Brian W. Matthews, Ph.D., D.Sc. - Publications

Affiliations: 
Molecular Biology University of Oregon, Eugene, OR, United States 
Area:
X-ray crystallography, protein folding
Website:
http://molbio.uoregon.edu/matthews/

250 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Matthews BW. Which of the 100,000 structures in the protein data bank are reliable? Protein Science : a Publication of the Protein Society. 24: 589-91. PMID 25676441 DOI: 10.1002/Pro.2662  1
2013 Matthews BW. The Bragg legacy: early days in macromolecular crystallography. Acta Crystallographica. Section a, Foundations of Crystallography. 69: 34-6. PMID 23250058 DOI: 10.1107/S0108767312042924  1
2012 Juers DH, Matthews BW, Huber RE. LacZ β-galactosidase: structure and function of an enzyme of historical and molecular biological importance. Protein Science : a Publication of the Protein Society. 21: 1792-807. PMID 23011886 DOI: 10.1002/Pro.2165  1
2012 Matthews BW. Proteins under pressure. Proceedings of the National Academy of Sciences of the United States of America. 109: 6792-3. PMID 22529364 DOI: 10.1073/Pnas.1204795109  1
2011 Eijsink VG, Matthews BW, Vriend G. The role of calcium ions in the stability and instability of a thermolysin-like protease. Protein Science : a Publication of the Protein Society. 20: 1346-55. PMID 21648000 DOI: 10.1002/Pro.670  1
2011 Matthews BW. Stoichiometry versus hydrophobicity in protein folding. Journal of Biomolecular Structure & Dynamics. 28: 589-91; discussion 6. PMID 21142227 DOI: 10.1080/073911011010524956  1
2010 Matthews BW. Peripatetic proteins. Protein Science : a Publication of the Protein Society. 19: 1279-80. PMID 20499369 DOI: 10.1002/Pro.422  1
2010 Baase WA, Liu L, Tronrud DE, Matthews BW. Lessons from the lysozyme of phage T4. Protein Science : a Publication of the Protein Society. 19: 631-41. PMID 20095051 DOI: 10.1002/Pro.344  1
2009 Liu L, Marwitz AJ, Matthews BW, Liu SY. Boron mimetics: 1,2-dihydro-1,2-azaborines bind inside a nonpolar cavity of T4 lysozyme. Angewandte Chemie (International Ed. in English). 48: 6817-9. PMID 19688806 DOI: 10.1002/Anie.200903390  1
2009 Liu L, Baase WA, Michael MM, Matthews BW. Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme. Biochemistry. 48: 8842-51. PMID 19663503 DOI: 10.1021/Bi900685J  1
2009 Juers DH, Rob B, Dugdale ML, Rahimzadeh N, Giang C, Lee M, Matthews BW, Huber RE. Direct and indirect roles of His-418 in metal binding and in the activity of beta-galactosidase (E. coli). Protein Science : a Publication of the Protein Society. 18: 1281-92. PMID 19472413 DOI: 10.1002/Pro.140  1
2009 Matthews BW. Racemic crystallography--easy crystals and easy structures: what's not to like? Protein Science : a Publication of the Protein Society. 18: 1135-8. PMID 19472321 DOI: 10.1002/Pro.125  1
2009 Mooers BH, Baase WA, Wray JW, Matthews BW. Contributions of all 20 amino acids at site 96 to the stability and structure of T4 lysozyme. Protein Science : a Publication of the Protein Society. 18: 871-80. PMID 19384988 DOI: 10.1002/Pro.94  1
2009 Mooers BH, Tronrud DE, Matthews BW. Evaluation at atomic resolution of the role of strain in destabilizing the temperature-sensitive T4 lysozyme mutant Arg 96 --> His. Protein Science : a Publication of the Protein Society. 18: 863-70. PMID 19384984 DOI: 10.1002/Pro.93  1
2009 Matthews BW, Liu L. A review about nothing: are apolar cavities in proteins really empty? Protein Science : a Publication of the Protein Society. 18: 494-502. PMID 19241368 DOI: 10.1002/Pro.61  1
2009 Tronrud DE, Matthews BW. Sorting the chaff from the wheat at the PDB. Protein Science : a Publication of the Protein Society. 18: 2-5. PMID 19177345 DOI: 10.1002/Pro.13  1
2009 Liu L, Baase WA, Matthews BW. Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding. Journal of Molecular Biology. 385: 595-605. PMID 19014950 DOI: 10.1016/J.Jmb.2008.10.086  1
2009 Matthews B. Protein Science: Editorial Protein Science. 18: 1. DOI: 10.1002/pro.22  1
2009 Palmer AG, Matthews BW. Interactive graphics return to protein science Protein Science. 18: 677. DOI: 10.1002/Pro.103  1
2008 Ando N, Barstow B, Baase WA, Fields A, Matthews BW, Gruner SM. Structural and thermodynamic characterization of T4 lysozyme mutants and the contribution of internal cavities to pressure denaturation. Biochemistry. 47: 11097-109. PMID 18816066 DOI: 10.1021/Bi801287M  1
2008 Liu L, Quillin ML, Matthews BW. Use of experimental crystallographic phases to examine the hydration of polar and nonpolar cavities in T4 lysozyme. Proceedings of the National Academy of Sciences of the United States of America. 105: 14406-11. PMID 18780783 DOI: 10.1073/Pnas.0806307105  1
2008 Kingston RL, Gay LS, Baase WS, Matthews BW. Structure of the nucleocapsid-binding domain from the mumps virus polymerase; an example of protein folding induced by crystallization. Journal of Molecular Biology. 379: 719-31. PMID 18468621 DOI: 10.1016/J.Jmb.2007.12.080  1
2008 Addlagatta A, Gay L, Matthews BW. Structural basis for the unusual specificity of Escherichia coli aminopeptidase N. Biochemistry. 47: 5303-11. PMID 18416562 DOI: 10.1021/Bi7022333  1
2007 Juers DH, Lovelace J, Bellamy HD, Snell EH, Matthews BW, Borgstahl GE. Changes to crystals of Escherichia coli beta-galactosidase during room-temperature/low-temperature cycling and their relation to cryo-annealing. Acta Crystallographica. Section D, Biological Crystallography. 63: 1139-53. PMID 18007029 DOI: 10.1107/S0907444907045040  1
2007 Matthews BW. Protein Structure Initiative: getting into gear. Nature Structural & Molecular Biology. 14: 459-60. PMID 17549078 DOI: 10.1038/Nsmb0607-459  1
2007 Matthews BW. Five retracted structure reports: inverted or incorrect? Protein Science : a Publication of the Protein Society. 16: 1013-6. PMID 17473006 DOI: 10.1110/Ps.072888607  1
2007 Collins MD, Quillin ML, Hummer G, Matthews BW, Gruner SM. Structural rigidity of a large cavity-containing protein revealed by high-pressure crystallography. Journal of Molecular Biology. 367: 752-63. PMID 17292912 DOI: 10.1016/J.Jmb.2006.12.021  1
2006 Quillin ML, Wingfield PT, Matthews BW. Determination of solvent content in cavities in IL-1beta using experimentally phased electron density. Proceedings of the National Academy of Sciences of the United States of America. 103: 19749-53. PMID 17179045 DOI: 10.1073/Pnas.0609442104  1
2006 Hu X, Addlagatta A, Lu J, Matthews BW, Liu JO. Elucidation of the function of type 1 human methionine aminopeptidase during cell cycle progression. Proceedings of the National Academy of Sciences of the United States of America. 103: 18148-53. PMID 17114291 DOI: 10.1073/Pnas.0608389103  1
2006 Addlagatta A, Gay L, Matthews BW. Structure of aminopeptidase N from Escherichia coli suggests a compartmentalized, gated active site. Proceedings of the National Academy of Sciences of the United States of America. 103: 13339-44. PMID 16938892 DOI: 10.1073/Pnas.0606167103  1
2006 Addlagatta A, Matthews BW. Structure of the angiogenesis inhibitor ovalicin bound to its noncognate target, human Type 1 methionine aminopeptidase. Protein Science : a Publication of the Protein Society. 15: 1842-8. PMID 16823043 DOI: 10.1110/Ps.062278006  1
2006 Hu X, Addlagatta A, Matthews BW, Liu JO. Identification of pyridinylpyrimidines as inhibitors of human methionine aminopeptidases. Angewandte Chemie (International Ed. in English). 45: 3772-5. PMID 16724298 DOI: 10.1002/Anie.200600757  1
