Brian M. Baker - Publications

Affiliations: 
Chemistry and Biochemistry University of Notre Dame, Notre Dame, IN, United States 
Area:
molecular recognition and cellular communication
Website:
http:/bmblab.org

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Year Citation  Score
2024 Adams AC, Macy AM, Borden ES, Herrmann LM, Brambley CA, Ma T, Li X, Hughes A, Roe DJ, Mangold AR, Buetow KH, Wilson MA, Baker BM, Hastings KT. Distinct sets of molecular characteristics define tumor-rejecting neoantigens. Biorxiv : the Preprint Server For Biology. PMID 38405868 DOI: 10.1101/2024.02.13.579546  0.335
2023 Mikhaylov V, Brambley CA, Keller GLJ, Arbuiso AG, Weiss LI, Baker BM, Levine AJ. Accurate modeling of peptide-MHC structures with AlphaFold. Structure (London, England : 1993). PMID 38113889 DOI: 10.1016/j.str.2023.11.011  0.528
2023 Gillig MA, Brennick CA, George MM, Balsbaugh JL, Shcheglova TV, Mandoiu II, Rosales T, Baker BM, Srivastava PK, Karandikar SH. CD8+ T Cell-Dependent Antitumor Activity In Vivo of a Mass Spectrometry-Identified Neoepitope despite Undetectable CD8+ Immunogenicity In Vitro. Journal of Immunology (Baltimore, Md. : 1950). PMID 37966257 DOI: 10.4049/jimmunol.2300356  0.325
2023 Klebanoff CA, Chandran SS, Baker BM, Quezada SA, Ribas A. T cell receptor therapeutics: immunological targeting of the intracellular cancer proteome. Nature Reviews. Drug Discovery. PMID 37891435 DOI: 10.1038/s41573-023-00809-z  0.445
2023 Shi T, Burg AR, Caldwell JT, Roskin KM, Castro-Rojas CM, Chukwuma PC, Gray GI, Foote SG, Alonso JA, Cuda CM, Allman DA, Rush JS, Regnier CH, Wieczorek G, Alloway RR, ... ... Baker BM, et al. Single cell transcriptomic analysis of renal allograft rejection reveals insights into intragraft TCR clonality. The Journal of Clinical Investigation. PMID 37227784 DOI: 10.1172/JCI170191  0.727
2023 Shi T, Burg AR, Caldwell JT, Roskin K, Castro-Rojas CM, Chukwuma PC, Gray GI, Foote SG, Alonso J, Cuda CM, Allman DA, Rush JS, Regnier CH, Wieczorek G, Alloway RR, ... ... Baker BM, et al. Single cell transcriptomic analysis of renal allograft rejection reveals novel insights into intragraft TCR clonality. Biorxiv : the Preprint Server For Biology. PMID 36798151 DOI: 10.1101/2023.02.08.524808  0.708
2022 Singh NK, Alonso JA, Devlin JR, Keller GLJ, Gray GI, Chiranjivi AK, Foote SG, Landau LM, Arbuiso AG, Weiss LI, Rosenberg AM, Hellman LM, Nishimura MI, Baker BM. A class-mismatched TCR bypasses MHC restriction via an unorthodox but fully functional binding geometry. Nature Communications. 13: 7189. PMID 36424374 DOI: 10.1038/s41467-022-34896-0  0.851
2022 Liu C, Liu H, Dasgupta M, Hellman LM, Zhang X, Qu K, Xue H, Wang Y, Fan F, Chang Q, Yu D, Ge L, Zhang Y, Cui Z, Zhang P, ... ... Baker BM, et al. Validation and promise of a TCR mimic antibody for cancer immunotherapy of hepatocellular carcinoma. Scientific Reports. 12: 12068. PMID 35840635 DOI: 10.1038/s41598-022-15946-5  0.67
2022 Ayres CM, Baker BM. Peptide-dependent tuning of major histocompatibility complex motional properties and the consequences for cellular immunity. Current Opinion in Immunology. 76: 102184. PMID 35550277 DOI: 10.1016/j.coi.2022.102184  0.558
2022 Keller GLJ, Weiss LI, Baker BM. Physicochemical Heuristics for Identifying High Fidelity, Near-Native Structural Models of Peptide/MHC Complexes. Frontiers in Immunology. 13: 887759. PMID 35547730 DOI: 10.3389/fimmu.2022.887759  0.528
2022 Chandran SS, Ma J, Klatt MG, Dündar F, Bandlamudi C, Razavi P, Wen HY, Weigelt B, Zumbo P, Fu SN, Banks LB, Yi F, Vercher E, Etxeberria I, Bestman WD, ... ... Baker BM, et al. Immunogenicity and therapeutic targeting of a public neoantigen derived from mutated PIK3CA. Nature Medicine. PMID 35484264 DOI: 10.1038/s41591-022-01786-3  0.407
2022 Rosenberg AM, Baker BM. Engineering the T cell receptor for fun and profit: Uncovering complex biology, interrogating the immune system, and targeting disease. Current Opinion in Structural Biology. 74: 102358. PMID 35344834 DOI: 10.1016/j.sbi.2022.102358  0.512
2022 Richards KA, Lavery C, Keller GLJ, Miller J, Baker BM, Sant AJ. A previously unappreciated polymorphism in the beta chain of I-A expressed in autoimmunity-prone SJL mice: Combined impact on antibody, CD4 T cell recognition and MHC class II dimer structural stability. Molecular Immunology. 143: 17-26. PMID 34995990 DOI: 10.1016/j.molimm.2021.12.022  0.436
2021 Pederson S, Biondi DM, Allan B, Cady R, Schaeffler B, Baker B, Latham J. Clinical Immunogenicity Evaluation of Eptinezumab, a Therapeutic Humanized Monoclonal Antibody Targeting Calcitonin Gene-Related Peptide (CGRP) for the Preventive Treatment of Migraine. Frontiers in Immunology. 12: 765822. PMID 34759933 DOI: 10.3389/fimmu.2021.765822  0.305
2021 Ebrahimi-Nik H, Moussa M, Englander RP, Singhaviranon S, Michaux J, Pak H, Miyadera H, Corwin WL, Keller GLJ, Hagymasi AT, Shcheglova TV, Coukos G, Baker BM, Mandoiu II, Bassani-Sternberg M, et al. Reversion analysis reveals the in vivo immunogenicity of a poorly MHC I-binding cancer neoepitope. Nature Communications. 12: 6423. PMID 34741035 DOI: 10.1038/s41467-021-26646-5  0.478
2021 Kaseke C, Park RJ, Singh NK, Koundakjian D, Bashirova A, Garcia Beltran WF, Takou Mbah OC, Ma J, Senjobe F, Urbach JM, Nathan A, Rossin EJ, Tano-Menka R, Khatri A, Piechocka-Trocha A, ... ... Baker BM, et al. HLA class-I-peptide stability mediates CD8 T cell immunodominance hierarchies and facilitates HLA-associated immune control of HIV. Cell Reports. 36: 109378. PMID 34260940 DOI: 10.1016/j.celrep.2021.109378  0.83
2021 Kaseke C, Park RJ, Singh NK, Koundakjian D, Bashirova A, Garcia Beltran WF, Takou Mbah OC, Ma J, Senjobe F, Urbach JM, Nathan A, Rossin EJ, Tano-Menka R, Khatri A, Piechocka-Trocha A, ... ... Baker BM, et al. HLA class-I-peptide stability mediates CD8 T cell immunodominance hierarchies and facilitates HLA-associated immune control of HIV. Cell Reports. 36: 109378. PMID 34260940 DOI: 10.1016/j.celrep.2021.109378  0.83
2021 Alonso JA, Smith AR, Baker BM. Tumor rejection properties of gp100-specific T cells correlate with T cell receptor binding affinity towards the wild type rather than anchor-modified antigen. Molecular Immunology. 135: 365-372. PMID 33990005 DOI: 10.1016/j.molimm.2021.05.001  0.839
2021 Ma J, Ayres CM, Hellman LM, Devlin JR, Baker BM. Dynamic allostery controls the peptide sensitivity of the Ly49C natural killer receptor. The Journal of Biological Chemistry. 100686. PMID 33891944 DOI: 10.1016/j.jbc.2021.100686  0.724
2021 Schmidt J, Smith AR, Magnin M, Racle J, Devlin JR, Bobisse S, Cesbron J, Bonnet V, Carmona SJ, Huber F, Ciriello G, Speiser DE, Bassani-Sternberg M, Coukos G, Baker BM, et al. Prediction of neo-epitope immunogenicity reveals TCR recognition determinants and provides insight into immunoediting. Cell Reports. Medicine. 2: 100194. PMID 33665637 DOI: 10.1016/j.xcrm.2021.100194  0.456
2021 Smith AR, Alonso JA, Ayres CM, Singh NK, Hellman LM, Baker BM. Structurally silent peptide anchor modifications allosterically modulate T cell recognition in a receptor-dependent manner. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33468649 DOI: 10.1073/pnas.2018125118  0.887
2020 Borrman T, Pierce BG, Vreven T, Baker BM, Weng Z. High-throughput modeling and scoring of TCR-pMHC complexes to predict cross-reactive peptides. Bioinformatics (Oxford, England). PMID 33355667 DOI: 10.1093/bioinformatics/btaa1050  0.527
2020 Singh NK, Alonso JA, Harris DT, Anderson SD, Ma J, Hellman LM, Rosenberg AM, Kolawole EM, Evavold BD, Kranz DM, Baker BM. An Engineered T Cell Receptor Variant Realizes the Limits of Functional Binding Modes. Biochemistry. PMID 33074657 DOI: 10.1021/acs.biochem.0c00689  0.888
