Edward N. Baker - Related publications

Affiliations: 
Department of Chemistry and Biochemistry Massey University (New Zealand) 
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Jia Q, Xie W. Alternative conformation induced by substrate binding for Arabidopsis thaliana N6-methyl-AMP deaminase. Nucleic Acids Research. PMID 30721978 DOI: 10.1093/nar/gkz070   
2019 Kiliszek A, Rypniewski W, Rząd K, Milewski S, Gabriel I. Crystal structures of aminotransferases Aro8 and Aro9 from Candida albicans and structural insights into their properties. Journal of Structural Biology. PMID 30742897 DOI: 10.1016/j.jsb.2019.02.001   
2019 Kowalski AE, Johnson LB, Dierl HK, Park S, Huber TR, Snow CD. Porous protein crystals as scaffolds for enzyme immobilization. Biomaterials Science. PMID 30758353 DOI: 10.1039/c8bm01378k   
2019 Badran MJ, Bertoletti N, Keils A, Heine A, Klebe G, Marchais-Oberwinkler S. Mutational and structural studies uncover crucial amino acids determining activity and stability of 17β-HSD14. The Journal of Steroid Biochemistry and Molecular Biology. 189: 135-144. PMID 30836176 DOI: 10.1016/j.jsbmb.2019.02.009   
2019 Chen X, Wang J, Liu M, Yang W, Wang Y, Tang R, Zhang M. Crystallographic evidence for substrate-assisted catalysis of β-N-acetylhexosaminidas from Akkermansia muciniphila. Biochemical and Biophysical Research Communications. PMID 30846208 DOI: 10.1016/j.bbrc.2019.02.074   
2019 Ellis-Guardiola K, Rui H, Beckner RL, Srivastava P, Sukumar N, Roux B, Lewis JC. Crystal Structure and Conformational Dynamics of Pyrococcus furiosus Prolyl Oligopeptidase. Biochemistry. PMID 30786206 DOI: 10.1021/acs.biochem.9b00031   
2019 Zhang AT, Montgomery MG, Leslie AGW, Cook GM, Walker JE. The structure of the catalytic domain of the ATP synthase from is a target for developing antitubercular drugs. Proceedings of the National Academy of Sciences of the United States of America. PMID 30683723 DOI: 10.1073/pnas.1817615116   
2019 Mikulska-Ruminska K, Shrivastava IH, Krieger J, Zhang S, Li H, Bayir H, Wenzel SE, VanDemark AP, Kagan VE, Bahar I. Characterization of differential dynamics, specificity, and allostery of lipoxygenase family members. Journal of Chemical Information and Modeling. PMID 30762363 DOI: 10.1021/acs.jcim.9b00006   
2019 Labourel A, Baslé A, Munoz-Munoz J, Ndeh D, Booth S, Nepogodiev SA, Field RA, Cartmell A. Structural and functional analysis of glycoside hydrolase 138 enzymes targeting chain A galacturonic acid in the complex pectin rhamnogalacturonan II. The Journal of Biological Chemistry. PMID 30877196 DOI: 10.1074/jbc.RA118.006626   
2019 Bueno R, Dawson A, Hunter WN. An assessment of three human methylenetetrahydrofolate dehydrogenase/cyclohydrolase-ligand complexes following further refinement. Acta Crystallographica. Section F, Structural Biology Communications. 75: 148-152. PMID 30839287 DOI: 10.1107/S2053230X18018083   
2019 Isupov MN, Boyko KM, Sutter JM, James P, Sayer C, Schmidt M, Schoenheit P, Nikolaeva AY, Stekhanova TN, Mardanov AV, Ravin NV, Bezsudnova EY, Popov VO, Littlechild JA. Thermostable Branched-Chain Amino Acid Transaminases From the Archaea and : Biochemical and Structural Characterization. Frontiers in Bioengineering and Biotechnology. 7: 7. PMID 30733943 DOI: 10.3389/fbioe.2019.00007   