2006 Yousef MS, Bischoff N, Dyer CM, Baase WA, Matthews BW. Guanidinium derivatives bind preferentially and trigger long-distance conformational changes in an engineered T4 lysozyme. Protein Science : a Publication of the Protein Society. 15: 853-61. PMID 16600969 DOI: 10.1110/Ps.052020606  1
2006 Sagermann M, Baase WA, Matthews BW. Sequential reorganization of beta-sheet topology by insertion of a single strand. Protein Science : a Publication of the Protein Society. 15: 1085-92. PMID 16597830 DOI: 10.1110/Ps.052018006  1
2006 Wood ZA, Weaver LH, Brown PH, Beckett D, Matthews BW. Co-repressor induced order and biotin repressor dimerization: a case for divergent followed by convergent evolution. Journal of Molecular Biology. 357: 509-23. PMID 16438984 DOI: 10.1016/J.Jmb.2005.12.066  1
2006 Mooers BH, Matthews BW. Extension to 2268 atoms of direct methods in the ab initio determination of the unknown structure of bacteriophage P22 lysozyme. Acta Crystallographica. Section D, Biological Crystallography. 62: 165-76. PMID 16421448 DOI: 10.1107/S0907444905037212  1
2005 Juers DH, Kim J, Matthews BW, Sieburth SM. Structural analysis of silanediols as transition-state-analogue inhibitors of the benchmark metalloprotease thermolysin. Biochemistry. 44: 16524-8. PMID 16342943 DOI: 10.1021/Bi051346V  1
2005 Addlagatta A, Hu X, Liu JO, Matthews BW. Structural basis for the functional differences between type I and type II human methionine aminopeptidases. Biochemistry. 44: 14741-9. PMID 16274222 DOI: 10.1021/Bi051691K  1
2005 Collins MD, Hummer G, Quillin ML, Matthews BW, Gruner SM. Cooperative water filling of a nonpolar protein cavity observed by high-pressure crystallography and simulation. Proceedings of the National Academy of Sciences of the United States of America. 102: 16668-71. PMID 16269539 DOI: 10.1073/Pnas.0508224102  1
2005 Desvaux H, Dubois L, Huber G, Quillin ML, Berthault P, Matthews BW. Dynamics of xenon binding inside the hydrophobic cavity of pseudo-wild-type bacteriophage T4 lysozyme explored through xenon-based NMR spectroscopy. Journal of the American Chemical Society. 127: 11676-83. PMID 16104744 DOI: 10.1021/Ja053074P  1
2005 Matthews BW. The structure of E. coli beta-galactosidase. Comptes Rendus Biologies. 328: 549-56. PMID 15950161 DOI: 10.1016/J.Crvi.2005.03.006  1
2005 Addlagatta A, Quillin ML, Omotoso O, Liu JO, Matthews BW. Identification of an SH3-binding motif in a new class of methionine aminopeptidases from Mycobacterium tuberculosis suggests a mode of interaction with the ribosome. Biochemistry. 44: 7166-74. PMID 15882055 DOI: 10.1021/Bi0501176  1
2005 Yousef MS, Matthews BW. Structural basis of Prospero-DNA interaction: implications for transcription regulation in developing cells. Structure (London, England : 1993). 13: 601-7. PMID 15837198 DOI: 10.1016/J.Str.2005.01.023  1
2005 Ostheimer GJ, Hadjivassiliou H, Hadjivasiliou H, Kloer DP, Barkan A, Matthews BW. Structural analysis of the group II intron splicing factor CRS2 yields insights into its protein and RNA interaction surfaces. Journal of Molecular Biology. 345: 51-68. PMID 15567410 DOI: 10.1016/J.Jmb.2004.10.032  1
2004 Juers DH, Matthews BW. Cryo-cooling in macromolecular crystallography: advantages, disadvantages and optimization. Quarterly Reviews of Biophysics. 37: 105-19. PMID 15999418 DOI: 10.1017/S0033583504004007  1
2004 Mooers BH, Matthews BW. Use of an ion-binding site to bypass the 1000-atom limit to structure determination by direct methods. Acta Crystallographica. Section D, Biological Crystallography. 60: 1726-37. PMID 15388918 DOI: 10.1107/S0907444904017020  1
2004 Dyer CM, Quillin ML, Campos A, Lu J, McEvoy MM, Hausrath AC, Westbrook EM, Matsumura P, Matthews BW, Dahlquist FW. Structure of the constitutively active double mutant CheYD13K Y106W alone and in complex with a FliM peptide. Journal of Molecular Biology. 342: 1325-35. PMID 15351654 DOI: 10.1016/J.Jmb.2004.07.084  1
2004 He MM, Wood ZA, Baase WA, Xiao H, Matthews BW. Alanine-scanning mutagenesis of the beta-sheet region of phage T4 lysozyme suggests that tertiary context has a dominant effect on beta-sheet formation. Protein Science : a Publication of the Protein Society. 13: 2716-24. PMID 15340171 DOI: 10.1110/Ps.04875504  1
2004 Yousef MS, Baase WA, Matthews BW. Use of sequence duplication to engineer a ligand-triggered, long-distance molecular switch in T4 lysozyme. Proceedings of the National Academy of Sciences of the United States of America. 101: 11583-6. PMID 15286283 DOI: 10.1073/Pnas.0404482101  0.84
2004 Kingston RL, Hamel DJ, Gay LS, Dahlquist FW, Matthews BW. Structural basis for the attachment of a paramyxoviral polymerase to its template. Proceedings of the National Academy of Sciences of the United States of America. 101: 8301-6. PMID 15159535 DOI: 10.1073/Pnas.0402690101  1
2004 Wei BQ, Weaver LH, Ferrari AM, Matthews BW, Shoichet BK. Testing a flexible-receptor docking algorithm in a model binding site. Journal of Molecular Biology. 337: 1161-82. PMID 15046985 DOI: 10.1016/J.Jmb.2004.02.015  1
2004 Juers DH, Matthews BW. The role of solvent transport in cryo-annealing of macromolecular crystals. Acta Crystallographica. Section D, Biological Crystallography. 60: 412-21. PMID 14993664 DOI: 10.1107/S0907444903027938  1
2004 Sagermann M, Baase WA, Mooers BH, Gay L, Matthews BW. Relocation or duplication of the helix A sequence of T4 lysozyme causes only modest changes in structure but can increase or decrease the rate of folding. Biochemistry. 43: 1296-301. PMID 14756565 DOI: 10.1021/Bi035702Q  1
2004 Carmel AB, Matthews BW. Crystal structure of the BstDEAD N-terminal domain: a novel DEAD protein from Bacillus stearothermophilus. Rna (New York, N.Y.). 10: 66-74. PMID 14681586 DOI: 10.1261/Rna.5134304  1
2003 Matthews BW. Transformations in structural biology: a personal view. Methods in Enzymology. 368: 3-11. PMID 14674265 DOI: 10.1016/S0076-6879(03)68001-8  1
2003 Juers DH, Hakda S, Matthews BW, Huber RE. Structural basis for the altered activity of Gly794 variants of Escherichia coli beta-galactosidase. Biochemistry. 42: 13505-11. PMID 14621996 DOI: 10.1021/Bi035506J  1
2003 Quillin ML, Matthews BW. Selling candles in a post-Edison world: phasing with noble gases bound within engineered sites. Acta Crystallographica. Section D, Biological Crystallography. 59: 1930-4. PMID 14573947 DOI: 10.1107/S0907444903018018  1
2003 Carmel AB, Matthews BW. Purification, crystallization and preliminary X-ray analysis of the novel DEAD protein BstDEAD from Bacillus stearothermophilus. Acta Crystallographica. Section D, Biological Crystallography. 59: 1869-70. PMID 14501141 DOI: 10.1107/S0907444903018389  1
2003 Mooers BH, Datta D, Baase WA, Zollars ES, Mayo SL, Matthews BW. Repacking the Core of T4 lysozyme by automated design. Journal of Molecular Biology. 332: 741-56. PMID 12963380 DOI: 10.1016/S0022-2836(03)00856-8  1
2003 Sagermann M, Gay L, Matthews BW. Long-distance conformational changes in a protein engineered by modulated sequence duplication. Proceedings of the National Academy of Sciences of the United States of America. 100: 9191-5. PMID 12869697 DOI: 10.1073/Pnas.1633549100  1
2003 Copik AJ, Swierczek SI, Lowther WT, D'souza VM, Matthews BW, Holz RC. Kinetic and spectroscopic characterization of the H178A methionyl aminopeptidase from Escherichia coli. Biochemistry. 42: 6283-92. PMID 12755633 DOI: 10.1021/Bi027327S  1
