Alex I. Smirnov - Related publications

Affiliations: 
North Carolina State University, Raleigh, NC 
Area:
magnetic resonance, biophysics, spin-labeling, lipid membrane, nanomaterials
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Gravel AE, Arnold AA, Fillion M, Auger M, Warschawski DE, Marcotte I. Magnetically-orientable Tween-based model membranes for NMR studies of proteins. Biochimica Et Biophysica Acta. Biomembranes. 1862: 183379. PMID 32473826 DOI: 10.1016/j.bbamem.2020.183379   
2020 Sprague-Piercy MA, Bierma JC, Crosby MG, Carpenter BP, Takahashi GR, Paulino J, Hung I, Zhang R, Kelly JE, Kozlyuk N, Chen X, Butts CT, Martin RW. The Droserasin 1 PSI: A Membrane-Interacting Antimicrobial Peptide from the Carnivorous Plant . Biomolecules. 10. PMID 32709016 DOI: 10.3390/biom10071069   
2020 Dlouhý O, Kurasová I, Karlický V, Javornik U, Šket P, Petrova NZ, Krumova SB, Plavec J, Ughy B, Špunda V, Garab G. Modulation of non-bilayer lipid phases and the structure and functions of thylakoid membranes: effects on the water-soluble enzyme violaxanthin de-epoxidase. Scientific Reports. 10: 11959. PMID 32686730 DOI: 10.1038/s41598-020-68854-x   
2020 Miller ZM, Zhang JD, Donald WA, Prell JS. Gas-Phase Protonation Thermodynamics of Biological Lipids: Experiment, Theory, and Implications. Analytical Chemistry. PMID 32628014 DOI: 10.1021/acs.analchem.0c00613   
2020 Shoji K, Kawano R, White RJ. Recessed Ag/AgCl Microelectrode-Supported Lipid Bilayer for Nanopore Sensing. Analytical Chemistry. PMID 32597640 DOI: 10.1021/acs.analchem.0c02720   
2020 Hutchison J, Shih KC, Scheidt HA, Fantin S, Parson K, Pantepoulos G, Harrington H, Mittendorf K, Qian S, Stein RA, Collier SE, Chambers MG, Katsaras J, Voehler MW, Ruotolo BT, et al. Bicelles Rich in both Sphingolipids and Cholesterol and Their Use in Studies of Membrane Proteins. Journal of the American Chemical Society. PMID 32575981 DOI: 10.1021/jacs.0c04669   
2020 Lam K, Tajkhorshid E. Membrane Interactions of Cy3 and Cy5 Fluorophores and Their Effects on Membrane-Protein Dynamics. Biophysical Journal. PMID 32533943 DOI: 10.1016/j.bpj.2020.05.027   
2020 Ahammad T, Drew DL, Khan RH, Sahu ID, Faul E, Li T, Lorigan GA. Structural Dynamics and Topology of the Inactive Form of S21 Holin in a Lipid Bilayer Using CW-EPR Spectroscopy. The Journal of Physical Chemistry. B. PMID 32501696 DOI: 10.1021/acs.jpcb.0c03575   
2020 Liu HY, Kumar R, Takai M, Hirtz M. Enhanced Stability of Lipid Structures by Dip-Pen Nanolithography on Block-Type MPC Copolymer. Molecules (Basel, Switzerland). 25. PMID 32549371 DOI: 10.3390/molecules25122768   
2020 Flores J, White BM, Brea RJ, Baskin JM, Devaraj NK. Lipids: chemical tools for their synthesis, modification, and analysis. Chemical Society Reviews. 49: 4602-4614. PMID 32691785 DOI: 10.1039/d0cs00154f   
2020 Rogers JR, Geissler PL. Breakage of Hydrophobic Contacts Limits the Rate of Passive Lipid Exchange between Membranes. The Journal of Physical Chemistry. B. PMID 32633983 DOI: 10.1021/acs.jpcb.0c04139   
2020 Lu J, Mazidi H, Ding T, Zhang O, Lew MD. Single-molecule 3D orientation imaging reveals nanoscale compositional heterogeneity in lipid membranes. Angewandte Chemie (International Ed. in English). PMID 32648275 DOI: 10.1002/anie.202006207   