2019 Shields CM, Zvonok N, Zvonok A, Makriyannis A. Biochemical and Proteomic Characterization of Recombinant Human α/β Hydrolase Domain 6. Scientific Reports. 9: 890. PMID 30696836 DOI: 10.1038/s41598-018-36633-4   
2019 Özen A, Prachanronarong K, Matthew AN, Soumana DI, Schiffer CA. Resistance outside the substrate envelope: hepatitis C NS3/4A protease inhibitors. Critical Reviews in Biochemistry and Molecular Biology. 1-16. PMID 30821513 DOI: 10.1080/10409238.2019.1568962   
2019 Watanabe Y, Watanabe S, Itoh Y, Watanabe Y. Crystal structure of substrate-bound bifunctional proline racemase/hydroxyproline epimerase from a hyperthermophilic archaeon. Biochemical and Biophysical Research Communications. PMID 30773259 DOI: 10.1016/j.bbrc.2019.01.141   
2019 Buechner GS, Millington ME, Perry K, D'Antonio EL. The crystal structure of glucokinase from Leishmania braziliensis. Molecular and Biochemical Parasitology. 227: 47-52. PMID 30571993 DOI: 10.1016/j.molbiopara.2018.12.002   
2019 Chen W, Frantom PA. Distinct mechanisms of substrate selectivity in the DRE-TIM metallolyase superfamily: A role for the LeuA dimer regulatory domain. Archives of Biochemistry and Biophysics. PMID 30668939 DOI: 10.1016/j.abb.2019.01.021   
2019 Czech L, Höppner A, Kobus S, Seubert A, Riclea R, Dickschat JS, Heider J, Smits SHJ, Bremer E. Illuminating the catalytic core of ectoine synthase through structural and biochemical analysis. Scientific Reports. 9: 364. PMID 30674920 DOI: 10.1038/s41598-018-36247-w   
2019 Stunkard LM, Dixon AD, Huth TJ, Lohman JR. Sulfonate/nitro bearing methylmalonyl-thioester isosteres applied to methylmalonyl-CoA decarboxylase structure-function studies. Journal of the American Chemical Society. PMID 30869886 DOI: 10.1021/jacs.9b00650   
2019 Chetri PB, Shukla R, Tripathi T. Identification and characterization of glyceraldehyde 3-phosphate dehydrogenase from Fasciola gigantica. Parasitology Research. PMID 30706165 DOI: 10.1007/s00436-019-06225-w   
2019 Hanževački M, Čondić Jurkić K, Banhatti RD, Smith AS, Smith DM. The Influence of Chemical Change on Protein Dynamics: A Case Study with Pyruvate Formate-Lyase. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 30901109 DOI: 10.1002/chem.201900663   
2019 Knihtila R, Volmar AY, Meilleur F, Mattos C. Titration of ionizable groups in proteins using multiple neutron data sets from a single crystal: application to the small GTPase Ras. Acta Crystallographica. Section F, Structural Biology Communications. 75: 111-115. PMID 30713162 DOI: 10.1107/S2053230X18018125   
2019 Siegel SD, Amer BR, Wu C, Sawaya MR, Gosschalk JE, Clubb RT, Ton-That H. Structure and Mechanism of LcpA, a Phosphotransferase That Mediates Glycosylation of a Gram-Positive Bacterial Cell Wall-Anchored Protein. Mbio. 10. PMID 30782654 DOI: 10.1128/mBio.01580-18   
2019 Wang Y, V S M, Kim J, Li G, Ahuja LG, Aoto P, Taylor SS, Veglia G. Globally correlated conformational entropy underlies positive and negative cooperativity in a kinase's enzymatic cycle. Nature Communications. 10: 799. PMID 30778078 DOI: 10.1038/s41467-019-08655-7   
2019 Gholivand K, Pooyan M, Mohammadpanah F, Pirastefar F, Junk PC, Wang J, Ebrahimi Valmoozi AA, Mani-Varnosfaderani A. Synthesis, crystal structure and biological evaluation of new phosphoramide derivatives as urease inhibitors using docking, QSAR and kinetic studies. Bioorganic Chemistry. 86: 482-493. PMID 30772649 DOI: 10.1016/j.bioorg.2019.01.064   