2003 Gassner NC, Baase WA, Mooers BH, Busam RD, Weaver LH, Lindstrom JD, Quillin ML, Matthews BW. Multiple methionine substitutions are tolerated in T4 lysozyme and have coupled effects on folding and stability. Biophysical Chemistry. 100: 325-40. PMID 12646375 DOI: 10.1016/S0301-4622(02)00290-9  1
2003 Peters RJ, Carter OA, Zhang Y, Matthews BW, Croteau RB. Bifunctional abietadiene synthase: mutual structural dependence of the active sites for protonation-initiated and ionization-initiated cyclizations. Biochemistry. 42: 2700-7. PMID 12614165 DOI: 10.1021/Bi020492N  1
2003 Shoemaker GK, Juers DH, Coombs JM, Matthews BW, Craig DB. Crystallization of beta-galactosidase does not reduce the range of activity of individual molecules. Biochemistry. 42: 1707-10. PMID 12578385 DOI: 10.1021/Bi0204138  1
2002 Zhang XJ, Baase WA, Matthews BW. A helix initiation signal in T4 lysozyme identified by polyalanine mutagenesis. Biophysical Chemistry. 101: 43-56. PMID 12487988 DOI: 10.1016/S0301-4622(02)00193-X  1
2002 Lowther WT, Matthews BW. Metalloaminopeptidases: common functional themes in disparate structural surroundings. Chemical Reviews. 102: 4581-608. PMID 12475202 DOI: 10.1021/Cr0101757  1
2002 Ostheimer GJ, Barkan A, Matthews BW. Crystal structure of E. coli YhbY: a representative of a novel class of RNA binding proteins. Structure (London, England : 1993). 10: 1593-601. PMID 12429100 DOI: 10.1016/S0969-2126(02)00886-9  1
2002 Ryter JM, Doe CQ, Matthews BW. Structure of the DNA binding region of prospero reveals a novel homeo-prospero domain. Structure (London, England : 1993). 10: 1541-9. PMID 12429095 DOI: 10.1016/S0969-2126(02)00883-3  1
2002 Wei BQ, Baase WA, Weaver LH, Matthews BW, Shoichet BK. A model binding site for testing scoring functions in molecular docking. Journal of Molecular Biology. 322: 339-55. PMID 12217695 DOI: 10.1016/S0022-2836(02)00777-5  1
2002 Hausrath AC, Matthews BW. Thermolysin in the absence of substrate has an open conformation. Acta Crystallographica. Section D, Biological Crystallography. 58: 1002-7. PMID 12037302 DOI: 10.1107/S090744490200584X  1
2002 Lowther WT, Weissbach H, Etienne F, Brot N, Matthews BW. The mirrored methionine sulfoxide reductases of Neisseria gonorrhoeae pilB. Nature Structural Biology. 9: 348-52. PMID 11938352 DOI: 10.1038/Nsb783  1
2002 Sagermann M, Matthews BW. Crystal structures of a T4-lysozyme duplication-extension mutant demonstrate that the highly conserved beta-sheet region has low intrinsic folding propensity. Journal of Molecular Biology. 316: 931-40. PMID 11884133 DOI: 10.1006/Jmbi.2001.5376  1
2002 Sagermann M, Mårtensson LG, Baase WA, Matthews BW. A test of proposed rules for helix capping: implications for protein design. Protein Science : a Publication of the Protein Society. 11: 516-21. PMID 11847274 DOI: 10.1110/Ps.39802  1
2002 Weissbach H, Etienne F, Hoshi T, Heinemann SH, Lowther WT, Matthews B, St John G, Nathan C, Brot N. Peptide methionine sulfoxide reductase: structure, mechanism of action, and biological function. Archives of Biochemistry and Biophysics. 397: 172-8. PMID 11795868 DOI: 10.1006/Abbi.2001.2664  1
2002 Quillin ML, Matthews BW. Generation of noble-gas binding sites for crystallographic phasing using site-directed mutagenesis. Acta Crystallographica. Section D, Biological Crystallography. 58: 97-103. PMID 11752783 DOI: 10.1107/S0907444901018145  1
2001 Juers DH, Heightman TD, Vasella A, McCarter JD, Mackenzie L, Withers SG, Matthews BW. A structural view of the action of Escherichia coli (lacZ) beta-galactosidase. Biochemistry. 40: 14781-94. PMID 11732897 DOI: 10.1021/Bi011727I  1
2001 Weaver LH, Kwon K, Beckett D, Matthews BW. Competing protein:protein interactions are proposed to control the biological switch of the E coli biotin repressor. Protein Science : a Publication of the Protein Society. 10: 2618-22. PMID 11714930 DOI: 10.1110/Ps.32701  1
2001 Hausrath AC, Capaldi RA, Matthews BW. The conformation of the epsilon- and gamma-subunits within the Escherichia coli F(1) ATPase. The Journal of Biological Chemistry. 276: 47227-32. PMID 11585832 DOI: 10.1074/Jbc.M107536200  1
2001 Juers DH, Matthews BW. Reversible lattice repacking illustrates the temperature dependence of macromolecular interactions. Journal of Molecular Biology. 311: 851-62. PMID 11518535 DOI: 10.1006/Jmbi.2001.4891  1
2001 Breyer WA, Matthews BW. A structural basis for processivity. Protein Science : a Publication of the Protein Society. 10: 1699-711. PMID 11514661 DOI: 10.1110/Ps.10301  1
2001 Sagermann M, Stevens TH, Matthews BW. Crystal structure of the regulatory subunit H of the V-type ATPase of Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 98: 7134-9. PMID 11416198 DOI: 10.1073/Pnas.131192798  1
2001 Weaver LH, Kwon K, Beckett D, Matthews BW. Corepressor-induced organization and assembly of the biotin repressor: a model for allosteric activation of a transcriptional regulator. Proceedings of the National Academy of Sciences of the United States of America. 98: 6045-50. PMID 11353844 DOI: 10.1073/Pnas.111128198  1
2001 Xu J, Baase WA, Quillin ML, Baldwin EP, Matthews BW. Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme. Protein Science : a Publication of the Protein Society. 10: 1067-78. PMID 11316887 DOI: 10.1110/Ps.02101  0.88
2001 Su AI, Lorber DM, Weston GS, Baase WA, Matthews BW, Shoichet BK. Docking molecules by families to increase the diversity of hits in database screens: computational strategy and experimental evaluation. Proteins. 42: 279-93. PMID 11119652 DOI: 10.1002/1097-0134(20010201)42:2<279::Aid-Prot150>3.0.Co;2-U  1
2000 Breyer WA, Matthews BW. Structure of Escherichia coli exonuclease I suggests how processivity is achieved. Nature Structural Biology. 7: 1125-8. PMID 11101894 DOI: 10.1038/81978  1
2000 Lowther WT, Brot N, Weissbach H, Matthews BW. Structure and mechanism of peptide methionine sulfoxide reductase, an "anti-oxidation" enzyme. Biochemistry. 39: 13307-12. PMID 11063566 DOI: 10.1021/Bi0020269  1
2000 Juers DH, Jacobson RH, Wigley D, Zhang XJ, Huber RE, Tronrud DE, Matthews BW. High resolution refinement of beta-galactosidase in a new crystal form reveals multiple metal-binding sites and provides a structural basis for alpha-complementation. Protein Science : a Publication of the Protein Society. 9: 1685-99. PMID 11045615 DOI: 10.1110/Ps.9.9.1685  1
2000 Quillin ML, Breyer WA, Griswold IJ, Matthews BW. Size versus polarizability in protein-ligand interactions: binding of noble gases within engineered cavities in phage T4 lysozyme. Journal of Molecular Biology. 302: 955-77. PMID 10993735 DOI: 10.1006/Jmbi.2000.4063  1
2000 Quillin ML, Matthews BW. Accurate calculation of the density of proteins. Acta Crystallographica. Section D, Biological Crystallography. 56: 791-4. PMID 10930825 DOI: 10.1107/S090744490000679X  1
2000 He MM, Clugston SL, Honek JF, Matthews BW. Determination of the structure of Escherichia coli glyoxalase I suggests a structural basis for differential metal activation. Biochemistry. 39: 8719-27. PMID 10913283 DOI: 10.1021/Bi000856G  1
2000 Korndörfer IP, Fessner WD, Matthews BW. The structure of rhamnose isomerase from Escherichia coli and its relation with xylose isomerase illustrates a change between inter and intra-subunit complementation during evolution. Journal of Molecular Biology. 300: 917-33. PMID 10891278 DOI: 10.1006/Jmbi.2000.3896  1
2000 Lowther WT, Brot N, Weissbach H, Honek JF, Matthews BW. Thiol-disulfide exchange is involved in the catalytic mechanism of peptide methionine sulfoxide reductase. Proceedings of the National Academy of Sciences of the United States of America. 97: 6463-8. PMID 10841552 DOI: 10.1073/Pnas.97.12.6463  1