2020 De Mel JU, Gupta S, Perera RM, Ngo LT, Zolnierczuk P, Bleuel M, Pingali SV, Schneider GJ. Influence of external NaCl salt on membrane rigidity of neutral DOPC vesicles. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 32672981 DOI: 10.1021/acs.langmuir.0c01004   
2020 Aryal CM, Bui NN, Khadka NK, Song L, Pan J. The helix 0 of endophilin modifies membrane material properties and induces local curvature. Biochimica Et Biophysica Acta. Biomembranes. 183397. PMID 32533976 DOI: 10.1016/j.bbamem.2020.183397   
2020 Rinaldin M, Fonda P, Giomi L, Kraft DJ. Lipid exchange enhances geometric pinning in multicomponent membranes on patterned substrates. Soft Matter. 16: 4932-4940. PMID 32435786 DOI: 10.1039/c9sm02393c   
2020 Yuan Y, Liu X, Liu T, Liu W, Zhu Y, Zhang H, Zhao C. Molecular dynamics exploring of atmosphere components interacting with lung surfactant phospholipid bilayers. The Science of the Total Environment. 743: 140547. PMID 32659550 DOI: 10.1016/j.scitotenv.2020.140547   
2020 Yu Y, Klauda JB. Update of the CHARMM36 United Atom Chain Model for Hydrocarbons and Phospholipids. The Journal of Physical Chemistry. B. PMID 32639155 DOI: 10.1021/acs.jpcb.0c04795   
2020 Yu Y, Klauda JB. Update of the CHARMM36 United Atom Chain Model for Hydrocarbons and Phospholipids. The Journal of Physical Chemistry. B. PMID 32639155 DOI: 10.1021/acs.jpcb.0c04795   
2020 Bradley RP, Slochower DR, Janmey PA, Radhakrishnan R. Divalent cations bind to phosphoinositides to induce ion and isomer specific propensities for nano-cluster initiation in bilayer membranes. Royal Society Open Science. 7: 192208. PMID 32537210 DOI: 10.1098/rsos.192208   
2020 Gironi B, Kahveci Z, McGill B, Lechner BD, Pagliara S, Metz J, Morresi A, Palombo F, Sassi P, Petrov PG. Effect of DMSO on the Mechanical and Structural Properties of Model and Biological Membranes. Biophysical Journal. PMID 32610089 DOI: 10.1016/j.bpj.2020.05.037   
2020 Engberg O, Kováčik A, Pullmannová P, Juhaščik M, Opálka L, Huster D, Vávrová K. The Sphingosine and Acyl Chains of Ceramide [NS] Show Very Different Structure and Dynamics Challenging Our Understanding of the Skin Barrier. Angewandte Chemie (International Ed. in English). PMID 32515145 DOI: 10.1002/anie.202003375   
2020 Liu Y, Batchu KC, Kelley EG, Porcar L, Perez-Salas U. Creating asymmetric phospholipid vesicles via exchange with lipid coated silica nanoparticles. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 32623897 DOI: 10.1021/acs.langmuir.0c01188   
2020 Khangholi N, Seemann R, Fleury JB. Simultaneous measurement of surface and bilayer tension in a microfluidic chip. Biomicrofluidics. 14: 024117. PMID 32549923 DOI: 10.1063/1.5137810   
2020 Waldie S, Sebastiani F, Browning K, Maric S, Lind TK, Yepuri N, Darwish TA, Moulin M, Strohmeier G, Pichler H, Skoda MWA, Maestro A, Haertlein M, Forsyth VT, Bengtsson E, et al. Lipoprotein ability to exchange and remove lipids from model membranes as a function of fatty acid saturation and presence of cholesterol. Biochimica Et Biophysica Acta. Molecular and Cell Biology of Lipids. 158769. PMID 32712249 DOI: 10.1016/j.bbalip.2020.158769   
2020 Carter JW, Gonzalez MA, Brooks NJ, Seddon JM, Bresme F. Flip-flop asymmetry of cholesterol in model membranes induced by thermal gradients. Soft Matter. PMID 32538402 DOI: 10.1039/d0sm00546k   