2020 Devlin JR, Alonso JA, Ayres CM, Keller GLJ, Bobisse S, Vander Kooi CW, Coukos G, Gfeller D, Harari A, Baker BM. Structural dissimilarity from self drives neoepitope escape from immune tolerance. Nature Chemical Biology. PMID 32807968 DOI: 10.1038/S41589-020-0610-1  0.813
2020 Tarbe M, Miles JJ, Edwards ESJ, Sewell AK, Baker BM, Quideau S. Synthesis and biological evaluation of hapten-clicked analogues of the antigenic peptide Melan-A/MART-126(27L)-35. Chemmedchem. PMID 32162475 DOI: 10.1002/Cmdc.202000038  0.623
2020 Baker B, Kranz D. Decision letter: Interrogating the recognition landscape of a conserved HIV-specific TCR reveals distinct bacterial peptide cross-reactivity Elife. DOI: 10.7554/Elife.58128.Sa1  0.433
2020 Groth E, Ayres CM, Baker BM, Corcelli SA. Modeling the Binding Mechanism of a T Cell Receptor and Major Histocompatibility Complex Biophysical Journal. 118: 245a. DOI: 10.1016/J.Bpj.2019.11.1435  0.504
2019 Spear TT, Evavold BD, Baker BM, Nishimura MI. Understanding TCR affinity, antigen specificity, and cross-reactivity to improve TCR gene-modified T cells for cancer immunotherapy. Cancer Immunology, Immunotherapy : Cii. PMID 31595324 DOI: 10.1007/S00262-019-02401-0  0.506
2019 Singh NK, Abualrous ET, Ayres CM, Noé F, Gowthaman R, Pierce BG, Baker BM. Geometrical characterization of T cell receptor binding modes reveals class-specific binding to maximize access to antigen. Proteins. PMID 31589793 DOI: 10.1002/Prot.25829  0.819
2019 Riley TP, Keller GLJ, Smith AR, Davancaze LM, Arbuiso AG, Devlin JR, Baker BM. Structure Based Prediction of Neoantigen Immunogenicity. Frontiers in Immunology. 10: 2047. PMID 31555277 DOI: 10.3389/Fimmu.2019.02047  0.82
2019 McGrath E, Waschbüsch D, Baker BM, Khan AR. LRRK2 binds to the Rab32 subfamily in a GTP-dependent manner its armadillo domain. Small Gtpases. 1-14. PMID 31552791 DOI: 10.1080/21541248.2019.1666623  0.303
2019 Ebrahimi-Nik H, Michaux J, Corwin WL, Keller GL, Shcheglova T, Pak H, Coukos G, Baker BM, Mandoiu II, Bassani-Sternberg M, Srivastava PK. Mass spectrometry driven exploration reveals nuances of neoepitope-driven tumor rejection. Jci Insight. 5. PMID 31219806 DOI: 10.1172/Jci.Insight.129152  0.382
2019 Ayres CM, Abualrous ET, Bailey A, Abraham C, Hellman LM, Corcelli SA, Noé F, Elliott T, Baker BM. Dynamically Driven Allostery in MHC Proteins: Peptide-Dependent Tuning of Class I MHC Global Flexibility. Frontiers in Immunology. 10: 966. PMID 31130956 DOI: 10.3389/Fimmu.2019.00966  0.77
2019 Chandran S, Ma J, Klatt MG, Dündar F, Zumbo P, Femia MR, Betel D, Scheinberg DA, Baker BM, Klebanoff CA. Abstract CN01-03: T cell receptor gene therapy for a public neoantigen derived from mutated PIK3CA, a dominant driver oncogene in breast and endometrial cancers Molecular Cancer Therapeutics. 18. DOI: 10.1158/1535-7163.Targ-19-Cn01-03  0.479
2019 Devlin J, Bobisse S, Harari A, Baker B. 3348 Structural Determinants of Neoantigen Immunogenicity for Cancer Therapy Journal of Clinical and Translational Science. 3: 22-22. DOI: 10.1017/cts.2019.54  0.365
2018 Hellman LM, Foley KC, Singh NK, Alonso JA, Riley TP, Devlin JR, Ayres CM, Keller GLJ, Zhang Y, Vander Kooi CW, Nishimura MI, Baker BM. Improving T Cell Receptor On-Target Specificity via Structure-Guided Design. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 30617019 DOI: 10.1016/J.Ymthe.2018.12.010  0.85
2018 Riley TP, Baker BM. The intersection of affinity and specificity in the development and optimization of T cell receptor based therapeutics. Seminars in Cell & Developmental Biology. 84: 30-41. PMID 30449534 DOI: 10.1016/J.Semcdb.2017.10.017  0.78
2018 Riley TP, Hellman LM, Gee MH, Mendoza JL, Alonso JA, Foley KC, Nishimura MI, Vander Kooi CW, Garcia KC, Baker BM. T cell receptor cross-reactivity expanded by dramatic peptide-MHC adaptability. Nature Chemical Biology. 14: 934-942. PMID 30224695 DOI: 10.1038/S41589-018-0130-4  0.872
2018 Eby JM, Smith AR, Riley TP, Cosgrove C, Ankney CM, Henning SW, Paulos CM, Garrett-Mayer E, Luiten RM, Nishimura MI, Baker BM, Le Poole IC. Molecular properties of gp100-reactive T cell receptors drive the cytokine profile and antitumor efficacy of transgenic host T cells. Pigment Cell & Melanoma Research. PMID 30009548 DOI: 10.1111/Pcmr.12724  0.8
2018 Spear TT, Wang Y, Smith TW, Simms PE, Garrett-Mayer E, Hellman LM, Baker BM, Nishimura MI. Altered Peptide Ligands Impact the Diversity of Polyfunctional Phenotypes in T Cell Receptor Gene-Modified T Cells. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 29503203 DOI: 10.1016/J.Ymthe.2018.01.015  0.742
2018 Baker BM. Accounting for Specificity and Cross-Reactivity in T Cell Receptor Molecular Recognition Biophysical Journal. 114: 219a. DOI: 10.1016/J.Bpj.2017.11.1220  0.469
2017 Moore T, Wagner CR, Scurti GM, Hutchens KA, Godellas C, Clark AL, Kolawole EM, Hellman LM, Singh NK, Huyke FA, Wang SY, Calabrese KM, Embree HD, Orentas R, Shirai K, ... ... Baker BM, et al. Correction to: Clinical and immunologic evaluation of three metastatic melanoma patients treated with autologous melanoma-reactive TCR-transduced T cells. Cancer Immunology, Immunotherapy : Cii. PMID 29264697 DOI: 10.1007/S00262-017-2102-Z  0.734
2017 Moore T, Wagner CR, Scurti GM, Hutchens KA, Godellas C, Clark AL, Kolawole EM, Hellman LM, Singh NK, Huyke FA, Wang SY, Calabrese KM, Embree HD, Orentas R, Shirai K, ... ... Baker BM, et al. Clinical and immunologic evaluation of three metastatic melanoma patients treated with autologous melanoma-reactive TCR-transduced T cells. Cancer Immunology, Immunotherapy : Cii. PMID 29052782 DOI: 10.1007/S00262-017-2073-0  0.744
2017 Singh NK, Riley TP, Baker SCB, Borrman T, Weng Z, Baker BM. Emerging Concepts in TCR Specificity: Rationalizing and (Maybe) Predicting Outcomes. Journal of Immunology (Baltimore, Md. : 1950). 199: 2203-2213. PMID 28923982 DOI: 10.4049/Jimmunol.1700744  0.85
2017 Ayres CM, Corcelli SA, Baker BM. Peptide and Peptide-Dependent Motions in MHC Proteins: Immunological Implications and Biophysical Underpinnings. Frontiers in Immunology. 8: 935. PMID 28824655 DOI: 10.3389/Fimmu.2017.00935  0.582
2017 Ayres CM, Riley TP, Corcelli SA, Baker BM. Modeling Sequence Dependent Peptide Fluctuations in Immunologic Recognition. Journal of Chemical Information and Modeling. PMID 28696685 DOI: 10.1021/Acs.Jcim.7B00118  0.801
2017 Spear TT, Wang Y, Foley KC, Murray DC, Scurti GM, Simms PE, Garrett-Mayer E, Hellman LM, Baker BM, Nishimura MI. Critical biological parameters modulate affinity as a determinant of function in T-cell receptor gene-modified T-cells. Cancer Immunology, Immunotherapy : Cii. PMID 28634816 DOI: 10.1007/S00262-017-2032-9  0.73
2017 Wang Y, Singh NK, Spear TT, Hellman LM, Piepenbrink KH, McMahan RH, Rosen HR, Vander Kooi CW, Nishimura MI, Baker BM. How an alloreactive T-cell receptor achieves peptide and MHC specificity. Proceedings of the National Academy of Sciences of the United States of America. PMID 28572406 DOI: 10.1073/Pnas.1700459114  0.849
2017 Blevins SJ, Baker BM. Using Global Analysis to Extend the Accuracy and Precision of Binding Measurements with T cell Receptors and Their Peptide/MHC Ligands. Frontiers in Molecular Biosciences. 4: 2. PMID 28197404 DOI: 10.3389/Fmolb.2017.00002  0.878
2017 Borrman T, Cimons J, Cosiano M, Purcaro M, Pierce BG, Baker BM, Weng Z. ATLAS: A database linking binding affinities with structures for wild-type and mutant TCR-pMHC complexes. Proteins. PMID 28160322 DOI: 10.1002/Prot.25260  0.557
2017 Riley TP, Mendoza J, Garcia KC, Baker BM. 2064 Journal of Clinical and Translational Science. 1: 54-55. DOI: 10.1017/cts.2017.195  0.819