2000 Wray JW, Baase WA, Ostheimer GJ, Zhang XJ, Matthews BW. Use of a non-rigid region in T4 lysozyme to design an adaptable metal-binding site. Protein Engineering. 13: 313-21. PMID 10835104 DOI: 10.1093/Protein/13.5.313  1
2000 Sagermann M, Matthews BW. Cloning, expression and crystallization of VMA13p, an essential subunit of the vacuolar H+-ATPase of Saccharomyces cerevisiae. Acta Crystallographica. Section D, Biological Crystallography. 56: 475-7. PMID 10739925 DOI: 10.1107/S0907444900000950  1
2000 Lowther WT, Matthews BW. Structure and function of the methionine aminopeptidases. Biochimica Et Biophysica Acta. 1477: 157-67. PMID 10708856 DOI: 10.1016/S0167-4838(99)00271-X  1
2000 Rupert PB, Mollah AK, Mossing MC, Matthews BW. The structural basis for enhanced stability and reduced DNA binding seen in engineered second-generation Cro monomers and dimers. Journal of Molecular Biology. 296: 1079-90. PMID 10686105 DOI: 10.1006/jmbi.1999.3498  1
2000 Korndörfer IP, Salerno J, Jing D, Matthews BW. Crystallization and preliminary X-ray analysis of a bacteriophage T4 primase fragment. Acta Crystallographica. Section D, Biological Crystallography. 56: 95-7. PMID 10666640 DOI: 10.1107/S0907444999014225  1
2000 Liu R, Baase WA, Matthews BW. The introduction of strain and its effects on the structure and stability of T4 lysozyme. Journal of Molecular Biology. 295: 127-45. PMID 10623513 DOI: 10.1006/Jmbi.1999.3300  1
2000 Yang G, Cecconi C, Baase WA, Vetter IR, Breyer WA, Haack JA, Matthews BW, Dahlquist FW, Bustamante C. Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme. Proceedings of the National Academy of Sciences of the United States of America. 97: 139-44. PMID 10618384 DOI: 10.1073/Pnas.97.1.139  1
1999 Gassner NC, Matthews BW. Use of differentially substituted selenomethionine proteins in X-ray structure determination. Acta Crystallographica. Section D, Biological Crystallography. 55: 1967-70. PMID 10666571 DOI: 10.1107/S0907444999013347  1
1999 Hausrath AC, Grüber G, Matthews BW, Capaldi RA. Structural features of the gamma subunit of the Escherichia coli F(1) ATPase revealed by a 4.4-A resolution map obtained by x-ray crystallography. Proceedings of the National Academy of Sciences of the United States of America. 96: 13697-702. PMID 10570135 DOI: 10.1073/Pnas.96.24.13697  1
1999 Gassner NC, Baase WA, Hausrath AC, Matthews BW. Substitution with selenomethionine can enhance the stability of methionine-rich proteins. Journal of Molecular Biology. 294: 17-20. PMID 10556025 DOI: 10.1006/Jmbi.1999.3220  1
1999 Lowther WT, Zhang Y, Sampson PB, Honek JF, Matthews BW. Insights into the mechanism of Escherichia coli methionine aminopeptidase from the structural analysis of reaction products and phosphorus-based transition-state analogues. Biochemistry. 38: 14810-9. PMID 10555963 DOI: 10.1021/Bi991711G  1
1999 Gassner NC, Baase WA, Lindstrom JD, Lu J, Dahlquist FW, Matthews BW. Methionine and alanine substitutions show that the formation of wild-type-like structure in the carboxy-terminal domain of T4 lysozyme is a rate-limiting step in folding. Biochemistry. 38: 14451-60. PMID 10545167 DOI: 10.1021/Bi9915519  1
1999 Wray JW, Baase WA, Lindstrom JD, Weaver LH, Poteete AR, Matthews BW. Structural analysis of a non-contiguous second-site revertant in T4 lysozyme shows that increasing the rigidity of a protein can enhance its stability. Journal of Molecular Biology. 292: 1111-20. PMID 10512706 DOI: 10.1006/Jmbi.1999.3102  1
1999 Kovall RA, Matthews BW. Type II restriction endonucleases: structural, functional and evolutionary relationships. Current Opinion in Chemical Biology. 3: 578-83. PMID 10508668 DOI: 10.1016/S1367-5931(99)00012-5  1
1999 Kuroki R, Weaver LH, Matthews BW. Structural basis of the conversion of T4 lysozyme into a transglycosidase by reengineering the active site. Proceedings of the National Academy of Sciences of the United States of America. 96: 8949-54. PMID 10430876 DOI: 10.1073/Pnas.96.16.8949  1
1999 Lowther WT, Orville AM, Madden DT, Lim S, Rich DH, Matthews BW. Escherichia coli methionine aminopeptidase: implications of crystallographic analyses of the native, mutant, and inhibited enzymes for the mechanism of catalysis. Biochemistry. 38: 7678-88. PMID 10387007 DOI: 10.1021/Bi990684R  1
1999 Sagermann M, Baase WA, Matthews BW. Structural characterization of an engineered tandem repeat contrasts the importance of context and sequence in protein folding. Proceedings of the National Academy of Sciences of the United States of America. 96: 6078-83. PMID 10339544 DOI: 10.1073/Pnas.96.11.6078  1
1999 Juers DH, Huber RE, Matthews BW. Structural comparisons of TIM barrel proteins suggest functional and evolutionary relationships between beta-galactosidase and other glycohydrolases. Protein Science : a Publication of the Protein Society. 8: 122-36. PMID 10210191 DOI: 10.1110/Ps.8.1.122  1
1998 Kuroki R, Morimoto K, Matthews BW. Converting T4 phage lysozyme into a transglycosidase. Annals of the New York Academy of Sciences. 864: 362-5. PMID 9928113 DOI: 10.1111/J.1749-6632.1998.Tb10340.X  1
1998 Lowther WT, McMillen DA, Orville AM, Matthews BW. The anti-angiogenic agent fumagillin covalently modifies a conserved active-site histidine in the Escherichia coli methionine aminopeptidase. Proceedings of the National Academy of Sciences of the United States of America. 95: 12153-7. PMID 9770455 DOI: 10.1073/pnas.95.21.12153  1
1998 Albright RA, Mossing MC, Matthews BW. Crystal structure of an engineered Cro monomer bound nonspecifically to DNA: possible implications for nonspecific binding by the wild-type protein. Protein Science : a Publication of the Protein Society. 7: 1485-94. PMID 9684880 DOI: 10.1002/Pro.5560070701  1
1998 Kovall RA, Matthews BW. Structural, functional, and evolutionary relationships between lambda-exonuclease and the type II restriction endonucleases. Proceedings of the National Academy of Sciences of the United States of America. 95: 7893-7. PMID 9653111 DOI: 10.1073/Pnas.95.14.7893  1
1998 Albright RA, Matthews BW. Crystal structure of lambda-Cro bound to a consensus operator at 3.0 A resolution. Journal of Molecular Biology. 280: 137-51. PMID 9653037 DOI: 10.1006/Jmbi.1998.1848  1
1998 Ohlendorf DH, Tronrud DE, Matthews BW. Refined structure of Cro repressor protein from bacteriophage lambda suggests both flexibility and plasticity. Journal of Molecular Biology. 280: 129-36. PMID 9653036 DOI: 10.1006/jmbi.1998.1849  1
1998 Rupert PB, Daughdrill GW, Bowerman B, Matthews BW. A new DNA-binding motif in the Skn-1 binding domain-DNA complex. Nature Structural Biology. 5: 484-91. PMID 9628487 DOI: 10.1038/Nsb0698-484  1
1998 Lipscomb LA, Gassner NC, Snow SD, Eldridge AM, Baase WA, Drew DL, Matthews BW. Context-dependent protein stabilization by methionine-to-leucine substitution shown in T4 lysozyme. Protein Science : a Publication of the Protein Society. 7: 765-73. PMID 9541409 DOI: 10.1002/pro.5560070326  1
1998 Albright RA, Matthews BW. How Cro and lambda-repressor distinguish between operators: the structural basis underlying a genetic switch. Proceedings of the National Academy of Sciences of the United States of America. 95: 3431-6. PMID 9520383 DOI: 10.1073/Pnas.95.7.3431  1
1998 Baldwin E, Baase WA, Zhang Xj, Feher V, Matthews BW. Generation of ligand binding sites in T4 lysozyme by deficiency-creating substitutions. Journal of Molecular Biology. 277: 467-85. PMID 9514755 DOI: 10.1006/Jmbi.1997.1606  1