2019 Zhou Y, Wei Y, Lin L, Xu T, Ang EL, Zhao H, Yuchi Z, Zhang Y. Biochemical and structural investigation of sulfoacetaldehyde reductase from . The Biochemical Journal. PMID 30718306 DOI: 10.1042/BCJ20190005   
2019 Malico AA, Dave K, Adediran SA, Pratt RF. Specificity of extended O-aryloxycarbonyl hydroxamates as inhibitors of a class C β-lactamase. Bioorganic & Medicinal Chemistry. PMID 30792103 DOI: 10.1016/j.bmc.2019.02.023   
2019 Zong G, Fei S, Liu X, Li J, Gao Y, Yang X, Wang X, Shen Y. Crystal structures of rhamnosyltransferase UGT89C1 from Arabidopsis thaliana reveal the molecular basis of sugar donor specificity for UDP-β-L-rhamnose and rhamnosylation mechanism. The Plant Journal : For Cell and Molecular Biology. PMID 30893500 DOI: 10.1111/tpj.14321   
2019 Yamaguchi H, Kamegawa A, Nakata K, Kashiwagi T, Mizukoshi T, Fujiyoshi Y, Tani K. Structural insights into thermostabilization of leucine dehydrogenase from its atomic structure by cryo-electron microscopy. Journal of Structural Biology. 205: 11-21. PMID 30543982 DOI: 10.1016/j.jsb.2018.12.001   
2019 Di Matteo A, Federici L, Masulli M, Carletti E, Santorelli D, Cassidy J, Paradisi F, Di Ilio C, Allocati N. Structural Characterization of the Xi Class Glutathione Transferase From the Haloalkaliphilic Archaeon . Frontiers in Microbiology. 10: 9. PMID 30713525 DOI: 10.3389/fmicb.2019.00009   
2019 Pantouris G, Dioletis E, Chen Y, Thompson DC, Vasiliou V, Lolis EJ. Expression, purification and crystallization of the novel Xenopus tropicalis ALDH16B1, a homologue of human ALDH16A1. Chemico-Biological Interactions. PMID 30894314 DOI: 10.1016/j.cbi.2019.03.009   
2019 Chen X, Riley BT, de Veer SJ, Hoke DE, Van Haeften J, Leahy D, Swedberg JE, Brattsand M, Hartfield PJ, Buckle AM, Harris JM. Potent, multi-target serine protease inhibition achieved by a simplified β-sheet motif. Plos One. 14: e0210842. PMID 30668585 DOI: 10.1371/journal.pone.0210842   
2019 Kang PA, Oh J, Lee H, Witte CP, Rhee S. Crystal structure and mutational analyses of ribokinase from Arabidopsis thaliana. Journal of Structural Biology. PMID 30822455 DOI: 10.1016/j.jsb.2019.02.007   
2019 Mera A, de Lima MZT, Bernardes A, Garcia W, Muniz JRC. Low-resolution structure, oligomerization and its role on the enzymatic activity of a sucrose-6-phosphate hydrolase from Bacillus licheniformis. Amino Acids. PMID 30673850 DOI: 10.1007/s00726-018-02690-2   
2019 Adhav A, Harne S, Bhide A, Giri A, Pananghat G, Joshi R. Mechanistic Insights into Enzymatic Catalysis by Trehalase from the insect gut endosymbiont Enterobacter cloacae. The Febs Journal. PMID 30657252 DOI: 10.1111/febs.14760   
2019 Oh T, El Kouni MH. Kinetics Mechanism and Regulation of Native Human Hepatic Thymidine Phosphorylase. The International Journal of Biochemistry & Cell Biology. PMID 30849523 DOI: 10.1016/j.biocel.2019.03.004   
2019 Jez JM. Structural Biology of Plant Sulfur Metabolism: From Sulfate to Glutathione. Journal of Experimental Botany. PMID 30825314 DOI: 10.1093/jxb/erz094   
2019 Topaz GR, Epiter-Smith V, Robolo C, Emad M, Ford V, Daley J, Byron J, Stieglitz KA. Characterization of Recombinant Fructose 1,6-bisphosphatase (FBPase) Gene Mutations: Evidence of Inhibition/Activation of FBPase Protein by Gene Mutation. Bioscience Reports. PMID 30683805 DOI: 10.1042/BSR20180960   