2016 Baker BM, Evavold BD. MHC Bias by T Cell Receptors: Genetic Evidence for MHC and TCR Coevolution. Trends in Immunology. PMID 27939452 DOI: 10.1016/J.It.2016.11.003  0.52
2016 Singh NK, Baker BM. Ligand-Driven T Cell Receptor Selection in Celiac Disease. Structure (London, England : 1993). 24: 1623-1624. PMID 27705812 DOI: 10.1016/J.Str.2016.09.004  0.713
2016 Harris DT, Wang N, Riley TP, Anderson SD, Singh NK, Procko E, Baker BM, Kranz DM. Deep mutational scans as a guide to engineering high-affinity T cell receptor interactions with peptide-bound MHC. The Journal of Biological Chemistry. PMID 27681597 DOI: 10.1074/Jbc.M116.748681  0.832
2016 Riley TP, Ayres CM, Hellman LM, Singh NK, Cosiano M, Cimons JM, Anderson MJ, Piepenbrink KH, Pierce BG, Weng Z, Baker BM. A generalized framework for computational design and mutational scanning of T-cell receptor binding interfaces. Protein Engineering, Design & Selection : Peds. PMID 27624308 DOI: 10.1093/Protein/Gzw050  0.835
2016 Harris DT, Singh NK, Cai Q, Smith SN, Vander Kooi CW, Procko E, Kranz DM, Baker BM. An Engineered Switch in T Cell Receptor Specificity Leads to an Unusual but Functional Binding Geometry. Structure (London, England : 1993). PMID 27238970 DOI: 10.1016/J.Str.2016.04.011  0.768
2016 Ayres CM, Scott DR, Corcelli SA, Baker BM. Differential utilization of binding loop flexibility in T cell receptor ligand selection and cross-reactivity. Scientific Reports. 6: 25070. PMID 27118724 DOI: 10.1038/Srep25070  0.725
2016 Riley TP, Singh NK, Pierce BG, Weng Z, Baker BM. Computational Modeling of T Cell Receptor Complexes. Methods in Molecular Biology (Clifton, N.J.). 1414: 319-40. PMID 27094300 DOI: 10.1007/978-1-4939-3569-7_19  0.845
2016 Riley TP, Singh NK, Pierce BG, Baker BM, Weng Z. Computational Reprogramming of T Cell Antigen Receptor Binding Properties. Methods in Molecular Biology (Clifton, N.J.). 1414: 305-18. PMID 27094299 DOI: 10.1007/978-1-4939-3569-7_18  0.869
2016 Spear TT, Riley TP, Lyons GE, Callender GG, Roszkowski JJ, Wang Y, Simms PE, Scurti GM, Foley KC, Murray DC, Hellman LM, McMahan RH, Iwashima M, Garrett-Mayer E, Rosen HR, ... Baker BM, et al. Hepatitis C virus-cross-reactive TCR gene-modified T cells: a model for immunotherapy against diseases with genomic instability. Journal of Leukocyte Biology. PMID 26921345 DOI: 10.1189/Jlb.2A1215-561R  0.826
2016 Hellman LM, Yin L, Wang Y, Blevins SJ, Riley TP, Belden OS, Spear TT, Nishimura MI, Stern LJ, Baker BM. Differential scanning fluorimetry based assessments of the thermal and kinetic stability of peptide-MHC complexes. Journal of Immunological Methods. PMID 26906089 DOI: 10.1016/J.Jim.2016.02.016  0.832
2016 Blevins SJ, Pierce BG, Singh NK, Riley TP, Wang Y, Spear TT, Nishimura MI, Weng Z, Baker BM. How structural adaptability exists alongside HLA-A2 bias in the human αβ TCR repertoire. Proceedings of the National Academy of Sciences of the United States of America. PMID 26884163 DOI: 10.1073/Pnas.1522069113  0.84
2015 Thompson MG, Larson M, Vidrine A, Barrios K, Navarro F, Meyers K, Simms P, Prajapati K, Chitsike L, Hellman LM, Baker BM, Watkins SK. FOXO3-NF-κB RelA Protein Complexes Reduce Proinflammatory Cell Signaling and Function. Journal of Immunology (Baltimore, Md. : 1950). PMID 26561547 DOI: 10.4049/Jimmunol.1501758  0.591
2015 Adams JJ, Narayanan S, Birnbaum ME, Sidhu SS, Blevins SJ, Gee MH, Sibener LV, Baker BM, Kranz DM, Garcia KC. Structural interplay between germline interactions and adaptive recognition determines the bandwidth of TCR-peptide-MHC cross-reactivity. Nature Immunology. PMID 26523866 DOI: 10.1038/Ni.3310  0.874
2014 Smith SN, Wang Y, Baylon JL, Singh NK, Baker BM, Tajkhorshid E, Kranz DM. Changing the peptide specificity of a human T-cell receptor by directed evolution. Nature Communications. 5: 5223. PMID 25376839 DOI: 10.1038/Ncomms6223  0.813
2014 Duan F, Duitama J, Al Seesi S, Ayres CM, Corcelli SA, Pawashe AP, Blanchard T, McMahon D, Sidney J, Sette A, Baker BM, Mandoiu II, Srivastava PK. Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity. The Journal of Experimental Medicine. 211: 2231-48. PMID 25245761 DOI: 10.1084/jem.20141308  0.389
2014 Pierce BG, Hellman LM, Hossain M, Singh NK, Vander Kooi CW, Weng Z, Baker BM. Computational design of the affinity and specificity of a therapeutic T cell receptor. Plos Computational Biology. 10: e1003478. PMID 24550723 DOI: 10.1371/Journal.Pcbi.1003478  0.878
2014 Hawse WF, De S, Greenwood AI, Nicholson LK, Zajicek J, Kovrigin EL, Kranz DM, Garcia KC, Baker BM. TCR scanning of peptide/MHC through complementary matching of receptor and ligand molecular flexibility. Journal of Immunology (Baltimore, Md. : 1950). 192: 2885-91. PMID 24523505 DOI: 10.4049/Jimmunol.1302953  0.836
2014 Pierce BG, Hellman LM, Hossain M, Singh NK, Kooi CWV, Weng Z, Baker BM. Scores from ZAFFI (ZF) and Rosetta (Ros), predicted peptide contacts, and measured energies (in kcal/mol) for DMF5 point mutants binding to ELA/HLA-A2 and AAG/HLA-A2. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1003478.T002  0.831
2013 Smith SN, Sommermeyer D, Piepenbrink KH, Blevins SJ, Bernhard H, Uckert W, Baker BM, Kranz DM. Plasticity in the contribution of T cell receptor variable region residues to binding of peptide-HLA-A2 complexes. Journal of Molecular Biology. 425: 4496-507. PMID 23954306 DOI: 10.1016/J.Jmb.2013.08.007  0.863
2013 Hawse WF, Gloor BE, Ayres CM, Kho K, Nuter E, Baker BM. Peptide modulation of class I major histocompatibility complex protein molecular flexibility and the implications for immune recognition. The Journal of Biological Chemistry. 288: 24372-81. PMID 23836912 DOI: 10.1074/Jbc.M113.490664  0.871
2013 Cole DK, Sami M, Scott DR, Rizkallah PJ, Borbulevych OY, Todorov PT, Moysey RK, Jakobsen BK, Boulter JM, Baker BM, Yi Li. Increased Peptide Contacts Govern High Affinity Binding of a Modified TCR Whilst Maintaining a Native pMHC Docking Mode. Frontiers in Immunology. 4: 168. PMID 23805144 DOI: 10.3389/Fimmu.2013.00168  0.858
2013 Piepenbrink KH, Blevins SJ, Scott DR, Baker BM. The basis for limited specificity and MHC restriction in a T cell receptor interface. Nature Communications. 4: 1948. PMID 23736024 DOI: 10.1038/Ncomms2948  0.875
2013 Madura F, Rizkallah PJ, Miles KM, Holland CJ, Bulek AM, Fuller A, Schauenburg AJ, Miles JJ, Liddy N, Sami M, Li Y, Hossain M, Baker BM, Jakobsen BK, Sewell AK, et al. T-cell receptor specificity maintained by altered thermodynamics. The Journal of Biological Chemistry. 288: 18766-75. PMID 23698002 DOI: 10.1074/Jbc.M113.464560  0.81
2013 Baker BM, Piepenbrink KH, Blevins SJ. T Cell Receptor Specificity, Cross-Reactivity, and MHC Restriction are Inextricably Linked and Result from Cooperative Engagement of the Composite Peptide/MHC Surface Biophysical Journal. 104: 403a. DOI: 10.1016/J.Bpj.2012.11.2249  0.882
2012 Scott DR, Vardeman CF, Corcelli SA, Baker BM. Limitations of time-resolved fluorescence suggested by molecular simulations: assessing the dynamics of T cell receptor binding loops. Biophysical Journal. 103: 2532-40. PMID 23260055 DOI: 10.1016/J.Bpj.2012.10.037  0.646
2012 Baker BM, Scott DR, Blevins SJ, Hawse WF. Structural and dynamic control of T-cell receptor specificity, cross-reactivity, and binding mechanism. Immunological Reviews. 250: 10-31. PMID 23046120 DOI: 10.1111/J.1600-065X.2012.01165.X  0.877
2012 Ekeruche-Makinde J, Clement M, Cole DK, Edwards ES, Ladell K, Miles JJ, Matthews KK, Fuller A, Lloyd KA, Madura F, Dolton GM, Pentier J, Lissina A, Gostick E, Baxter TK, ... Baker BM, et al. T-cell receptor-optimized peptide skewing of the T-cell repertoire can enhance antigen targeting. The Journal of Biological Chemistry. 287: 37269-81. PMID 22952231 DOI: 10.1074/Jbc.M112.386409  0.609
