical Journal. 116: 349a. DOI: 10.1016/J.Bpj.2018.11.1900  0.594
2019 Choi J, Mitrea DM, Stanley CB, Ruff KM, Holehouse AS, Kriwacki RW, Pappu RV. Internal Structure of Network Fluid Condensates Formed by Liquid-Liquid Phase Separation of a Multivalent Oligomeric Protein and a Disordered Linear Peptide Biophysical Journal. 116: 349a. DOI: 10.1016/J.Bpj.2018.11.1899  0.58
2018 Choi JM, Pappu RV. Experimentally derived and computationally optimized backbone conformational statistics for blocked amino acids. Journal of Chemical Theory and Computation. PMID 30516982 DOI: 10.1021/Acs.Jctc.8B00572  0.591
2018 Yoo TY, Choi JM, Conway W, Yu CH, Pappu RV, Needleman DJ. Measuring NDC80 binding reveals the molecular basis of tension-dependent kinetochore-microtubule attachments. Elife. 7. PMID 30044223 DOI: 10.7554/Elife.36392  0.545
2018 Razban RM, Gilson AI, Durfee N, Strobelt H, Dinkla K, Choi JM, Pfister H, Shakhnovich EI. ProteomeVis: a web app for exploration of protein properties from structure to sequence evolution across organisms' proteomes. Bioinformatics (Oxford, England). PMID 30010795 DOI: 10.1093/bioinformatics/bty516  0.545
2018 Wang J, Choi JM, Holehouse AS, Lee HO, Zhang X, Jahnel M, Maharana S, Lemaitre R, Pozniakovsky A, Drechsel D, Poser I, Pappu RV, Alberti S, Hyman AA. A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins. Cell. PMID 29961577 DOI: 10.1016/J.Cell.2018.06.006  0.625
2018 Rotem A, Serohijos AWR, Chang CB, Wolfe JT, Fischer AE, Mehoke TS, Zhang H, Tao Y, Ung WL, Choi JM, Rodrigues JV, Abimbola OK, Koehler SA, Wu S, Thielen PM, et al. Evolution on the biophysical fitness landscape of an RNA virus. Molecular Biology and Evolution. PMID 29955873 DOI: 10.1093/Molbev/Msy131  0.541
2018 Razban RM, Gilson AI, Durfee N, Strobelt H, Dinkla K, Choi JM, Pfister H, Shakhnovich EI. ProteomeVis: a web app for exploration of protein properties from structure to sequence evolution across organisms' proteomes. Bioinformatics (Oxford, England). PMID 29741573 DOI: 10.1093/Bioinformatics/Bty370  0.61
2018 Klein EY, Blumenkrantz D, Serohijos A, Shakhnovich E, Choi JM, Rodrigues JV, Smith BD, Lane AP, Feldman A, Pekosz A. Stability of the Influenza Virus Hemagglutinin Protein Correlates with Evolutionary Dynamics. Msphere. 3. PMID 29299534 DOI: 10.1128/mSphereDirect.00554-17  0.739
2018 Yoo TY, Choi J, Conway W, Yu C, Pappu RV, Needleman DJ. Author response: Measuring NDC80 binding reveals the molecular basis of tension-dependent kinetochore-microtubule attachments Elife. DOI: 10.7554/Elife.36392.025  0.538
2018 Choi J, Wang J, Holehouse AS, Alberti S, Hyman AA, Pappu RV. Molecular Grammar Governing Phase Behavior of Intrinsically Disordered Proteins with Prion-like Domains Biophysical Journal. 114: 561a. DOI: 10.1016/J.Bpj.2017.11.3067  0.593
2018 Fossat MJ, Harmon TS, Posey AE, Choi J, Pappu RV. Increasing the Accuracy in All-Atom Simulations of Intrinsically Disordered Proteins based on the Absinth Model Biophysical Journal. 114: 432a. DOI: 10.1016/J.Bpj.2017.11.2392  0.574
2017 Gilson AI, Marshall-Christensen A, Choi JM, Shakhnovich EI. The Role of Evolutionary Selection in the Dynamics of Protein Structure Evolution. Biophysical Journal. 112: 1350-1365. PMID 28402878 DOI: 10.1016/J.Bpj.2017.02.029  0.616
2017 Choi JM, Gilson AI, Shakhnovich EI. Graph's Topology and Free Energy of a Spin Model on the Graph. Physical Review Letters. 118: 088302. PMID 28282198 DOI: 10.1103/Physrevlett.118.088302  0.518
2017 Choi J, Pappu RV. Lattice Models for Modeling Sequence-Specific Phase Behavior of Low Complexity Domains Biophysical Journal. 112: 208a. DOI: 10.1016/J.Bpj.2016.11.1151  0.631
2016 Kang K, Choi JM, Fox JM, Snyder PW, Moustakas DT, Whitesides GM. Acetylation of Surface Lysine Groups of a Protein Alters the Organization and Composition of Its Crystal Contacts. The Journal of Physical Chemistry. B. PMID 27292012 DOI: 10.1021/Acs.Jpcb.6B01105  0.463
2016 Chéron N, Serohijos AW, Choi JM, Shakhnovich EI. Evolutionary dynamics of viral escape under antibodies stress: A biophysical model. Protein Science : a Publication of the Protein Society. PMID 26939576 DOI: 10.1002/Pro.2915  0.723
2015 Bershtein S, Serohijos AW, Bhattacharyya S, Manhart M, Choi JM, Mu W, Zhou J, Shakhnovich EI. Protein Homeostasis Imposes a Barrier on Functional Integration of Horizontally Transferred Genes in Bacteria. Plos Genetics. 11: e1005612. PMID 26484862 DOI: 10.1371/Journal.Pgen.1005612  0.73
2015 Bershtein S, Choi JM, Bhattacharyya S, Budnik B, Shakhnovich E. Systems-level response to point mutations in a core metabolic enzyme modulates genotype-phenotype relationship. Cell Reports. 11: 645-56. PMID 25892240 DOI: 10.1016/J.Celrep.2015.03.051  0.566
2015 Choi JM, Serohijos AW, Murphy S, Lucarelli D, Lofranco LL, Feldman A, Shakhnovich EI. Minimalistic predictor of protein binding energy: contribution of solvation factor to protein binding. Biophysical Journal. 108: 795-8. PMID 25692584 DOI: 10.1016/J.Bpj.2015.01.001  0.74
2014 Peleg O, Choi JM, Shakhnovich EI. Evolution of specificity in protein-protein interactions. Biophysical Journal. 107: 1686-96. PMID 25296322 DOI: 10.1016/J.Bpj.2014.08.004  0.626
2014 Klein EY, Serohijos AW, Choi JM, Shakhnovich EI, Pekosz A. Influenza A H1N1 pandemic strain evolution--divergence and the potential for antigenic drift variants. Plos One. 9: e93632. PMID 24699432 DOI: 10.1371/Journal.Pone.0093632  0.718
2012 Kim H, Choi JM, Goddard WA. Universal Correction of Density Functional Theory to Include London Dispersion (up to Lr, Element 103). The Journal of Physical Chemistry Letters. 3: 360-3. PMID 26285852 DOI: 10.1021/Jz2016395  0.473
2008 Ahn DS, Lee J, Choi JM, Lee KS, Baek SJ, Lee K, Baeck KK, Kim SK. State-selective predissociation dynamics of methylamines: the vibronic and HD effects on the conical intersection dynamics. The Journal of Chemical Physics. 128: 224305. PMID 18554011 DOI: 10.1063/1.2937451  0.326
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