2019 Israr M, Lv G, Xu S, Li Y, Ding S, Zhao B, Ju J. Biochemical characterization and mutational analysis of alanine racemase from Clostridium perfringens. Journal of Bioscience and Bioengineering. PMID 30826314 DOI: 10.1016/j.jbiosc.2019.02.003   
2019 Zhi Y, Narindoshvili T, Bogomolnaya L, Talamantes M, El Saadi A, Andrews-Polymenis H, Raushel FM. Deciphering the Enzymatic Function of the Bovine Enteric Infection Related Protein YfeJ from Salmonella enterica Serotype Typhimurium. Biochemistry. PMID 30715856 DOI: 10.1021/acs.biochem.8b01283   
2019 Nagy EZA, Nagy CL, Filip A, Nagy K, Gál E, Tőtős R, Poppe L, Paizs C, Bencze LC. Exploring the substrate scope of ferulic acid decarboxylase (FDC1) from Saccharomyces cerevisiae. Scientific Reports. 9: 647. PMID 30679592 DOI: 10.1038/s41598-018-36977-x   
2019 Lee SH, Son HF, Kim KJ. Structural insights into the inhibition properties of archaeon citrate synthase from Metallosphaera sedula. Plos One. 14: e0212807. PMID 30794680 DOI: 10.1371/journal.pone.0212807   
2019 Bonk BM, Weis JW, Tidor B. Machine Learning Identifies Chemical Characteristics that Promote Enzyme Catalysis. Journal of the American Chemical Society. PMID 30761897 DOI: 10.1021/jacs.8b13879   
2019 Zhang L, Ko TP, Malwal SR, Liu W, Zhou S, Yu X, Oldfield E, Guo RT, Chen CC. Complex structures of MoeN5 with substrate analogues suggest sequential catalytic mechanism. Biochemical and Biophysical Research Communications. PMID 30837154 DOI: 10.1016/j.bbrc.2019.02.131   
2019 Tang W, Lan D, Zhao Z, Li S, Li X, Wang Y. A Thermostable Monoacylglycerol Lipase from Marine sp. 12AMOR1: Biochemical Characterization and Mutagenesis Study. International Journal of Molecular Sciences. 20. PMID 30759774 DOI: 10.3390/ijms20030780   
2019 Nguyen K, DeSieno MA, Bae B, Johannes TW, Cobb RE, Zhao H, Nair SK. Characterization of the flavin monooxygenase involved in biosynthesis of the antimalarial FR-900098. Organic & Biomolecular Chemistry. PMID 30681110 DOI: 10.1039/c8ob02840k   
2019 Bala SC, Haque N, Pillalamarri V, Reddi R, Kashyap R, Marapaka AK, Addlagatta A. Discovery of a new class of type 1 methionine aminopeptidases that have relaxed substrate specificity. International Journal of Biological Macromolecules. PMID 30763644 DOI: 10.1016/j.ijbiomac.2019.02.055   
2019 Wang W, Su S, Wang S, Ye L, Yu H. Significantly improved catalytic efficiency of caffeic acid O-methyltransferase towards N-acetylserotonin by strengthening its interactions with the unnatural substrate's terminal structure. Enzyme and Microbial Technology. 125: 1-5. PMID 30885319 DOI: 10.1016/j.enzmictec.2019.02.005   
2019 Kitadokoro K, Mizuki K, Matsui S, Osokoshi R, Uschara T, Kawai F, Kamitani S. Structural insights into the unique polylactate-degrading mechanism of Thermobifida alba cutinase. The Febs Journal. PMID 30761732 DOI: 10.1111/febs.14781   
2019 Liang J, Han Q, Tan Y, Ding H, Li J. Current Advances on Structure-Function Relationships of Pyridoxal 5'-Phosphate-Dependent Enzymes. Frontiers in Molecular Biosciences. 6: 4. PMID 30891451 DOI: 10.3389/fmolb.2019.00004   
2019 Rose HR, Maggiolo AO, McBride MJ, Palowitch GM, Pandelia ME, Davis KM, Yennawar NH, Boal AK. Structures of class Id ribonucleotide reductase catalytic subunits reveal a minimal architecture for deoxynucleotide biosynthesis. Biochemistry. PMID 30855138 DOI: 10.1021/acs.biochem.8b01252