2012 Hawse WF, Champion MM, Joyce MV, Hellman LM, Hossain M, Ryan V, Pierce BG, Weng Z, Baker BM. Cutting edge: Evidence for a dynamically driven T cell signaling mechanism. Journal of Immunology (Baltimore, Md. : 1950). 188: 5819-23. PMID 22611242 DOI: 10.4049/Jimmunol.1200952  0.848
2012 Kumarasiri M, Llarrull LI, Borbulevych O, Fishovitz J, Lastochkin E, Baker BM, Mobashery S. An amino acid position at crossroads of evolution of protein function: antibiotic sensor domain of BlaR1 protein from Staphylococcus aureus versus clasS D β-lactamases. The Journal of Biological Chemistry. 287: 8232-41. PMID 22262858 DOI: 10.1074/Jbc.M111.333179  0.637
2012 Aggen DH, Chervin AS, Schmitt TM, Engels B, Stone JD, Richman SA, Piepenbrink KH, Baker BM, Greenberg PD, Schreiber H, Kranz DM. Single-chain VαVβ T-cell receptors function without mispairing with endogenous TCR chains. Gene Therapy. 19: 365-74. PMID 21753797 DOI: 10.1038/Gt.2011.104  0.777
2011 Scott DR, Borbulevych OY, Piepenbrink KH, Corcelli SA, Baker BM. Disparate degrees of hypervariable loop flexibility control T-cell receptor cross-reactivity, specificity, and binding mechanism. Journal of Molecular Biology. 414: 385-400. PMID 22019736 DOI: 10.1016/J.Jmb.2011.10.006  0.869
2011 Insaidoo FK, Borbulevych OY, Hossain M, Santhanagopolan SM, Baxter TK, Baker BM. Loss of T cell antigen recognition arising from changes in peptide and major histocompatibility complex protein flexibility: implications for vaccine design. The Journal of Biological Chemistry. 286: 40163-73. PMID 21937447 DOI: 10.1074/jbc.M111.283564  0.871
2011 Borbulevych OY, Santhanagopolan SM, Hossain M, Baker BM. TCRs used in cancer gene therapy cross-react with MART-1/Melan-A tumor antigens via distinct mechanisms. Journal of Immunology (Baltimore, Md. : 1950). 187: 2453-63. PMID 21795600 DOI: 10.4049/Jimmunol.1101268  0.831
2011 Borbulevych O, Kumarasiri M, Wilson B, Llarrull LI, Lee M, Hesek D, Shi Q, Peng J, Baker BM, Mobashery S. Lysine Nzeta-decarboxylation switch and activation of the beta-lactam sensor domain of BlaR1 protein of methicillin-resistant Staphylococcus aureus. The Journal of Biological Chemistry. 286: 31466-72. PMID 21775440 DOI: 10.1074/Jbc.M111.252189  0.607
2011 Borbulevych OY, Piepenbrink KH, Baker BM. Conformational melding permits a conserved binding geometry in TCR recognition of foreign and self molecular mimics. Journal of Immunology (Baltimore, Md. : 1950). 186: 2950-8. PMID 21282516 DOI: 10.4049/Jimmunol.1003150  0.852
2011 Aggen DH, Chervin AS, Insaidoo FK, Piepenbrink KH, Baker BM, Kranz DM. Identification and engineering of human variable regions that allow expression of stable single-chain T cell receptors. Protein Engineering, Design & Selection : Peds. 24: 361-72. PMID 21159619 DOI: 10.1093/Protein/Gzq113  0.802
2011 Piepenbrink KH, Baker BM. The Binding Energetics of a T-Cell Receptor Show a Bias Toward the Conserved Antigen Presentation Molecule, HLA Biophysical Journal. 100: 527a. DOI: 10.1016/J.Bpj.2010.12.3082  0.855
2010 Tarbe M, Azcune I, Balentová E, Miles JJ, Edwards EE, Miles KM, Do P, Baker BM, Sewell AK, Aizpurua JM, Douat-Casassus C, Quideau S. Design, synthesis and evaluation of β-lactam antigenic peptide hybrids; unusual opening of the β-lactam ring in acidic media. Organic & Biomolecular Chemistry. 8: 5345-53. PMID 20927455 DOI: 10.1039/C003877F  0.577
2010 Douat-Casassus C, Borbulevych O, Tarbe M, Gervois N, Jotereau F, Baker BM, Quideau S. Crystal structures of HLA-A*0201 complexed with Melan-A/MART-1(26(27L)-35) peptidomimetics reveal conformational heterogeneity and highlight degeneracy of T cell recognition. Journal of Medicinal Chemistry. 53: 7061-6. PMID 20806940 DOI: 10.1021/Jm100683P  0.777
2010 Borbulevych OY, Do P, Baker BM. Structures of native and affinity-enhanced WT1 epitopes bound to HLA-A*0201: implications for WT1-based cancer therapeutics. Molecular Immunology. 47: 2519-24. PMID 20619457 DOI: 10.1016/J.Molimm.2010.06.005  0.797
2009 Piepenbrink KH, Gloor BE, Armstrong KM, Baker BM. Methods for quantifying T cell receptor binding affinities and thermodynamics. Methods in Enzymology. 466: 359-81. PMID 21609868 DOI: 10.1016/S0076-6879(09)66015-8  0.868
2009 Borbulevych OY, Piepenbrink KH, Gloor BE, Scott DR, Sommese RF, Cole DK, Sewell AK, Baker BM. T cell receptor cross-reactivity directed by antigen-dependent tuning of peptide-MHC molecular flexibility. Immunity. 31: 885-96. PMID 20064447 DOI: 10.1016/J.Immuni.2009.11.003  0.856
2009 Insaidoo FK, Zajicek J, Baker BM. A general and efficient approach for NMR studies of peptide dynamics in class I MHC peptide binding grooves. Biochemistry. 48: 9708-10. PMID 19772349 DOI: 10.1021/Bi9008787  0.871
2009 Piepenbrink KH, Borbulevych OY, Sommese RF, Clemens J, Armstrong KM, Desmond C, Do P, Baker BM. Fluorine substitutions in an antigenic peptide selectively modulate T-cell receptor binding in a minimally perturbing manner. The Biochemical Journal. 423: 353-61. PMID 19698083 DOI: 10.1042/Bj20090732  0.891
2009 Bowerman NA, Crofts TS, Chlewicki L, Do P, Baker BM, Christopher Garcia K, Kranz DM. Engineering the binding properties of the T cell receptor:peptide:MHC ternary complex that governs T cell activity. Molecular Immunology. 46: 3000-8. PMID 19595460 DOI: 10.1016/J.Molimm.2009.06.012  0.536
2009 Chen H, Piechocka-Trocha A, Miura T, Brockman MA, Julg BD, Baker BM, Rothchild AC, Block BL, Schneidewind A, Koibuchi T, Pereyra F, Allen TM, Walker BD. Differential neutralization of human immunodeficiency virus (HIV) replication in autologous CD4 T cells by HIV-specific cytotoxic T lymphocytes. Journal of Virology. 83: 3138-49. PMID 19158248 DOI: 10.1128/Jvi.02073-08  0.501
2008 Armstrong KM, Piepenbrink KH, Baker BM. Conformational changes and flexibility in T-cell receptor recognition of peptide-MHC complexes. The Biochemical Journal. 415: 183-96. PMID 18800968 DOI: 10.1042/Bj20080850  0.864
2008 Miura T, Brockman MA, Brumme CJ, Brumme ZL, Carlson JM, Pereyra F, Trocha A, Addo MM, Block BL, Rothchild AC, Baker BM, Flynn T, Schneidewind A, Li B, Wang YE, et al. Genetic characterization of human immunodeficiency virus type 1 in elite controllers: lack of gross genetic defects or common amino acid changes. Journal of Virology. 82: 8422-30. PMID 18562530 DOI: 10.1128/Jvi.00535-08  0.365
2008 Armstrong KM, Insaidoo FK, Baker BM. Thermodynamics of T-cell receptor-peptide/MHC interactions: progress and opportunities. Journal of Molecular Recognition : Jmr. 21: 275-87. PMID 18496839 DOI: 10.1002/Jmr.896  0.861
2008 Loaiza A, Armstrong KM, Baker BM, Abu-Omar MM. Kinetics of thermal unfolding of phenylalanine hydroxylase variants containing different metal cofactors (FeII, CoII, and ZnII) and their isokinetic relationship. Inorganic Chemistry. 47: 4877-83. PMID 18433092 DOI: 10.1021/Ic800181Q  0.645
2007 Borbulevych OY, Insaidoo FK, Baxter TK, Powell DJ, Johnson LA, Restifo NP, Baker BM. Structures of MART-126/27-35 Peptide/HLA-A2 complexes reveal a remarkable disconnect between antigen structural homology and T cell recognition. Journal of Molecular Biology. 372: 1123-36. PMID 17719062 DOI: 10.1016/J.Jmb.2007.07.025  0.883
2007 Armstrong KM, Baker BM. A comprehensive calorimetric investigation of an entropically driven T cell receptor-peptide/major histocompatibility complex interaction. Biophysical Journal. 93: 597-609. PMID 17449678 DOI: 10.1529/Biophysj.107.104570  0.799
2007 Davis-Harrison RL, Insaidoo FK, Baker BM. T cell receptor binding transition states and recognition of peptide/MHC. Biochemistry. 46: 1840-50. PMID 17249694 DOI: 10.1021/Bi061702P  0.854
