Louis Y P Luk - Related publications

Cardiff University, Cardiff, Wales, United Kingdom 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Berta D, Buigues PJ, Badaoui M, Rosta E. Cations in motion: QM/MM studies of the dynamic and electrostatic roles of H and Mg ions in enzyme reactions. Current Opinion in Structural Biology. 61: 198-206. PMID 32065923 DOI: 10.1016/j.sbi.2020.01.002   
2020 Yan L, Liu Y. Retaining mechanism of xylose transfer catalyzed by the xyloside α-1,3-xylosyltransferase (XXYLT1): A QM/MM study. Journal of Chemical Information and Modeling. PMID 32105482 DOI: 10.1021/acs.jcim.9b00976   
2020 Ballal A, Laurendon C, Salmon M, Vardakou M, Cheema J, Defernez M, O'Maille PE, Morozov AV. Sparse epistatic patterns in the evolution of terpene synthases. Molecular Biology and Evolution. PMID 32119077 DOI: 10.1093/molbev/msaa052   
2020 Lukowski AL, Mallik L, Hinze ME, Carlson BM, Ellinwood DC, Pyser JB, Koutmos M, Narayan ARH. Substrate Promiscuity of a Paralytic Shellfish Toxin Amidinotransferase. Acs Chemical Biology. PMID 32058687 DOI: 10.1021/acschembio.9b00964   
2020 Pemberton OA, Noor RE, Kumar M V V, Sanishvili R, Kemp MT, Kearns FL, Woodcock HL, Gelis I, Chen Y. Mechanism of proton transfer in class A β-lactamase catalysis and inhibition by avibactam. Proceedings of the National Academy of Sciences of the United States of America. PMID 32123084 DOI: 10.1073/pnas.1922203117   
2020 Liu X, Wang Y, Chen Y, Xu S, Gong Q, Zhao C, Cao J, Sun C. Characterization of a Flavonoid 3'/5'/7--Methyltransferase from and Evaluation of the In Vitro Cytotoxicity of Its Methylated Products. Molecules (Basel, Switzerland). 25. PMID 32075249 DOI: 10.3390/molecules25040858   
2020 Stevens DR, Hammes-Schiffer S. Examining the Mechanism of Phosphite Dehydrogenase with Quantum Mechanical/Molecular Mechanical Free Energy Simulations. Biochemistry. PMID 32031785 DOI: 10.1021/acs.biochem.9b01089   
2020 Ferrall-Fairbanks MC, Kieslich CA, Platt MO. Reassessing enzyme kinetics: Considering protease-as-substrate interactions in proteolytic networks. Proceedings of the National Academy of Sciences of the United States of America. PMID 31980525 DOI: 10.1073/pnas.1912207117   
2020 Jafari S, Ryde U, Fouda AEA, Alavi FS, Dong G, Irani M. Quantum Mechanics/Molecular Mechanics Study of the Reaction Mechanism of Glyoxalase I. Inorganic Chemistry. PMID 32011880 DOI: 10.1021/acs.inorgchem.9b03621   
2020 Xu X, Zhang W, Berthelet J, Liu R, Michail C, Chaffotte AF, Dupret JM, Rodrigues-Lima F. From transglutaminases (TGs) to arylamine N-acetyltransferases (NATs): Insight into the role of a spatially conserved aromatic amino acid position in the active site of these two families of enzymes. Biochemical and Biophysical Research Communications. PMID 32089267 DOI: 10.1016/j.bbrc.2020.02.082   
2020 Lodola A, Callegari D, Scalvini L, Rivara S, Mor M. Design and SAR Analysis of Covalent Inhibitors Driven by Hybrid QM/MM Simulations. Methods in Molecular Biology (Clifton, N.J.). 2114: 307-337. PMID 32016901 DOI: 10.1007/978-1-0716-0282-9_19   
2020 Ni W, Zheng Z, Liu H, Wang P, Wang H, Sun X, Yang Q, Fang Z, Tang H, Zhao G. Combining mutagenesis on Glu281 of prenyltransferase NovQ and metabolic engineering strategies for the increased prenylated activity towards menadione. Applied Microbiology and Biotechnology. PMID 32125480 DOI: 10.1007/s00253-020-10470-w   