2020 Dorrell MW, Heberle FA, Katsaras J, Maibaum L, Lyman E, Sodt AJ. Laterally resolved small-angle scattering intensity from lipid bilayer simulations: an exact and a limited-range treatment. Journal of Chemical Theory and Computation. PMID 32579370 DOI: 10.1021/acs.jctc.0c00132   
2020 Shobhna, Kumari M, Kashyap HK. A coarse-grained model of dimethyl sulfoxide for molecular dynamics simulations with lipid membranes. The Journal of Chemical Physics. 153: 035104. PMID 32716195 DOI: 10.1063/5.0014614   
2020 Fritz C, Kost B. Testing Pollen Tube Proteins for In Vivo Binding to Phosphatidic Acid by n-Butanol Treatment and Confocal Microscopy. Methods in Molecular Biology (Clifton, N.J.). 2160: 307-325. PMID 32529446 DOI: 10.1007/978-1-0716-0672-8_22   
2020 Lim SWZ, Wong YS, Czarny B, Venkatraman S. Microfluidic-directed self-assembly of liposomes: Role of interdigitation. Journal of Colloid and Interface Science. 578: 47-57. PMID 32505913 DOI: 10.1016/j.jcis.2020.05.114   
2020 Martinotti C, Ruiz-Perez L, Deplazes E, Mancera RL. Molecular dynamics simulation of the interaction of small molecules with biological membranes. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 32452115 DOI: 10.1002/cphc.202000219   
2020 Nickels JD, Poudel S, Chatterjee S, Farmer A, Cordner D, Campagna SR, Giannone RJ, Hettich RL, Myles DAA, Standaert RF, Katsaras J, Elkins JG. Impact of Fatty-Acid Labeling of Membranes on the Cellular Lipidome and Proteome. Frontiers in Microbiology. 11: 914. PMID 32499768 DOI: 10.3389/fmicb.2020.00914   
2020 Kwon B, Mandal T, Elkins MR, Oh Y, Cui Q, Hong M. Cholesterol Interaction with the Trimeric HIV Fusion Protein gp41 in Lipid Bilayers Investigated by Solid-State NMR Spectroscopy and Molecular Dynamics Simulations. Journal of Molecular Biology. PMID 32592698 DOI: 10.1016/j.jmb.2020.06.017   
2020 Haralampiev I, de Armiño DJA, Luck M, Fischer M, Abel T, Huster D, Di Lella S, Scheidt HA, Müller P. Interaction of the small-molecule kinase inhibitors tofacitinib and lapatinib with membranes. Biochimica Et Biophysica Acta. Biomembranes. 183414. PMID 32710852 DOI: 10.1016/j.bbamem.2020.183414   
2020 Khmelinskaia A, Marquês JMT, Bastos AEP, Antunes CAC, Bento-Oliveira A, Scolari S, Lobo GMDS, Malhó R, Herrmann A, Marinho HS, de Almeida RFM. Liquid-Ordered Phase Formation by Mammalian and Yeast Sterols: A Common Feature With Organizational Differences. Frontiers in Cell and Developmental Biology. 8: 337. PMID 32596234 DOI: 10.3389/fcell.2020.00337   
2020 Monteiro RT, Andrade FK, Vasconcelos NF, Nogueira KAB, Petrilli R, Vieira RS. Production and characterization of alginate bilayer membranes for releasing simvastatin to treat wounds. Biointerphases. 15: 041002. PMID 32668908 DOI: 10.1116/6.0000167   
2020 Reichl B, Eichelberg N, Freytag M, Gojo J, Peyrl A, Buchberger W. Evaluation and optimization of common lipid extraction methods in cerebrospinal fluid samples. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1153: 122271. PMID 32738523 DOI: 10.1016/j.jchromb.2020.122271   
2020 Bailey-Hytholt CM, Shen T, Nie B, Tripathi A, Shukla A. Placental trophoblast inspired lipid bilayers for cell-free investigation of molecular interactions. Acs Applied Materials & Interfaces. PMID 32558532 DOI: 10.1021/acsami.0c06197   