2006 Gagnon SJ, Borbulevych OY, Davis-Harrison RL, Turner RV, Damirjian M, Wojnarowicz A, Biddison WE, Baker BM. T cell receptor recognition via cooperative conformational plasticity. Journal of Molecular Biology. 363: 228-43. PMID 16962135 DOI: 10.1016/J.Jmb.2006.08.045  0.879
2005 Gagnon SJ, Borbulevych OY, Davis-Harrison RL, Baxter TK, Clemens JR, Armstrong KM, Turner RV, Damirjian M, Biddison WE, Baker BM. Unraveling a hotspot for TCR recognition on HLA-A2: evidence against the existence of peptide-independent TCR binding determinants. Journal of Molecular Biology. 353: 556-73. PMID 16197958 DOI: 10.1016/J.Jmb.2005.08.024  0.874
2005 Borbulevych OY, Baxter TK, Yu Z, Restifo NP, Baker BM. Increased immunogenicity of an anchor-modified tumor-associated antigen is due to the enhanced stability of the peptide/MHC complex: implications for vaccine design. Journal of Immunology (Baltimore, Md. : 1950). 174: 4812-20. PMID 15814707 DOI: 10.4049/Jimmunol.174.8.4812  0.762
2005 Davis-Harrison RL, Armstrong KM, Baker BM. Two different T cell receptors use different thermodynamic strategies to recognize the same peptide/MHC ligand. Journal of Molecular Biology. 346: 533-50. PMID 15670602 DOI: 10.1016/J.Jmb.2004.11.063  0.861
2005 Davis-Harrison RL, Armstrong KM, Baker BM. Corrigendum to “Two Different T Cell Receptors use Different Thermodynamic Strategies to Recognize the Same Peptide/MHC Ligand” [J. Mol. Biol. (2005) 346, 533–550] Journal of Molecular Biology. 349: 906. DOI: 10.1016/J.Jmb.2005.04.038  0.861
2004 Yu Z, Theoret MR, Touloukian CE, Surman DR, Garman SC, Feigenbaum L, Baxter TK, Baker BM, Restifo NP. Poor immunogenicity of a self/tumor antigen derives from peptide-MHC-I instability and is independent of tolerance. The Journal of Clinical Investigation. 114: 551-9. PMID 15314692 DOI: 10.1172/Jci21695  0.77
2004 Swalley SE, Baker BM, Calder LJ, Harrison SC, Skehel JJ, Wiley DC. Full-length influenza hemagglutinin HA2 refolds into the trimeric low-pH-induced conformation. Biochemistry. 43: 5902-11. PMID 15134464 DOI: 10.1021/Bi049807K  0.539
2004 Baxter TK, Gagnon SJ, Davis-Harrison RL, Beck JC, Binz AK, Turner RV, Biddison WE, Baker BM. Strategic mutations in the class I major histocompatibility complex HLA-A2 independently affect both peptide binding and T cell receptor recognition. The Journal of Biological Chemistry. 279: 29175-84. PMID 15131131 DOI: 10.1074/Jbc.M403372200  0.865
2003 Binz AK, Rodriguez RC, Biddison WE, Baker BM. Thermodynamic and kinetic analysis of a peptide-class I MHC interaction highlights the noncovalent nature and conformational dynamics of the class I heterotrimer. Biochemistry. 42: 4954-61. PMID 12718537 DOI: 10.1021/Bi034077M  0.565
2002 Wang Z, Turner R, Baker BM, Biddison WE. MHC allele-specific molecular features determine peptide/HLA-A2 conformations that are recognized by HLA-A2-restricted T cell receptors. Journal of Immunology (Baltimore, Md. : 1950). 169: 3146-54. PMID 12218132 DOI: 10.4049/Jimmunol.169.6.3146  0.567
2001 Baker BM, Wiley DC. alpha beta T cell receptor ligand-specific oligomerization revisited. Immunity. 14: 681-92. PMID 11420039 DOI: 10.1016/S1074-7613(01)00160-1  0.6
2001 Baker BM, Turner RV, Gagnon SJ, Wiley DC, Biddison WE. Identification of a crucial energetic footprint on the alpha1 helix of human histocompatibility leukocyte antigen (HLA)-A2 that provides functional interactions for recognition by tax peptide/HLA-A2-specific T cell receptors. The Journal of Experimental Medicine. 193: 551-62. PMID 11238586 DOI: 10.1084/Jem.193.5.551  0.665
2000 Baker BM, Gagnon SJ, Biddison WE, Wiley DC. Conversion of a T cell antagonist into an agonist by repairing a defect in the TCR/peptide/MHC interface: implications for TCR signaling. Immunity. 13: 475-84. PMID 11070166 DOI: 10.1016/S1074-7613(00)00047-9  0.701
2000 Edgcomb SP, Baker BM, Murphy KP. The energetics of phosphate binding to a protein complex. Protein Science : a Publication of the Protein Society. 9: 927-33. PMID 10850802 DOI: 10.1110/Ps.9.5.927  0.812
2000 Khan AR, Baker BM, Ghosh P, Biddison WE, Wiley DC. The structure and stability of an HLA-A*0201/octameric tax peptide complex with an empty conserved peptide-N-terminal binding site. Journal of Immunology (Baltimore, Md. : 1950). 164: 6398-405. PMID 10843695 DOI: 10.4049/Jimmunol.164.12.6398  0.786
1999 Baker BM, Ding YH, Garboczi DN, Biddison WE, Wiley DC. Structural, biochemical, and biophysical studies of HLA-A2/altered peptide ligands binding to viral-peptide-specific human T-cell receptors. Cold Spring Harbor Symposia On Quantitative Biology. 64: 235-41. PMID 11232291 DOI: 10.1101/Sqb.1999.64.235  0.749
1999 Ding YH, Baker BM, Garboczi DN, Biddison WE, Wiley DC. Four A6-TCR/peptide/HLA-A2 structures that generate very different T cell signals are nearly identical. Immunity. 11: 45-56. PMID 10435578 DOI: 10.1016/S1074-7613(00)80080-1  0.72
1999 Murphy KP, Baker BM, Edgcomb SP, Horn JR. Structural energetics of serine protease inhibition Pure and Applied Chemistry. 71: 1207-1213. DOI: 10.1351/Pac199971071207  0.792
1998 Baker BM, Murphy KP. Prediction of binding energetics from structure using empirical parameterization. Methods in Enzymology. 295: 294-315. PMID 9750224 DOI: 10.1016/S0076-6879(98)95045-5  0.594
1997 Baker BM, Murphy KP. Dissecting the energetics of a protein-protein interaction: the binding of ovomucoid third domain to elastase. Journal of Molecular Biology. 268: 557-69. PMID 9159490 DOI: 10.1006/Jmbi.1997.0977  0.577
1996 Baker BM, Murphy KP. Evaluation of linked protonation effects in protein binding reactions using isothermal titration calorimetry. Biophysical Journal. 71: 2049-55. PMID 8889179 DOI: 10.1016/S0006-3495(96)79403-1  0.543
Low-probability matches (unlikely to be authored by this person)
2023 Custodio JM, Ayres CM, Rosales TJ, Brambley CA, Arbuiso AG, Landau LM, Keller GLJ, Srivastava PK, Baker BM. Structural and physical features that distinguish tumor-controlling from inactive cancer neoepitopes. Proceedings of the National Academy of Sciences of the United States of America. 120: e2312057120. PMID 38085776 DOI: 10.1073/pnas.2312057120  0.298
2019 Moldovan Loomis C, Dutzar B, Ojala EW, Hendrix L, Karasek C, Scalley-Kim M, Mulligan J, Fan P, Billgren J, Rubin V, Boshaw H, Kwon G, Marzolf S, Stewart E, Jurchen D, ... ... Baker B, et al. Pharmacologic Characterization of ALD1910, a Potent Humanized Monoclonal Antibody against the Pituitary Adenylate Cyclase Activating Peptide. The Journal of Pharmacology and Experimental Therapeutics. PMID 30643015 DOI: 10.1124/Jpet.118.253443  0.296
2020 Garcia-Martinez LF, Raport CJ, Ojala EW, Dutzar B, Anderson K, Stewart E, Kovacevich B, Baker B, Billgren J, Scalley-Kim M, Karasek C, Allison D, Latham JA. Pharmacologic Characterization of ALD403, a Potent Neutralizing Humanized Monoclonal Antibody Against the Calcitonin Gene-Related Peptide. The Journal of Pharmacology and Experimental Therapeutics. PMID 32366601 DOI: 10.1124/jpet.119.264671  0.275
2023 Ayres CM, Corcelli SA, Baker BM. The Energetic Landscape of Catch Bonds in TCR Interfaces. Journal of Immunology (Baltimore, Md. : 1950). 211: 325-332. PMID 37459192 DOI: 10.4049/jimmunol.2300121  0.266
2023 Khorki ME, Shi T, Cianciolo EE, Burg AR, Chukwuma PC, Picarsic JL, Morrice MK, Woodle ES, Maltzman JS, Ferguson A, Katz JD, Baker BM, Hildeman DA. Prior viral infection primes cross-reactive CD8+ T cells that respond to mouse heart allografts. Frontiers in Immunology. 14: 1287546. PMID 38143762 DOI: 10.3389/fimmu.2023.1287546  0.265