2020 Bassenden AV, Park J, Rodionov D, Berghuis AM. Revisiting the Catalytic Cycle and Kinetic Mechanism of ANT(2″): A Structural and Kinetic Study. Acs Chemical Biology. PMID 32100995 DOI: 10.1021/acschembio.9b00904   
2020 Ding W, Ji X, Zhong Y, Xu K, Zhang Q. Adenosylation reactions catalyzed by the radical S-adenosylmethionine superfamily enzymes. Current Opinion in Chemical Biology. 55: 86-95. PMID 32086168 DOI: 10.1016/j.cbpa.2020.01.007   
2020 Zhou YB, Cao JW, Sun XB, Wang H, Gao DY, Li YN, Wu KY, Wang JK, Qian GY, Wang Q. Enhanced stability of a rumen-derived xylanase using SpyTag/SpyCatcher cyclization. World Journal of Microbiology & Biotechnology. 36: 33. PMID 32060755 DOI: 10.1007/s11274-020-2809-4   
2020 Caputi L, Franke J, Bussey K, Farrow SC, Vieira IJC, Stevenson CEM, Lawson DM, O'Connor SE. Structural basis of cycloaddition in biosynthesis of iboga and aspidosperma alkaloids. Nature Chemical Biology. PMID 32066966 DOI: 10.1038/s41589-019-0460-x   
2020 Cote JM, Hecht CJS, Patel KR, Ramirez-Mondragon CA, Sham YY, Taylor EA. Opposites Attract: Heptosyltransferase I Conformational Changes Induced by Interactions between Substrate and Positively Charged Residues. Biochemistry. PMID 32011131 DOI: 10.1021/acs.biochem.9b01005   
2020 Alnadari F, Xue Y, Zhou L, Hamed YS, Taha M, Foda MF. Immobilization of β-Glucosidase from Thermatoga maritima on Chitin-functionalized Magnetic Nanoparticle via a Novel Thermostable Chitin-binding Domain. Scientific Reports. 10: 1663. PMID 32015452 DOI: 10.1038/s41598-019-57165-5   
2020 Winn M, Richardson SM, Campopiano DJ, Micklefield J. Harnessing and engineering amide bond forming ligases for the synthesis of amides. Current Opinion in Chemical Biology. 55: 77-85. PMID 32058241 DOI: 10.1016/j.cbpa.2019.12.004   
2020 Zhu Y, Zhan J, Zhang Y, Lin Y, Yang X. The K428 residue from SG0.5JP17-16 laccase plays the substantial role in substrate binding and oxidation. Journal of Biomolecular Structure & Dynamics. 1-14. PMID 32056499 DOI: 10.1080/07391102.2020.1729864   
2020 Biswas P, Adhikari A, Pal U, Singh P, Das M, Saha-Dasgupta T, Choudhury SS, Das R, Pal SK. Flexibility modulates the catalytic activity of a thermostable enzyme: key information from optical spectroscopy and molecular dynamics simulation. Soft Matter. PMID 32133476 DOI: 10.1039/c9sm02479d   
2020 Bowman L, Motamed R, Lee P, Aleem K, Berawala AS, Hayden KL, Bzik DJ, Chattopadhyay D. A simple and reliable method for determination of optimum pH in coupled enzyme assays. Biotechniques. PMID 32056453 DOI: 10.2144/btn-2019-0126   
2020 Bharadwaj VS, Knott BC, Ståhlberg J, Beckham GT, Crowley MF. The hydrolysis mechanism of a GH45 cellulase and its potential relation to lytic transglycosylase and expansin function. The Journal of Biological Chemistry. PMID 32054684 DOI: 10.1074/jbc.RA119.011406   
2020 Khandokar Y, Srivastava P, Raidal S, Sarker S, Forwood JK. Structural Basis for Disulphide-CoA Inhibition of a Butyryl-CoA Hexameric Thioesterase. Journal of Structural Biology. 107477. PMID 32027968 DOI: 10.1016/j.jsb.2020.107477   