1998 Xu J, Baase WA, Baldwin E, Matthews BW. The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect. Protein Science : a Publication of the Protein Society. 7: 158-77. PMID 9514271 DOI: 10.1002/Pro.5560070117  1
1997 Kovall R, Matthews BW. Toroidal structure of lambda-exonuclease. Science (New York, N.Y.). 277: 1824-7. PMID 9295273 DOI: 10.1126/Science.277.5333.1824  1
1997 Beckett D, Matthews BW. Escherichia coli repressor of biotin biosynthesis. Methods in Enzymology. 279: 362-76. PMID 9211289 DOI: 10.1016/S0076-6879(97)79041-4  1
1997 Gassner NC, Baase WA, Lindstrom JD, Shoichet BK, Matthews BW. Isolation and characterization of multiple-methionine mutants of T4 lysozyme with simplified cores Techniques in Protein Chemistry. 8: 851-863. DOI: 10.1016/S1080-8914(97)80082-8  1
1996 Weaver L, Stagsted J, Behnke O, Matthews BW, Olsson L. Beta-sheet models for the ordered filamentous structure formed by a peptide that enhances the action of insulin. Journal of Structural Biology. 117: 165-72. PMID 8986646 DOI: 10.1006/Jsbi.1996.0080  1
1996 Vetter IR, Baase WA, Heinz DW, Xiong JP, Snow S, Matthews BW. Protein structural plasticity exemplified by insertion and deletion mutants in T4 lysozyme. Protein Science : a Publication of the Protein Society. 5: 2399-415. PMID 8976549 DOI: 10.1002/Pro.5560051203  1
1996 Morimoto K, Kuroki R, Matthews BW. Control of the catalytic mechanism of an enzyme by amino acid substitution. Annals of the New York Academy of Sciences. 799: 56-60. PMID 8958073 DOI: 10.1111/J.1749-6632.1996.Tb33177.X  1
1996 Gassner NC, Baase WA, Matthews BW. A test of the "jigsaw puzzle" model for protein folding by multiple methionine substitutions within the core of T4 lysozyme. Proceedings of the National Academy of Sciences of the United States of America. 93: 12155-8. PMID 8901549 DOI: 10.1073/Pnas.93.22.12155  1
1996 Baldwin E, Xu J, Hajiseyedjavadi O, Baase WA, Matthews BW. Thermodynamic and structural compensation in "size-switch" core repacking variants of bacteriophage T4 lysozyme. Journal of Molecular Biology. 259: 542-59. PMID 8676387 DOI: 10.1006/Jmbi.1996.0338  1
1996 Matthews BW. Structural and genetic analysis of the folding and function of T4 lysozyme. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 10: 35-41. PMID 8566545 DOI: 10.1096/Fasebj.10.1.8566545  1
1996 Albright RA, Mossing MC, Matthews BW. High-resolution structure of an engineered Cro monomer shows changes in conformation relative to the native dimer. Biochemistry. 35: 735-42. PMID 8547253 DOI: 10.1021/Bi951958N  1
1995 Zhang XJ, Baase WA, Shoichet BK, Wilson KP, Matthews BW. Enhancement of protein stability by the combination of point mutations in T4 lysozyme is additive. Protein Engineering. 8: 1017-22. PMID 8771182 DOI: 10.1093/Protein/8.10.1017  1
1995 Holland DR, Hausrath AC, Juers D, Matthews BW. Structural analysis of zinc substitutions in the active site of thermolysin. Protein Science : a Publication of the Protein Society. 4: 1955-65. PMID 8535232 DOI: 10.1002/Pro.5560041001  1
1995 Matthews BW, Morton AG, Dahlquist FW. Use of NMR to detect water within nonpolar protein cavities. Science (New York, N.Y.). 270: 1847-9. PMID 8525384 DOI: 10.1126/Science.270.5243.1847  1
1995 Blaber M, Baase WA, Gassner N, Matthews BW. Alanine Scanning Mutagenesis of the α-Helix 115-123 of Phage T4 Lysozyme: Effects on Structure, Stability and the Binding of Solvent Journal of Molecular Biology. 246: 317-330. PMID 7869383 DOI: 10.1006/Jmbi.1994.0087  1
1995 Shoichet BK, Baase WA, Kuroki R, Matthews BW. A relationship between protein stability and protein function. Proceedings of the National Academy of Sciences of the United States of America. 92: 452-6. PMID 7831309 DOI: 10.1073/Pnas.92.2.452  1
1995 Weaver LH, Grütter MG, Matthews BW. The refined structures of goose lysozyme and its complex with a bound trisaccharide show that the "Goose-type" ly'sozymes lack a catalytic aspartate residue Journal of Molecular Biology. 245: 54-68. PMID 7823320 DOI: 10.1016/S0022-2836(95)80038-7  1
1995 Matthews BW. Studies on protein stability with T4 lysozyme Advances in Protein Chemistry. 46: 249-278. PMID 7771320 DOI: 10.1016/S0065-3233(08)60337-X  1
1995 Matthews BW. Can proteins be turned inside-out? Nature Structural Biology. 2: 85-86. PMID 7749923 DOI: 10.1038/Nsb0295-85  1
1995 Arfin SM, Kendall RL, Hall L, Weaver LH, Stewart AE, Matthews BW, Bradshaw RA. Eukaryotic methionyl aminopeptidases: Two classes of cobalt-dependent enzymes Proceedings of the National Academy of Sciences of the United States of America. 92: 7714-7718. PMID 7644482 DOI: 10.1073/Pnas.92.17.7714  1
1995 Zhang XJ, Wozniak JA, Matthews BW. Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme. Journal of Molecular Biology. 250: 527-52. PMID 7616572 DOI: 10.1006/Jmbi.1995.0396  1
1995 Morton A, Matthews BW. Specificity of ligand binding in a buried nonpolar cavity of T4 lysozyme: linkage of dynamics and structural plasticity. Biochemistry. 34: 8576-88. PMID 7612599 DOI: 10.1021/Bi00027A007  1
1995 Morton A, Baase WA, Matthews BW. Energetic origins of specificity of ligand binding in an interior nonpolar cavity of T4 lysozyme. Biochemistry. 34: 8564-75. PMID 7612598 DOI: 10.1021/Bi00027A006  1
1995 Kuroki R, Weaver LH, Matthews BW. Structure-based design of a lysozyme with altered catalytic activity. Nature Structural Biology. 2: 1007-11. PMID 7583653 DOI: 10.1038/Nsb1195-1007  1
1995 Zhang Xue-Jun, Matthews BW. EDPDB: A multifunctional tool for protein structure analysis Journal of Applied Crystallography. 28: 624-630. DOI: 10.1107/S0021889895001063  1
1994 Blaber M, Zhang XJ, Lindstrom JD, Pepiot SD, Baase WA, Matthews BW. Determination of α-helix propensity within the context of a folded protein: Sites 44 and 131 in bacteriophage T4 lysozyme Journal of Molecular Biology. 235: 600-624. PMID 8289284 DOI: 10.1006/Jmbi.1994.1016  1
1994 Holland DR, Barclay PL, Danilewicz JC, Matthews BW, James K. Inhibition of thermolysin and neutral endopeptidase 24.11 by a novel glutaramide derivative: X-ray structure determination of the thermolysin-inhibitor complex. Biochemistry. 33: 51-6. PMID 8286362  1
1994 Holland DR, Cousens LS, Meng W, Matthews BW. Nerve growth factor in different crystal forms displays structural flexibility and reveals zinc binding sites Journal of Molecular Biology. 239: 385-400. PMID 8201620 DOI: 10.1006/Jmbi.1994.1380  1
1994 Matthews BW, Craik CS, Neurath H. Can small cyclic peptides have the activity and specificity of proteolytic enzymes? Proceedings of the National Academy of Sciences of the United States of America. 91: 4103-5. PMID 8183878 DOI: 10.1073/Pnas.91.10.4103  1
1994 Heinz DW, Matthews BW. Rapid crystallization of T4 lysozyme by intermolecular disulphide cross-linking Protein Engineering. 7: 301-307. PMID 8177878 DOI: 10.1093/Protein/7.3.301  1
1994 Bazan JF, Weaver LH, Roderick SL, Huber R, Matthews BW. Sequence and structure comparison suggest that methionine aminopeptidase, prolidase, aminopeptidase P, and creatinase share a common fold Proceedings of the National Academy of Sciences of the United States of America. 91: 2473-2477. PMID 8146141 DOI: 10.1073/Pnas.91.7.2473  1
1994 Heinz DW, Baase WA, Zhang XJ, Blaber M, Dahlquist FW, Matthews BW. Accommodation of amino acid insertions in an alpha-helix of T4 lysozyme. Structural and thermodynamic analysis. Journal of Molecular Biology. 236: 869-86. PMID 8114100 DOI: 10.1006/Jmbi.1994.1195  1