2024 Antunes DA, Baker BM, Cornberg M, Selin LK. Editorial: Quantification and prediction of T-cell cross-reactivity through experimental and computational methods. Frontiers in Immunology. 15: 1377259. PMID 38444853 DOI: 10.3389/fimmu.2024.1377259  0.231
2020 Brennick CA, George MM, Moussa MR, Hagymasi AT, Al Seesi S, Shcheglova TV, Englander RP, Keller GL, Balsbaugh JL, Baker BM, Schietinger A, Mandoiu II, Srivastava PK. An unbiased approach to defining bona fide cancer neoepitopes that elicit immune-mediated cancer rejection. The Journal of Clinical Investigation. PMID 33320837 DOI: 10.1172/JCI142823  0.23
2015 Belden OS, Baker SC, Baker BM. Citizens unite for computational immunology! Trends in Immunology. 36: 385-7. PMID 26139599 DOI: 10.1016/J.It.2015.05.004  0.225
2022 Rosales TJ, Baker BM. Chaperoning the dance of antigen presentation. Nature Chemical Biology. PMID 35725942 DOI: 10.1038/s41589-022-01069-5  0.211
2021 Shi T, Roskin K, Baker BM, Woodle ES, Hildeman D. Advanced Genomics-Based Approaches for Defining Allograft Rejection With Single Cell Resolution. Frontiers in Immunology. 12: 750754. PMID 34721421 DOI: 10.3389/fimmu.2021.750754  0.189
2004 Sem DS, Bertolaet B, Baker B, Chang E, Costache AD, Coutts S, Dong Q, Hansen M, Hong V, Huang X, Jack RM, Kho R, Lang H, Ma CT, Meininger D, et al. Systems-based design of bi-ligand inhibitors of oxidoreductases: filling the chemical proteomic toolbox. Chemistry & Biology. 11: 185-94. PMID 15123280 DOI: 10.1016/J.Chembiol.2004.02.012  0.182
2010 Julg B, Pereyra F, Buzón MJ, Piechocka-Trocha A, Clark MJ, Baker BM, Lian J, Miura T, Martinez-Picado J, Addo MM, Walker BD. Infrequent recovery of HIV from but robust exogenous infection of activated CD4(+) T cells in HIV elite controllers. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 51: 233-8. PMID 20550452 DOI: 10.1086/653677  0.168
1978 Reuben J, Baker BM, Kallenbach NR. Structure of mutagen nucleic acid complexes in solution. Proton chemical shifts in 9-aminoacridine complexes with dG-dC, dC-dG, and dA-dT-dG-dC-dA-dT. Biochemistry. 17: 2915-9. PMID 687569 DOI: 10.1021/Bi00607A033  0.158
2014 Rodriguez NM, Desai RA, Trappmann B, Baker BM, Chen CS. Micropatterned multicolor dynamically adhesive substrates to control cell adhesion and multicellular organization. Langmuir : the Acs Journal of Surfaces and Colloids. 30: 1327-35. PMID 24401172 DOI: 10.1021/La404037S  0.158
2019 Miller DR, Ingersoll MA, Chatterjee A, Baker B, Shrishrimal S, Kosmacek EA, Zhu Y, Cheng PW, Oberley-Deegan RE, Lin MF. p66Shc protein through a redox mechanism enhances the progression of prostate cancer cells towards castration-resistance. Free Radical Biology & Medicine. PMID 31100478 DOI: 10.1016/j.freeradbiomed.2019.05.015  0.157
2015 Baker BM, Trappmann B, Wang WY, Sakar MS, Kim IL, Shenoy VB, Burdick JA, Chen CS. Cell-mediated fibre recruitment drives extracellular matrix mechanosensing in engineered fibrillar microenvironments. Nature Materials. PMID 26461445 DOI: 10.1038/Nmat4444  0.157
2011 Nathan AS, Baker BM, Nerurkar NL, Mauck RL. Mechano-topographic modulation of stem cell nuclear shape on nanofibrous scaffolds. Acta Biomaterialia. 7: 57-66. PMID 20709198 DOI: 10.1016/J.Actbio.2010.08.007  0.147
2021 Baker B, Schaeffler B, Hirman J, Hompesch M, Pederson S, Smith J. Tolerability of eptinezumab in overweight, obese or type 1 diabetes patients. Endocrinology, Diabetes & Metabolism. 4: e00217. PMID 33855218 DOI: 10.1002/edm2.217  0.143
2007 Baker BM, Tortorella D. Dislocation of an endoplasmic reticulum membrane glycoprotein involves the formation of partially dislocated ubiquitinated polypeptides. The Journal of Biological Chemistry. 282: 26845-56. PMID 17650499 DOI: 10.1074/Jbc.M704315200  0.14
2013 Wozniak MA, Baker BM, Chen CS, Wilson KL. The emerin-binding transcription factor Lmo7 is regulated by association with p130Cas at focal adhesions. Peerj. 1: e134. PMID 24010014 DOI: 10.7717/Peerj.134  0.136
2016 Feldhaus AL, Anderson K, Dutzar B, Ojala E, McNeill PD, Fan P, Mulligan J, Marzolf S, Karasek C, Scalley-Kim M, Stewart E, Billgren J, Rubin V, Schneider K, Jurchen D, ... ... Baker B, et al. ALD1613, A Novel Long-Acting Monoclonal Antibody to Control ACTH-Driven Pharmacology. Endocrinology. en20161455. PMID 27906551 DOI: 10.1210/En.2016-1455  0.129
1978 Baker BM, Vanderkooi J, Kallenbach NR. Base stacking in a fluorescent dinucleoside monophosphate: εApεA Biopolymers. 17: 1361-1372. DOI: 10.1002/Bip.1978.360170519  0.127
2024 Rosenberg AM, Ayres CM, Medina-Cucurella AV, Whitehead TA, Baker BM. Enhanced T cell receptor specificity through framework engineering. Frontiers in Immunology. 15: 1345368. PMID 38545094 DOI: 10.3389/fimmu.2024.1345368  0.12
2011 Heo SJ, Nerurkar NL, Baker BM, Shin JW, Elliott DM, Mauck RL. Fiber stretch and reorientation modulates mesenchymal stem cell morphology and fibrous gene expression on oriented nanofibrous microenvironments. Annals of Biomedical Engineering. 39: 2780-90. PMID 21800203 DOI: 10.1007/S10439-011-0365-7  0.117
2009 Baker BM, Nerurkar NL, Burdick JA, Elliott DM, Mauck RL. Fabrication and modeling of dynamic multipolymer nanofibrous scaffolds. Journal of Biomechanical Engineering. 131: 101012. PMID 19831482 DOI: 10.1115/1.3192140  0.115
2010 Baker BM, Nathan AS, Gee AO, Mauck RL. The influence of an aligned nanofibrous topography on human mesenchymal stem cell fibrochondrogenesis. Biomaterials. 31: 6190-200. PMID 20494438 DOI: 10.1016/J.Biomaterials.2010.04.036  0.113
2014 Abhilash AS, Baker BM, Trappmann B, Chen CS, Shenoy VB. Remodeling of fibrous extracellular matrices by contractile cells: predictions from discrete fiber network simulations. Biophysical Journal. 107: 1829-40. PMID 25418164 DOI: 10.1016/J.Bpj.2014.08.029  0.111
2012 Huang AH, Baker BM, Ateshian GA, Mauck RL. Sliding contact loading enhances the tensile properties of mesenchymal stem cell-seeded hydrogels. European Cells & Materials. 24: 29-45. PMID 22791371 DOI: 10.22203/Ecm.V024A03  0.111
2009 Lu RJ, Tucker JA, Pickens J, Ma YA, Zinevitch T, Kirichenko O, Konoplev V, Kuznetsova S, Sviridov S, Brahmachary E, Khasanov A, Mikel C, Yang Y, Liu C, Wang J, ... ... Baker B, et al. Heterobiaryl human immunodeficiency virus entry inhibitors. Journal of Medicinal Chemistry. 52: 4481-7. PMID 19534463 DOI: 10.1021/Jm900330X  0.108
2012 Baker BM, Choi CK, Trappmann B, Chen CS. Engineered fibrillar extracellular matrices for the study of directed cell migration Asme 2012 Summer Bioengineering Conference, Sbc 2012. 1303-1304. DOI: 10.1115/SBC2012-80943  0.105
2012 Baker BM, Chen CS. Deconstructing the third dimension: how 3D culture microenvironments alter cellular cues. Journal of Cell Science. 125: 3015-24. PMID 22797912 DOI: 10.1242/Jcs.079509  0.104
2008 Tan AR, Ifkovits JL, Baker BM, Brey DM, Mauck RL, Burdick JA. Electrospinning of photocrosslinked and degradable fibrous scaffolds. Journal of Biomedical Materials Research. Part A. 87: 1034-43. PMID 18257065 DOI: 10.1002/Jbm.A.31853  0.102
2012 Baker BM, Shah RP, Silverstein AM, Esterhai JL, Burdick JA, Mauck RL. Sacrificial nanofibrous composites provide instruction without impediment and enable functional tissue formation. Proceedings of the National Academy of Sciences of the United States of America. 109: 14176-81. PMID 22872864 DOI: 10.1073/Pnas.1206962109  0.098
2012 Baker BM, Nargund AM, Sun T, Haynes CM. Protective coupling of mitochondrial function and protein synthesis via the eIF2α kinase GCN-2. Plos Genetics. 8: e1002760. PMID 22719267 DOI: 10.1371/Journal.Pgen.1002760  0.094