2020 Sharma V, Kumar S, Sahni G. Kringles of substrate plasminogen provide a "catalytic switch" in plasminogen to plasmin turnover by Streptokinase. The Biochemical Journal. PMID 32069359 DOI: 10.1042/BCJ20190909   
2020 Offenbacher AR, Sharma A, Doan PE, Klinman JP, Hoffman BM. The Soybean Lipoxygenase-Substrate Complex: Correlation between the Properties of Tunneling-Ready States and ENDOR-Detected Structures of Ground States. Biochemistry. PMID 32022556 DOI: 10.1021/acs.biochem.9b00861   
2020 Hosaka Y, Komura S, Andelman D. Shear viscosity of two-state enzyme solutions. Physical Review. E. 101: 012610. PMID 32069562 DOI: 10.1103/PhysRevE.101.012610   
2020 Pitsawong W, Chenprakhon P, Dhammaraj T, Medhanavyn D, Sucharitakul J, Tonsook C, van Berkel WJH, Chaiyen P, Miller AF. Tuning of pKs activates substrates in flavin-dependent aromatic hydroxylases. The Journal of Biological Chemistry. PMID 32014994 DOI: 10.1074/jbc.RA119.011884   
2020 Dang NL, Matlock MK, Hughes TB, Swamidass SJ. The Metabolic Rainbow: Deep Learning Phase I Metabolism in Five Colors. Journal of Chemical Information and Modeling. PMID 32040319 DOI: 10.1021/acs.jcim.9b00836   
2020 Dai G, Tze WTY, Frigo-Vaz B, Calixto Mancipe N, Yang HS, Branciforti MC, Wang P. Nanofibrillated Cellulose-Enzyme Assemblies for Enhanced Biotransformations with In Situ Cofactor Regeneration. Applied Biochemistry and Biotechnology. PMID 32100231 DOI: 10.1007/s12010-020-03263-4   
2020 Li FL, Su WB, Tao QL, Zhang LY, Zhang YW. Expression, biochemical characterization, and mutation of a water forming NADH: FMN oxidoreductase from Lactobacillus rhamnosus. Enzyme and Microbial Technology. 134: 109464. PMID 32044036 DOI: 10.1016/j.enzmictec.2019.109464   
2020 Huang G, Wagner T, Demmer U, Warkentin E, Ermler U, Shima S. The hydride transfer process in NADP dependent methylene-tetrahydromethanopterin dehydrogenase. Journal of Molecular Biology. PMID 32061937 DOI: 10.1016/j.jmb.2020.01.042   
2020 Kumar A, Chandra R. Ligninolytic enzymes and its mechanisms for degradation of lignocellulosic waste in environment. Heliyon. 6: e03170. PMID 32095645 DOI: 10.1016/j.heliyon.2020.e03170   
2020 Huber TD, Clinger JA, Liu Y, Xu W, Miller MD, Phillips GN, Thorson JS. Methionine adenosyltransferase engineering to enable bioorthogonal platforms for AdoMet-utilizing enzymes. Acs Chemical Biology. PMID 32091873 DOI: 10.1021/acschembio.9b00943   
2020 Al-Ghanayem AA, Joseph B. Current prospective in using cold-active enzymes as eco-friendly detergent additive. Applied Microbiology and Biotechnology. PMID 32037467 DOI: 10.1007/s00253-020-10429-x   
2020 Durrani R, Khan FI, Ali S, Wang Y, Yang B. A Thermolabile Phospholipase B from GD-0079: Biochemical Characterization and Structure Dynamics Study. Biomolecules. 10. PMID 32033124 DOI: 10.3390/biom10020231   
2020 Ngu L, Winters JN, Nguyen K, Ramos KE, DeLateur NA, Makowski L, Whitford PC, Ondrechen MJ, Beuning PJ. Probing remote residues important for catalysis in Escherichia coli ornithine transcarbamoylase. Plos One. 15: e0228487. PMID 32027716 DOI: 10.1371/journal.pone.0228487   
2020 Utterback JK, Ruzicka JL, Keller HR, Pellows LM, Dukovic G. Electron Transfer from Semiconductor Nanocrystals to Redox Enzymes. Annual Review of Physical Chemistry. PMID 32074472 DOI: 10.1146/annurev-physchem-050317-014232   