1994 Hausrath AC, Matthews BW. Redetermination and refinement of the complex of benzylsuccinic acid with thermolysin and its relation to the complex with carboxypeptidase A. The Journal of Biological Chemistry. 269: 18839-42. PMID 8034637 DOI: 10.2210/Pdb1Hyt/Pdb  1
1994 Jacobson RH, Zhang XJ, DuBose RF, Matthews BW. Three-dimensional structure of β-galactosidase from E. coli Nature. 369: 761-766. PMID 8008071 DOI: 10.1038/369761A0  1
1994 Zhang NJ, Matthews BW. Conservation of solvent-binding sites in 10 crystal forms of T4 lysozyme Protein Science. 3: 1031-1039. PMID 7920248 DOI: 10.1002/Pro.5560030705  1
1994 Baldwin EP, Matthews BW. Core-packing constraints, hydrophobicity and protein design. Current Opinion in Biotechnology. 5: 396-402. PMID 7765172 DOI: 10.1016/0958-1669(94)90048-5  0.88
1994 Morgan BP, Holland DR, Matthews BW, Bartlett PA. Structure-based design of an inhibitor of the zinc peptidase thermolysin Journal of the American Chemical Society. 116: 3251-3260. DOI: 10.1021/Ja00087A010  1
1993 Blaber M, Zhang XJ, Matthews BW. Structural basis of amino acid α helix propensity Science. 260: 1637-1640. PMID 8503008 DOI: 10.1126/Science.8503008  1
1993 Pjura P, McIntosh LP, Wozniak JA, Matthews BW. Perturbation of Trp 138 in T4 lysozyme by mutations at Gln 105 used to correlate changes in structure, stability, solvation, and spectroscopic properties Proteins: Structure, Function and Genetics. 15: 401-412. PMID 8460110 DOI: 10.1002/Prot.340150407  1
1993 Eriksson AE, Baase WA, Matthews BW. Similar hydrophobic replacements of Leu99 and Phe153 within the core of T4 lysozyme have different structural and thermodynamic consequences Journal of Molecular Biology. 229: 747-769. PMID 8433369 DOI: 10.1006/Jmbi.1993.1077  1
1993 Heinz DW, Baase WA, Dahlquist FW, Matthews BW. How amino-acid insertions are allowed in an alpha-helix of T4 lysozyme. Nature. 361: 561-4. PMID 8429913 DOI: 10.1038/361561A0  1
1993 Anderson DE, Hurley JH, Nicholson H, Baase WA, Matthews BW. Hydrophobic core repacking and aromatic-aromatic interaction in the thermostable mutant of T4 lysozyme Ser 117 → Phe Protein Science. 2: 1285-1290. PMID 8401213 DOI: 10.1002/Pro.5560020811  1
1993 Stagsted J, Mapelli C, Meyers C, Matthews BW, Anfinsen CB, Goldstein A, Olsson L. Amino acid residues essential for biological activity of a peptide derived from a major histocompatibility complex class I antigen. Proceedings of the National Academy of Sciences of the United States of America. 90: 7686-90. PMID 8356070 DOI: 10.1073/Pnas.90.16.7686  1
1993 Matthews BW. Structural and genetic analysis of protein stability Annual Review of Biochemistry. 62: 139-160. PMID 8352587 DOI: 10.1146/Annurev.Bi.62.070193.001035  1
1993 Kuroki R, Weaver LH, Matthews BW. A covalent enzyme-substrate intermediate with saccharide distortion in a mutant T4 lysozyme Science. 262: 2030-2033. PMID 8266098 DOI: 10.1126/Science.8266098  1
1993 Baldwin EP, Hajiseyedjavadi O, Baase WA, Matthews BW. The role of backbone flexibility in the accommodation of variants that repack the core of T4 lysozyme. Science (New York, N.Y.). 262: 1715-8. PMID 8259514 DOI: 10.1126/Science.8259514  0.88
1993 Shortle D, Clarke N, Blaber M, Zhang XJ, Matthews BW. Alpha helix propensity of amino acids Science. 262: 917-918. PMID 8235616  1
1993 Blaber M, Lindstrom JD, Gassner N, Xu J, Heinz DW, Matthews BW. Energetic cost and structural consequences of burying a hydroxyl group within the core of a protein determined from Ala → Ser and Val → Thr substitutions in T4 lysozyme Biochemistry. 32: 11363-11373. PMID 8218201 DOI: 10.1021/Bi00093A013  1
1993 Eriksson AE, Cousens LS, Matthews BW. Refinement of the structure of human basic fibroblast growth factor at 1.6 Å resolution and analysis of presumed heparin binding sites by selenate substitution Protein Science. 2: 1274-1284. PMID 7691311 DOI: 10.1002/Pro.5560020810  1
1993 Pjura P, Matsumura M, Baase WA, Matthews BW. Development of an in vivo method to identify mutants of phage T4 lysozyme of enhanced thermostability Protein Science. 2: 2217-2225. PMID 7507755 DOI: 10.1002/Pro.5560021221  1
1993 Matthews BW. Structural and genetic analysis of protein folding and stability. Current Opinion in Sturctural Biology 1993, 3:589-593 Current Opinion in Structural Biology. 3: 589-593. DOI: 10.1016/0959-440X(93)90088-3  1
1993 DeGrado WF, Matthews BW. Engineering and design Current Opinion in Structural Biology. 3: 547-548. DOI: 10.1016/0959-440X(93)90081-U  1
1993 Pjura P, Matthews BW. Structures of randomly generated mutants of T4 lysozyme show that protein stability can be enhanced by relaxation of strain and by improved hydrogen bonding via bound solvent Protein Science. 2: 226-232. DOI: 10.1002/Pro.5560021222  1
1992 Eriksson AE, Baase WA, Wozniak JA, Matthews BW. A cavity-containing mutant of T4 lysozyme is stabilized by buried benzene. Nature. 355: 371-3. PMID 1731252 DOI: 10.1038/355371A0  1
1992 Hurley JH, Baase WA, Matthews BW. Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme. Journal of Molecular Biology. 224: 1143-59. PMID 1569571 DOI: 10.1016/0022-2836(92)90475-Y  0.84
1992 Bell JA, Becktel WJ, Sauer U, Baase WA, Matthews BW. Dissection of helix capping in T4 lysozyme by structural and thermodynamic analysis of six amino acid substitutions at Thr 59 Biochemistry®. 31: 3590-3596. PMID 1567817 DOI: 10.2210/Pdb1Lyh/Pdb  1
1992 Eriksson AE, Baase WA, Zhang XJ, Heinz DW, Blaber M, Baldwin EP, Matthews BW. Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect. Science (New York, N.Y.). 255: 178-83. PMID 1553543 DOI: 10.1126/Science.1553543  0.88
1992 Jacobson RH, Matthews BW. Crystallization of beta-galactosidase from Escherichia coli. Journal of Molecular Biology. 223: 1177-82. PMID 1538395 DOI: 10.1016/0022-2836(92)90269-P  0.52
1992 Tronrud DE, Roderick SL, Matthews BW. Structural basis for the action of thermolysin Matrix (Stuttgart, Germany). Supplement. 1: 107-111. PMID 1480010  1
1992 Hurley JH, Mason DA, Matthews BW. Flexible-geometry conformational energy maps for the amino acid residue preceding a proline. Biopolymers. 32: 1443-6. PMID 1457725 DOI: 10.1002/Bip.360321104  0.64
1992 Holland DR, Tronrud DE, Pley HW, Flaherty KM, Stark W, Jansonius JN, McKay DB, Matthews BW. Structural comparison suggests that thermolysin and related neutral proteases undergo hinge-bending motion during catalysis. Biochemistry. 31: 11310-6. PMID 1445869 DOI: 10.1021/Bi00161A008  1
1992 Wilson KP, Shewchuk LM, Brennan RG, Otsuka AJ, Matthews BW. Escherichia coli biotin holoenzyme synthetase/bio repressor crystal structure delineates the biotin- and DNA-binding domains. Proceedings of the National Academy of Sciences of the United States of America. 89: 9257-61. PMID 1409631 DOI: 10.1073/Pnas.89.19.9257  1
1992 Zhang XJ, Baase WA, Matthews BW. Multiple alanine replacements within α-helix 126-134 of T4 lysozyme have independent, additive effects on both structure and stability Protein Science. 1: 761-776. PMID 1304917 DOI: 10.1002/Pro.5560010608  1
1992 Jacobson RH, Matsumura M, Faber HR, Matthews BW. Structure of a stabilizing disulfide bridge mutant that closes the active- site cleft of T4 lysozyme Protein Science. 1: 46-57. PMID 1304882 DOI: 10.1002/Pro.5560010106  1
1992 Baase WA, Eriksson AE, Zhang XJ, Heinz DW, Sauer U, Blaber M, Baldwin EP, Wozniak JA, Matthews BW. Dissection of protein structure and folding by directed mutagenesis. Faraday Discussions. 173-81. PMID 1290931 DOI: 10.1039/Fd9929300173  1