2013 Kim IL, Khetan S, Baker BM, Chen CS, Burdick JA. Fibrous hyaluronic acid hydrogels that direct MSC chondrogenesis through mechanical and adhesive cues. Biomaterials. 34: 5571-80. PMID 23623322 DOI: 10.1016/J.Biomaterials.2013.04.004  0.09
2002 Kho R, Hansen M, Baker B, Newman J, Sem DS, Jack R, Villar H. Elucidation of Protein Structural and Pharmacophore Features Based on Sequence Clustering by Common Neighbor Comparisons. Thescientificworldjournal. 2: 17-18. PMID 29973783 DOI: 10.1100/tsw.2002.9  0.089
2008 Baker BM, Gee AO, Metter RB, Nathan AS, Marklein RA, Burdick JA, Mauck RL. The potential to improve cell infiltration in composite fiber-aligned electrospun scaffolds by the selective removal of sacrificial fibers. Biomaterials. 29: 2348-58. PMID 18313138 DOI: 10.1016/J.Biomaterials.2008.01.032  0.089
2009 Baker BM, Nathan AS, Huffman GR, Mauck RL. Tissue engineering with meniscus cells derived from surgical debris. Osteoarthritis and Cartilage / Oars, Osteoarthritis Research Society. 17: 336-45. PMID 18848784 DOI: 10.1016/J.Joca.2008.08.001  0.088
1994 Baker BM, Handelman DE. SU(2)-equivariant k-theory of a class of C*-algebras and nonhomogeneous random walks K-Theory. 8: 499-540. DOI: 10.1007/BF00961403  0.087
2005 Folker ES, Baker BM, Goodson HV. Interactions between CLIP-170, tubulin, and microtubules: implications for the mechanism of Clip-170 plus-end tracking behavior. Molecular Biology of the Cell. 16: 5373-84. PMID 16120651 DOI: 10.1091/Mbc.E04-12-1106  0.087
2012 Gee AO, Baker BM, Silverstein AM, Montero G, Esterhai JL, Mauck RL. Fabrication and evaluation of biomimetic-synthetic nanofibrous composites for soft tissue regeneration. Cell and Tissue Research. 347: 803-13. PMID 22287042 DOI: 10.1007/S00441-011-1308-1  0.086
2009 Baker BM, Handorf AM, Ionescu LC, Li WJ, Mauck RL. New directions in nanofibrous scaffolds for soft tissue engineering and regeneration. Expert Review of Medical Devices. 6: 515-32. PMID 19751124 DOI: 10.1586/Erd.09.39  0.086
1983 Baker BM, Powers RT. Product states and C*-dynamical system of product type Journal of Functional Analysis. 50: 229-266. DOI: 10.1016/0022-1236(83)90069-1  0.084
2007 Baker BM, Nathan AS, Sheth NP, Huffman GR, Mauck RL. Autologous human fibrochondrocytes from meniscectomy debris are a potent cell source for meniscus tissue engineering Proceedings of the Asme Summer Bioengineering Conference 2007, Sbc 2007. 1025-1026.  0.084
2011 Baker BM, Shah RP, Huang AH, Mauck RL. Dynamic tensile loading improves the functional properties of mesenchymal stem cell-laden nanofiber-based fibrocartilage. Tissue Engineering. Part A. 17: 1445-55. PMID 21247342 DOI: 10.1089/Ten.Tea.2010.0535  0.084
2009 Mauck RL, Baker BM, Nerurkar NL, Burdick JA, Li WJ, Tuan RS, Elliott DM. Engineering on the straight and narrow: the mechanics of nanofibrous assemblies for fiber-reinforced tissue regeneration. Tissue Engineering. Part B, Reviews. 15: 171-93. PMID 19207040 DOI: 10.1089/Ten.Teb.2008.0652  0.083
2018 Vennapusa B, Baker B, Kowanetz M, Boone J, Menzl I, Bruey JM, Fine G, Mariathasan S, McCaffery I, Mocci S, Rost S, Smith D, Dennis E, Tang SY, Damadzadeh B, et al. Development of a PD-L1 Complementary Diagnostic Immunohistochemistry Assay (SP142) for Atezolizumab. Applied Immunohistochemistry & Molecular Morphology : Aimm. PMID 29346180 DOI: 10.1097/PAI.0000000000000594  0.083
2003 Singer JW, Baker B, De Vries P, Kumar A, Shaffer S, Vawter E, Bolton M, Garzone P. Poly-(L)-glutamic acid-paclitaxel (CT-2103) [XYOTAX™], a biodegradable polymeric drug conjugate: Characterization, preclinical pharmacology, and preliminary clinical data Advances in Experimental Medicine and Biology. 519: 81-99. PMID 12675210 DOI: 10.1007/0-306-47932-X_6  0.082
2009 Nerurkar NL, Baker BM, Sen S, Wible EE, Elliott DM, Mauck RL. Nanofibrous biologic laminates replicate the form and function of the annulus fibrosus. Nature Materials. 8: 986-92. PMID 19855383 DOI: 10.1038/Nmat2558  0.081
2009 Baker BM, Gee AO, Sheth NP, Huffman GR, Sennett BJ, Schaer TP, Mauck RL. Meniscus tissue engineering on the nanoscale: from basic principles to clinical application. The Journal of Knee Surgery. 22: 45-59. PMID 19216353 DOI: 10.1055/S-0030-1247727  0.08
2013 Wang C, Baker BM, Chen CS, Schwartz MA. Endothelial cell sensing of flow direction. Arteriosclerosis, Thrombosis, and Vascular Biology. 33: 2130-6. PMID 23814115 DOI: 10.1161/Atvbaha.113.301826  0.078
2009 Nathan AS, Baker BM, Mauck RL. Cytoskeletal control of mesenchymal stem cell nuclear deformation on nanofibrous scaffolds Proceedings of the Asme Summer Bioengineering Conference 2009, Sbc2009. 773-774. DOI: 10.1115/SBC2009-206855  0.076
2011 Baker BM, Haynes CM. Mitochondrial protein quality control during biogenesis and aging. Trends in Biochemical Sciences. 36: 254-61. PMID 21353780 DOI: 10.1016/J.Tibs.2011.01.004  0.074
2014 Baker BM, Trappmann B, Chen CS, Nair AS, Kim IL, Burdick JA, Shenoy VB. Mesenchymal stem cell mechanosensing in engineered fibrillar microenvironments Proceedings of the Ieee Annual Northeast Bioengineering Conference, Nebec. 2014. DOI: 10.1109/NEBEC.2014.6972718  0.073
2011 Nerurkar NL, Sen S, Baker BM, Elliott DM, Mauck RL. Dynamic culture enhances stem cell infiltration and modulates extracellular matrix production on aligned electrospun nanofibrous scaffolds. Acta Biomaterialia. 7: 485-91. PMID 20728589 DOI: 10.1016/J.Actbio.2010.08.011  0.072
1995 KLINE RP, BAKER BM. A DYNAMICAL SYSTEMS APPROACH TO MEMBRANE PHENOMENA UNDERLYING CARDIAC ARRHYTHMIAS International Journal of Bifurcation and Chaos. 5: 75-88. DOI: 10.1142/S0218127495000065  0.071
2003 Bhatt R, De Vries P, Tulinsky J, Bellamy G, Baker B, Singer JW, Klein P. Synthesis and in vivo antitumor activity of poly(L-glutamic acid) conjugates of 20(S)-camptothecin Journal of Medicinal Chemistry. 46: 190-193. PMID 12502373 DOI: 10.1021/jm020022r  0.069
2005 Singer JW, Shaffer S, Baker B, Bernareggi A, Stromatt S, Nienstedt D, Besman M. Paclitaxel poliglumex (XYOTAX; CT-2103): An intracellularly targeted taxane Anti-Cancer Drugs. 16: 243-254. PMID 15711176 DOI: 10.1097/00001813-200503000-00003  0.069
2014 Blakely BL, Dumelin CE, Trappmann B, McGregor LM, Choi CK, Anthony PC, Duesterberg VK, Baker BM, Block SM, Liu DR, Chen CS. A DNA-based molecular probe for optically reporting cellular traction forces. Nature Methods. 11: 1229-32. PMID 25306545 DOI: 10.1038/Nmeth.3145  0.067
2014 Ruther RE, Baker BM, Son JH, Casey WH, Nyman M. Hafnium sulfate prenucleation clusters and the Hf(18) polyoxometalate red herring. Inorganic Chemistry. 53: 4234-42. PMID 24694085 DOI: 10.1021/Ic500375V  0.066
2013 Baker BM, Trappmann B, Kim IL, Burdick JA, Chen CS. Engineered fibrillar microenvironments with controllable architecture and mechanics for studying cellular stiffness sensing Asme 2013 Summer Bioengineering Conference, Sbc 2013. 1. DOI: 10.1115/SBC2013-14804  0.065
1980 Baker BM, Cunningham CA. Vocal rehabilitation of the patient with a laryngectomy. III. Specific techniques in laryngectomee vocal rehabilitation. Oncology Nursing Forum. 7: 33-6. PMID 6904029  0.064
2009 Baker BM, Montera G, Mauck RL. Removal of sacrificial fibers enhances long term cell and matrix distribution in aligned nanofibrous scaffolds Proceedings of the Asme Summer Bioengineering Conference 2009, Sbc2009. 321-322. DOI: 10.1115/SBC2009-206856  0.063
2010 Baker BM, Shah RP, Mauck RL. Dynamic tensile loading improves the mechanical properties of msc-laden aligned nanofibrous scaffolds Asme 2010 Summer Bioengineering Conference, Sbc 2010. 377-378. DOI: 10.1115/SBC2010-19447  0.061
2020 Baker B, Schaeffler B, Beliveau M, Rubets I, Pederson S, Trinh M, Smith J, Latham J. Population pharmacokinetic and exposure-response analysis of eptinezumab in the treatment of episodic and chronic migraine. Pharmacology Research & Perspectives. 8: e00567. PMID 32155317 DOI: 10.1002/prp2.567  0.061