2020 Shah S, Sunder AV, Singh P, Wangikar PP. Characterization and Application of a Robust Glucose Dehydrogenase from for Cofactor Regeneration in Biocatalysis. Indian Journal of Microbiology. 60: 87-95. PMID 32089578 DOI: 10.1007/s12088-019-00834-w   
2020 Fleming SR, Himes PM, Ghodge SV, Goto Y, Suga H, Bowers AA. Exploring the Post-Translational Enzymology of PaaA by mRNA Display. Journal of the American Chemical Society. PMID 32109054 DOI: 10.1021/jacs.0c01576   
2020 Li Y, Pan H, Chang Y, Dong N, Zou L, Liang P, Tian W, Chang Z. Identification of key sites determining the cofactor specificity and improvement of catalytic activity of a steroid 5β-reductase from Capsella rubella. Enzyme and Microbial Technology. 134: 109483. PMID 32044030 DOI: 10.1016/j.enzmictec.2019.109483   
2020 Aganyants H, Weigel P, Hovhannisyan Y, Lecocq M, Koloyan H, Hambardzumyan A, Hovsepyan A, Hallet JN, Sakanyan V. Rational Engineering of the Substrate Specificity of a Thermostable D-Hydantoinase (Dihydropyrimidinase). High-Throughput. 9. PMID 32059545 DOI: 10.3390/ht9010005   
2020 Sakaki K, Ohishi K, Shimizu T, Kobayashi I, Mori N, Matsuda K, Tomita T, Watanabe H, Tanaka K, Kuzuyama T, Nishiyama M. A suicide enzyme catalyzes multiple reactions for biotin biosynthesis in cyanobacteria. Nature Chemical Biology. PMID 32042199 DOI: 10.1038/s41589-019-0461-9   
2020 Zhang X, Xu X, Yao X, Wang R, Tang H, Ju X, Li LZ. Exploring multifunctional residues of ribose-5-phosphate isomerase B from Ochrobactrum sp. CSL1 enhancing isomerization of D-allose. Journal of Agricultural and Food Chemistry. PMID 32100533 DOI: 10.1021/acs.jafc.9b07855   
2020 Abu-Tahon MA, Arafat HH, Isaac GS. Laundry Detergent Compatibility and Dehairing Efficiency of Alkaline Thermostable Protease Produced from Aspergillus terreus under Solid-state Fermentation. Journal of Oleo Science. 69: 241-254. PMID 32115548 DOI: 10.5650/jos.ess19315   
2020 Harrison EH, Kopec RE. Enzymology of vertebrate carotenoid oxygenases. Biochimica Et Biophysica Acta. Molecular and Cell Biology of Lipids. 158653. PMID 32035229 DOI: 10.1016/j.bbalip.2020.158653   
2020 Yao J, Li J, Xiong D, Qiu Y, Shi G, Jin JM, Tao Y, Tang SY. Development of a highly efficient and specific L-theanine synthase. Applied Microbiology and Biotechnology. PMID 32103318 DOI: 10.1007/s00253-020-10482-6   
2020 Ernst HA, Mosbech C, Langkilde AE, Westh P, Meyer AS, Agger JW, Larsen S. The structural basis of fungal glucuronoyl esterase activity on natural substrates. Nature Communications. 11: 1026. PMID 32094331 DOI: 10.1038/s41467-020-14833-9   
2020 Gao J, Ma B, Lu Y, Zhang Y, Tong Y, Guo S, Gao W, Huang L. Investigating the Catalytic Activity of Glycosyltransferase on Quercetin from . Acs Omega. 5: 1414-1421. PMID 32010813 DOI: 10.1021/acsomega.9b02919   
2020 Stoffels P, Müller MJ, Stachurski S, Terfrüchte M, Schröder S, Ihling N, Wierckx N, Feldbrügge M, Schipper K, Büchs J. Complementing the intrinsic repertoire of Ustilago maydis for degradation of the pectin backbone polygalacturonic acid. Journal of Biotechnology. 307: 148-163. PMID 31715206 DOI: 10.1016/j.jbiotec.2019.10.022