2020 Deplazes E, Domingo Tafalla B, Cranfield CG, Garcia A. The Role of Ion-Phospholipid Interactions in Zwitterionic Phospholipid Bilayer Ion Permeation. The Journal of Physical Chemistry Letters. PMID 32687371 DOI: 10.1021/acs.jpclett.0c01479   
2020 Faulkner C, Santos-Carballal D, Plant DF, de Leeuw NH. Atomistic Molecular Dynamics Simulations of Propofol and Fentanyl in Phosphatidylcholine Lipid Bilayers. Acs Omega. 5: 14340-14353. PMID 32596571 DOI: 10.1021/acsomega.0c00813   
2020 Anosov AA, Smirnova EY, Sharakshane AA, Nikolayeva EA, Zhdankina YS. Increase in the current variance in bilayer lipid membranes near phase transition as a result of the occurrence of hydrophobic defects. Biochimica Et Biophysica Acta. Biomembranes. 1862: 183147. PMID 31812627 DOI: 10.1016/j.bbamem.2019.183147   
2020 Faugeras V, Duclos O, Bazile D, Thiam AR. Membrane determinants for the passive translocation of analytes through droplet interface bilayers. Soft Matter. PMID 32543614 DOI: 10.1039/d0sm00667j   
2020 Shukla R, Medeiros-Silva J, Parmar A, Vermeulen BJA, Das S, Paioni AL, Jekhmane S, Lorent J, Bonvin AMJJ, Baldus M, Lelli M, Veldhuizen EJA, Breukink E, Singh I, Weingarth M. Mode of action of teixobactins in cellular membranes. Nature Communications. 11: 2848. PMID 32503964 DOI: 10.1038/s41467-020-16600-2   
2020 Ghosh U, Weliky DP. H nuclear magnetic resonance spectroscopy supports larger amplitude fast motion and interference with lipid chain ordering for membrane that contains β sheet human immunodeficiency virus gp41 fusion peptide or helical hairpin influenza virus hemagglutinin fusion peptide at fusogenic pH. Biochimica Et Biophysica Acta. Biomembranes. 183404. PMID 32585207 DOI: 10.1016/j.bbamem.2020.183404   
2020 Martyna A, Bahsoun B, Madsen JJ, Jackson FSJS, Badham MD, Voth GA, Rossman JS. Cholesterol Alters the Orientation and Activity of the Influenza Virus M2 Amphipathic Helix in the Membrane. The Journal of Physical Chemistry. B. PMID 32644803 DOI: 10.1021/acs.jpcb.0c03331   
2020 Salvador-Castell M, Demé B, Oger P, Peters J. Lipid phase separation induced by the apolar polyisoprenoid squalane demonstrates its role in membrane domain formation in archaeal membranes. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 32515591 DOI: 10.1021/acs.langmuir.0c00901   
2020 Li F, Shrivastava IH, Hanlon P, Dagda RK, Gasanoff ES. Molecular Mechanism by which Cobra Venom Cardiotoxins Interact with the Outer Mitochondrial Membrane. Toxins. 12. PMID 32605112 DOI: 10.3390/toxins12070425   
2020 Kim SC, Wang X. Phosphatidic acid: an emerging versatile class of cellular mediators. Essays in Biochemistry. PMID 32602549 DOI: 10.1042/EBC20190089   
2020 Chang YC, Liu HQ, Chang JH, Chang YY, Lin EC. Role of the cholesterol hydroxyl group in the chemical exchange saturation transfer signal at -1.6 ppm. Nmr in Biomedicine. e4356. PMID 32575161 DOI: 10.1002/nbm.4356   
2020 Ulmer CZ, Koelmel JP, Jones CM, Garrett TJ, Aristizabal-Henao JJ, Vesper HW, Bowden JA. A Review of Efforts to Improve Lipid Stability during Sample Preparation and Standardization Efforts to Ensure Accuracy in the Reporting of Lipid Measurements. Lipids. PMID 32519378 DOI: 10.1002/lipd.12263   
2020 Sullivan K, Zhang Y, Lopez J, Lowe M, Noy A. Carbon nanotube porin diffusion in mixed composition supported lipid bilayers. Scientific Reports. 10: 11908. PMID 32681044 DOI: 10.1038/s41598-020-68059-2