1992 Schulz GE, Johnson LN, Sinnott ML, Perutz M, Taylor SS, Karplus M, Ohta T, Edwards PN, Blow DM, Thornton J, Fersht AR, Warshel A, Buckingham AD, Eisenberg D, Dodson GG, ... ... Matthews BW, et al. General discussion Faraday Discussions. 93: 195-215. DOI: 10.1039/FD9929300195  1
1991 Dao-pin S, Söderlind E, Baase WA, Wozniak JA, Sauer U, Matthews BW. Cumulative site-directed charge-change replacements in bacteriophage T4 lysozyme suggest that long-range electrostatic interactions contribute little to protein stability. Journal of Molecular Biology. 221: 873-87. PMID 1942034 DOI: 10.1016/0022-2836(91)80181-S  1
1991 Daopin S, Alber T, Baase WA, Wozniak JA, Matthews BW. Structural and thermodynamic analysis of the packing of two α-helices in bacteriophage T4 lysozyme Journal of Molecular Biology. 221: 647-667. PMID 1920439 DOI: 10.1016/0022-2836(91)80079-A  1
1991 Dixon MM, Brennan RG, Matthews BW. Structure of γ-chymotrypsin in the range pH 2.0 to pH 10.5 suggests that γ-chymotrypsin is a covalent acyl-enzyme adduct at low pH International Journal of Biological Macromolecules. 13: 89-96. PMID 1888717 DOI: 10.1016/0141-8130(91)90054-X  1
1991 Dao-pin S, Nicholson H, Baase WA, Zhang XJ, Wozniak JA, Matthews BW. Structural and genetic analysis of electrostatic and other interactions in bacteriophage T4 lysozyme. Ciba Foundation Symposium. 161: 52-62. PMID 1814696 DOI: 10.1002/9780470514146.ch4  1
1991 Dao-pin S, Anderson DE, Baase WA, Dahlquist FW, Matthews BW. Structural and thermodynamic consequences of burying a charged residue within the hydrophobic core of T4 lysozyme. Biochemistry. 30: 11521-9. PMID 1747370 DOI: 10.1021/Bi00113A006  0.84
1990 Pjura PE, Matsumura M, Wozniak JA, Matthews BW. Structure of a thermostable disulfide-bridge mutant of phage T4 lysozyme shows that an engineered cross-link in a flexible region does not increase the rigidity of the folded protein. Biochemistry. 29: 2592-8. PMID 2334683 DOI: 10.1021/Bi00462A023  1
1990 Faber HR, Matthews BW. A mutant T4 lysozyme displays five different crystal conformations. Nature. 348: 263-6. PMID 2234094 DOI: 10.1038/348263A0  0.36
1990 Brennan RG, Roderick SL, Takeda Y, Matthews BW. Protein-DNA conformational changes in the crystal structure of a λ Cro-operator complex Proceedings of the National Academy of Sciences of the United States of America. 87: 8165-8169. PMID 2146682 DOI: 10.1073/Pnas.87.20.8165  1
1990 Matthews BW. Crystallography in the Life Sciences Crystallography Reviews. 2: 133-158. DOI: 10.1080/08893119008032953  1
1990 Wozniak JA, Faber HR, Dao-pin S, Zhang XJ, Matthews BW. Crystallization of designed protein variants Methods. 1: 100-104. DOI: 10.1016/S1046-2023(05)80152-5  1
1989 Roderick SL, Fournie-Zaluski MC, Roques BP, Matthews BW. Thiorphan and retro-thiorphan display equivalent interactions when bound to crystalline thermolysin Biochemistry. 28: 1493-1497. PMID 2719912 DOI: 10.1021/bi00430a011  1
1989 Brennan RG, Matthews BW. Structural basis of DNA-protein recognition Trends in Biochemical Sciences. 14: 286-290. PMID 2672451 DOI: 10.1016/0968-0004(89)90066-2  1
1989 Weaver LH, Gray TM, Grütter MG, Anderson DE, Wozniak JA, Dahlquist FW, Matthews BW. High-resolution structure of the temperature-sensitive mutant of phage lysozyme, Arg 96----His. Biochemistry. 28: 3793-7. PMID 2665808 DOI: 10.1021/Bi00435A025  1
1988 Matthews BW. No code for recognition Nature. 335: 294-295. PMID 3419498 DOI: 10.1038/335294a0  1
1988 Holden HM, Matthews BW. The binding of L-valyl-L-tryptophan to crystalline thermolysin illustrates the mode of interaction of a product of peptide hydrolysis Journal of Biological Chemistry. 263: 3256-3260. PMID 3343246 DOI: 10.2210/Pdb3Tmn/Pdb  1
1988 Alber T, Bell JA, Dao-Pin S, Nicholson H, Wozniak JA, Cook S, Matthews BW. Replacements of Pro86 in phage T4 lysozyme extend an α-helix but do not alter protein stability Science. 239: 631-635. PMID 3277275 DOI: 10.1126/Science.3277275  1
1988 Remington SJ, Woodbury RG, Reynolds RA, Matthews BW, Neurath H. The structure of rat mast cell protease II at 1.9-A resolution. Biochemistry. 27: 8097-105. PMID 3233198 DOI: 10.1021/Bi00421A019  1
1988 Brennan RG, Wozniak J, Faber R, Matthews BW. Crystallization of mutant lysozymes from bacteriophage T4 Journal of Crystal Growth. 90: 160-167. DOI: 10.1016/0022-0248(88)90311-9  1
1987 Tronrud DE, Holden HM, Matthews BW. Structures of two thermolysin-inhibitor complexes that differ by a single hydrogen bond Science. 235: 571-574. PMID 3810156 DOI: 10.1126/Science.3810156  1
1987 Grütter MG, Gray TM, Weaver LH, Alber T, Wilson K, Matthews BW. Structural studies of mutants of the lysozyme of bacteriophage T4. The temperature-sensitive mutant protein Thr157 → Ile Journal of Molecular Biology. 197: 315-329. PMID 3681997 DOI: 10.1016/0022-2836(87)90126-4  1
1987 Alber T, Sun DP, Nye JA, Muchmore DC, Matthews BW. Temperature-sensitive mutations of bacteriophage T4 lysozyme occur at sites with low mobility and low solvent accessibility in the folded protein. Biochemistry. 26: 3754-8. PMID 3651410 DOI: 10.1021/Bi00387A002  1
1987 Dao-Pin S, Alber T, Bell JA, Weaver LH, Matthews BW. Use of site-directed mutagenesis to obtain isomorphous heavy-atom derivatives for protein crystallography: Cysteine-containing mutants of phage t4 lysozyme Protein Engineering, Design and Selection. 1: 115-123. PMID 3507694 DOI: 10.1093/Protein/1.2.115  1
1987 Holden HM, Tronrud DE, Monzingo AF, Weaver LH, Matthews BW. Slow- and fast-binding inhibitors of thermolysin display different modes of binding: Crystallographic analysis of extended phosphonamidate transition-state analogues Biochemistry. 26: 8542-8553. PMID 3442675 DOI: 10.1021/Bi00400A008  1
1987 Alber T, Matthews BW. [27] Structure and thermal stability of phage T4 lysozyme Methods in Enzymology. 154: 511-533. PMID 3323816 DOI: 10.1016/0076-6879(87)54093-9  1
1987 Alber T, Sun DP, Wilson K, Wozniak JA, Cook SP, Matthews BW. Contributions of hydrogen bonds of Thr 157 to the thermodynamic stability of phage T4 lysozyme. Nature. 330: 41-6. PMID 3118211 DOI: 10.1038/330041A0  1
1986 Matthews BW, Rossmann MG. Comparison of protein structures. Methods in Enzymology. 115: 397-420. PMID 4079794 DOI: 10.1016/0076-6879(85)15029-9  0.44
1986 Brennan RG, Takeda Y, Kim J, Anderson WF, Matthews BW. Crystallization of a complex of cro repressor with a 17 base-pair operator Journal of Molecular Biology. 188: 115-118. PMID 2940371 DOI: 10.1016/0022-2836(86)90488-2  1
1986 Brennan RG, Kim J, Takeda Y, Anderson WF, Matthews BW. Studies on the crystallization of the cro protein-pseudo OR3 complex Journal of Crystal Growth. 76: 715-718. DOI: 10.1016/0022-0248(86)90189-2  1
1985 Matthews BW. Determination of protein molecular weight, hydration, and packing from crystal density Methods in Enzymology. 176-187. PMID 4079764 DOI: 10.1016/0076-6879(85)14018-8  1
1985 Swanson R, Weaver LH, Remington SJ, Matthews BW, Baldwin TO. Crystals of luciferase from Vibrio harveyi. A preliminary characterization. The Journal of Biological Chemistry. 260: 1287-9. PMID 3968061  1
1984 Hangauer DG, Monzingo AF, Matthews BW. An interactive computer graphics study of thermolysin-catalyzed peptide cleavage and inhibition by N-carboxymethyl dipeptides Biochemistry. 23: 5730-5741. PMID 6525336 DOI: 10.1021/bi00319a011  1
1984 Weaver LH, Grütter MG, Remington SJ, Gray TM, Isaacs NW, Matthews BW. Comparison of goose-type, chicken-type, and phage-type lysozymes illustrates the changes that occur in both amino acid sequence and three-dimensional structure during evolution. Journal of Molecular Evolution. 21: 97-111. PMID 6442995 DOI: 10.1007/Bf02100084  1
1983 Ohlendorf DH, Anderson WF, Lewis M, Pabo CO, Matthews BW. Comparison of the structures of cro and lambda repressor proteins from bacteriophage lambda. Journal of Molecular Biology. 169: 757-69. PMID 6226802 DOI: 10.1016/S0022-2836(83)80169-7  1
1982 Steitz TA, Ohlendorf DH, McKay DB, Anderson WF, Matthews BW. Structural similarity in the DNA-binding domains of catabolite gene activator and cro repressor proteins. Proceedings of the National Academy of Sciences of the United States of America. 79: 3097-100. PMID 6212926 DOI: 10.1073/Pnas.79.10.3097  1
1981 Matthews BW, Remington SJ, Grütter MG, Anderson WF. Relation between hen egg white lysozyme and bacteriophage T4 lysozyme: evolutionary implications. Journal of Molecular Biology. 147: 545-58. PMID 7277500 DOI: 10.1016/0022-2836(81)90399-5  1
1981 Anderson WF, Grütter MG, Remington SJ, Weaver LH, Matthews BW. Crystallographic determination of the mode of binding of oligosaccharides to T4 bacteriophage lysozyme: implications for the mechanism of catalysis. Journal of Molecular Biology. 147: 523-43. PMID 7277499 DOI: 10.1016/0022-2836(81)90398-3  1
1981 Matthews BW, Grütter MG, Anderson WF, Remington SJ. Common precursor of lysozymes of hen egg-white and bacteriophage T4. Nature. 290: 334-5. PMID 7207627 DOI: 10.1038/290334A0  1
1980 Remington SJ, Matthews BW. A systematic approach to the comparison of protein structures. Journal of Molecular Biology. 140: 77-99. PMID 6774102 DOI: 10.1016/0022-2836(80)90357-5  1
1979 Matthews BW, Fenna RE, Bolognesi MC, Schmid MF, Olson JM. Structure of a bacteriochlorophyll a-protein from the green photosynthetic bacterium Prosthecochloris aestuarii. Journal of Molecular Biology. 131: 259-85. PMID 490647 DOI: 10.1016/0022-2836(79)90076-7  1
1978 Remington SJ, Anderson WF, Owen J, Ten Eyck LF, Grainger CT, Matthews BW. Structure of the lysozyme from bacteriophage T4: an electron density map at 2.4 A resolution. Journal of Molecular Biology. 118: 81-98. PMID 625058 DOI: 10.1016/0022-2836(78)90245-0  1
1978 Remington SJ, Matthews BW. A general method to assess similarity of protein structures, with applications to T4 bacteriophage lysozyme. Proceedings of the National Academy of Sciences of the United States of America. 75: 2180-4. PMID 276859 DOI: 10.1073/Pnas.75.5.2180  1
1977 Holmes MA, Remington SJ, Schwendimann B, Christie GE, Matthews BW. Crystallographic data for sturgeon holo-D-glyceraldehyde-3-phosphate dehydrogenase: a holo-D-glyceraldehyde-3-phosphate dehydrogenase with crystallographic 2-fold symmetry. Journal of Molecular Biology. 112: 651-2. PMID 875036 DOI: 10.1016/S0022-2836(77)80169-1  1
1977 Fenna RE, Eyck LF, Matthews BW. Atomic coordinates for the chlorophyll core of a bacteriochlorophyll a-protein from green photosynthetic bacterial. Biochemical and Biophysical Research Communications. 75: 751-6. PMID 856182 DOI: 10.1016/0006-291X(77)91536-4  1
1977 Matthews BW, Fenna RE, Remington SJ. An evaluation of electron micrographs of bacteriochlorophyll a-protein crystals in terms of the structure determined by x-ray crystallography. Journal of Ultrastructure Research. 58: 316-30. PMID 850296 DOI: 10.1016/S0022-5320(77)90022-3  1
1977 Remington SJ, Eyck LF, Matthews BW. Atomic coordinates for T4 phage lysozyme. Biochemical and Biophysical Research Communications. 75: 265-70. PMID 322662 DOI: 10.1016/0006-291X(77)91038-5  1
1975 Fenna RE, Matthews BW. Chlorophyll arrangement in a bacteriochlorophyll protein from chlorobium limicola Nature. 258: 573-577. DOI: 10.1038/258573A0  1
1974 Fenna RE, Matthews BW, Olson JM, Shaw EK. Structure of a bacteriochlorophyll-protein from the green photosynthetic bacterium Chlorobium limicola: crystallographic evidence for a trimer. Journal of Molecular Biology. 84: 231-40. PMID 4830866 DOI: 10.1016/0022-2836(74)90581-6  1
1974 Matthews BW, Remington SJ. The three dimensional structure of the lysozyme from bacteriophage T4. Proceedings of the National Academy of Sciences of the United States of America. 71: 4178-82. PMID 4530293 DOI: 10.1073/Pnas.71.10.4178  1
1973 Matthews BW, Dahlquist FW, Maynard AY. Crystallographic data for lysozyme from bacteriophage T4 Journal of Molecular Biology. 78: 575-576. PMID 4754847 DOI: 10.1016/0022-2836(73)90478-6  1
1973 Blow DM, Matthews BW. Parameter refinement in the multiple isomorphous‐replacement method Acta Crystallographica Section A. 29: 56-62. DOI: 10.1107/S0567739473000124  1
1972 Matthews BW, Colman PM, Jansonius JN, Titani K, Walsh KA, Neurath H. Structure of thermolysin. Nature: New Biology. 238: 41-3. PMID 18663850 DOI: 10.1038/Newbio238041A0  1
1972 Matthews BW, Jansonius JN, Colman PM, Schoenborn BP, Dupourque D. Three-dimensional structure of thermolysin. Nature: New Biology. 238: 37-41. PMID 18663849 DOI: 10.1038/Newbio238037A0  1
1972 Colman PM, Jansonius JN, Matthews BW. The structure of thermolysin: an electron density map at 2-3 A resolution. Journal of Molecular Biology. 70: 701-24. PMID 5083153 DOI: 10.1016/0022-2836(72)90569-4  1
1972 Matthews BW, Klopfenstein CE, Colman PM. A computer controlled film scanner for x-ray crystallography Journal of Physics E: Scientific Instruments. 5: 353-359. DOI: 10.1088/0022-3735/5/4/018  1
1970 Cohen GH, Matthews BW, Davies DR. The relation between gamma-and alpha-chymotrypsin. II. Direct comparison of the electron densities at 5-5 Angstrom resolution. Acta Crystallographica. Section B: Structural Crystallography and Crystal Chemistry. 26: 1062-9. PMID 5537151  0.76
1969 Cohen GH, Silverton EW, Matthews BW, Braxton H, Davies DR. Structure of gamma-chymotrypsin at 5.5 A resolution. Journal of Molecular Biology. 44: 129-41. PMID 5822897 DOI: 10.1016/0022-2836(69)90409-4  1
1969 Birktoft JJ, Matthews BW, Blow DM. Atomic co-ordinates for tosyl-alpha-chymotrypsin. Biochemical and Biophysical Research Communications. 36: 131-7. PMID 5796747 DOI: 10.1016/0006-291X(69)90659-7  1
1968 Sigler PB, Blow DM, Matthews BW, Henderson R. Structure of crystalline -chymotrypsin. II. A preliminary report including a hypothesis for the activation mechanism. Journal of Molecular Biology. 35: 143-64. PMID 5760561 DOI: 10.1016/S0022-2836(68)80043-9  1
1968 Matthews BW, Cohen GH, Silverton EW, Braxton H, Davies DR. Relation between gamma- and alpha-chymotrypsin. Journal of Molecular Biology. 36: 179-83. PMID 5760536 DOI: 10.1016/0022-2836(68)90228-3  1
1968 Matthews BW. Some crystal forms of bovine chymotrypsinogen B and chymotrypsinogen A Journal of Molecular Biology. 33: 499-501. PMID 5700708 DOI: 10.1016/0022-2836(68)90206-4  1
1968 Matthews BW. Solvent content of protein crystals Journal of Molecular Biology. 33: 491-497. PMID 5700707 DOI: 10.1016/0022-2836(68)90205-2  1
1968 Terry WD, Matthews BW, Davies DR. Crystallographic studies of a human immunoglobulin. Nature. 220: 239-41. PMID 4176457 DOI: 10.1038/220239A0  0.76
1967 Matthews BW, Sigler PB, Henderson R, Blow DM. Three-dimensional structure of tosyl-alpha-chymotrypsin. Nature. 214: 652-6. PMID 6049071 DOI: 10.1038/214652A0  1
1966 Sigler PB, Jeffery BA, Matthews BW, Blow DM. An x-ray diffraction study of inhibited derivatives of alpha-chymotrypsin. Journal of Molecular Biology. 15: 175-92. PMID 5912039 DOI: 10.1016/S0022-2836(66)80219-X  1
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