2010 Huang AH, Farrell MJ, Erickson IE, Kim M, Baker BM, Burdick JA, Mauck RL. Mechanical stimulation enhances functional mesenchymal stem cell chondrogenesis in 3D culture European Cells and Materials. 20: 19.  0.061
2012 Miller JS, Stevens KR, Yang MT, Baker BM, Nguyen DH, Cohen DM, Toro E, Chen AA, Galie PA, Yu X, Chaturvedi R, Bhatia SN, Chen CS. Rapid casting of patterned vascular networks for perfusable engineered three-dimensional tissues. Nature Materials. 11: 768-74. PMID 22751181 DOI: 10.1038/Nmat3357  0.061
2013 Baker BM, Trappmann B, Stapleton SC, Toro E, Chen CS. Microfluidics embedded within extracellular matrix to define vascular architectures and pattern diffusive gradients. Lab On a Chip. 13: 3246-52. PMID 23787488 DOI: 10.1039/C3Lc50493J  0.061
1980 Cunningham CA, Baker BM. Vocal rehabilitation of the patient with a laryngectomy. II. Assessment for vocal rehabilitation. Oncology Nursing Forum. 7: 28-36. PMID 6904028  0.06
2007 Baker BM, O'Connell GD, Sen S, Nathan AS, Elliott DM, Mauck RL. Multi-lamellar and multi-axial maturation of cell-seeded fiber-reinforced tissue engineered constructs Proceedings of the Asme Summer Bioengineering Conference 2007, Sbc 2007. 1013-1014.  0.057
2021 Harris RJ, Baginski SG, Bronstein Y, Kim S, Lohr J, Towey S, Velichkovich Z, Kabachenko T, Driscoll I, Baker B. Measurement of Endotracheal Tube Positioning on Chest X-Ray Using Object Detection. Journal of Digital Imaging. PMID 34322753 DOI: 10.1007/s10278-021-00495-6  0.057
2007 Baker BM, Mauck RL. The effect of nanofiber alignment on the maturation of engineered meniscus constructs. Biomaterials. 28: 1967-77. PMID 17250888 DOI: 10.1016/J.Biomaterials.2007.01.004  0.057
2019 Li J, Solianyk L, Schmidt N, Baker B, Gottardi S, Moreno Lopez JC, Enache M, Monjas L, van der Vlag R, Havenith RWA, Hirsch AKH, Stöhr M. Low-Dimensional Metal-Organic Coordination Structures on Graphene. The Journal of Physical Chemistry. C, Nanomaterials and Interfaces. 123: 12730-12735. PMID 31156737 DOI: 10.1021/Acs.Jpcc.9B00326  0.055
2011 Tobe SW, Baker B, Hunter K, Kiss A, Perkins N, Gomez L, Feng Y, Wigg K, Barr CL. The impact of endothelin-1 genetic analysis and job strain on ambulatory blood pressure. Journal of Psychosomatic Research. 71: 97-101. PMID 21767690 DOI: 10.1016/j.jpsychores.2011.01.003  0.054
2006 Nerurkar NL, Baker BM, Chen CY, Elliott DM, Mauck RL. Engineering of fiber-reinforced tissues with anisotropic biodegradable nanofibrous scaffolds. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 787-90. PMID 17946860 DOI: 10.1109/IEMBS.2006.259395  0.052
1996 Baker BM. A case for permitting altruistic surrogacy. Hypatia. 11: 34-48. PMID 11865873  0.051
2019 Harris RJ, Kim S, Lohr J, Towey S, Velichkovich Z, Kabachenko T, Driscoll I, Baker B. Classification of Aortic Dissection and Rupture on Post-contrast CT Images Using a Convolutional Neural Network. Journal of Digital Imaging. PMID 31515752 DOI: 10.1007/s10278-019-00281-5  0.051
2019 Caldwell R, Street MG, Sharma R, Takmakov P, Baker B, Rieth L. Characterization of Parylene-C degradation mechanisms: In vitro reactive accelerated aging model compared to multiyear in vivo implantation. Biomaterials. 232: 119731. PMID 31918225 DOI: 10.1016/J.Biomaterials.2019.119731  0.05
2009 Gee AO, Baker BM, Mauck RL. Mechanics and cytocompatibility of genipin crosslinked type I collagen nanofibrous scaffolds Proceedings of the Asme Summer Bioengineering Conference, Sbc2008. 703-704.  0.049
2012 Nargund AM, Pellegrino MW, Fiorese CJ, Baker BM, Haynes CM. Mitochondrial import efficiency of ATFS-1 regulates mitochondrial UPR activation. Science (New York, N.Y.). 337: 587-90. PMID 22700657 DOI: 10.1126/Science.1223560  0.048
2009 Baker BM, Block BL, Rothchild AC, Walker BD. Elite control of HIV infection: implications for vaccine design. Expert Opinion On Biological Therapy. 9: 55-69. PMID 19063693 DOI: 10.1517/14712590802571928  0.046
2023 Fernando SI, Martineau JT, Hobson RJ, Vu TN, Baker B, Mueller BD, Menon R, Jorgensen EM, Gerton JM. Simultaneous spectral differentiation of multiple fluorophores in super-resolution imaging using a glass phase plate. Optics Express. 31: 33565-33581. PMID 37859135 DOI: 10.1364/OE.499929  0.045
1991 Baker BM, Fraser AM, Baker CD. Long-term postoperative dysphagia in oral/pharyngeal surgery patients: subjects' perceptions vs. videofluoroscopic observations. Dysphagia. 6: 11-6. PMID 1884633 DOI: 10.1007/BF02503458  0.045
2010 Huang AH, Baker BM, Ateshian GA, Mauck RL. Sliding contact loading improves the tensile properties of mscbased engineered cartilage Asme 2010 Summer Bioengineering Conference, Sbc 2010. 191-192. DOI: 10.1115/SBC2010-19292  0.045
2005 Li X, Zhou Y, Sutherland TC, Baker B, Lee JS, Kraatz HB. Chip-based microelectrodes for detection of single-nucleotide mismatch. Analytical Chemistry. 77: 5766-9. PMID 16131094 DOI: 10.1021/Ac050741O  0.045
2006 Frasure-Smith N, Koszycki D, Swenson JR, Baker B, van Zyl LT, Laliberté MA, Abramson BL, Lambert J, Gravel G, Lespérance F. Design and rationale for a randomized, controlled trial of interpersonal psychotherapy and citalopram for depression in coronary artery disease (CREATE). Psychosomatic Medicine. 68: 87-93. PMID 16449416 DOI: 10.1097/01.Psy.0000195833.68482.27  0.044
2022 Calderwood S, Sabir A, Rao L, Baker B, Balasa V, Sathi BK. SARS-CoV-2 Infection Presenting as Acute Chest Syndrome in a Child With Hemoglobin SD-Los Angeles Disease: A Case Report and Review of Literature. Journal of Pediatric Hematology/Oncology. PMID 36162052 DOI: 10.1097/MPH.0000000000002546  0.044
2009 Yazgi Tütüncü G, Carreto CAC, Baker BM. A visual interactive approach to classical and mixed vehicle routing problems with backhauls Omega. 37: 138-154. DOI: 10.1016/j.omega.2006.11.001  0.044
2019 Gely MF, Kounalakis M, Dickel C, Dalle J, Vatré R, Baker B, Jenkins MD, Steele GA. Observation and stabilization of photonic Fock states in a hot radio-frequency resonator. Science (New York, N.Y.). 363: 1072-1075. PMID 30846596 DOI: 10.1126/science.aaw3101  0.044
2003 Baker BM, Carreto CAC. A visual interactive approach to vehicle routing Computers and Operations Research. 30: 321-337. DOI: 10.1016/S0305-0548(01)00099-5  0.042
2021 Gertler JM, Baker B, Li J, Shirol S, Koch J, Wang C. Protecting a bosonic qubit with autonomous quantum error correction. Nature. 590: 243-248. PMID 33568826 DOI: 10.1038/s41586-021-03257-0  0.042
1995 Baker BM, Smith JM, Cain ME. Nonpharmacologic approaches to the treatment of atrial fibrillation and atrial flutter. Journal of Cardiovascular Electrophysiology. 6: 972-8. PMID 8548118  0.041
2010 Baker BM, Silverstein AM, Shah RP, Mauck RL. Engineering the functional maturation of nanofiber-based human meniscus tissue Asme 2010 Summer Bioengineering Conference, Sbc 2010. 941-942. DOI: 10.1115/SBC2010-19685  0.039
1985 Maldonado AR, Baker BM, Judson WF. Palatal insufficiency: a surgical technique for reconstruction. Southern Medical Journal. 78: 954-7. PMID 4023788  0.039
2007 Lespérance F, Frasure-Smith N, Koszycki D, Laliberté MA, van Zyl LT, Baker B, Swenson JR, Ghatavi K, Abramson BL, Dorian P, Guertin MC. Effects of citalopram and interpersonal psychotherapy on depression in patients with coronary artery disease: the Canadian Cardiac Randomized Evaluation of Antidepressant and Psychotherapy Efficacy (CREATE) trial. Jama. 297: 367-79. PMID 17244833 DOI: 10.1001/Jama.297.4.367  0.038
2004 Winans GA, Paquin MM, Van Doornik DM, Baker BM, Thornton P, Rawding D, Marshall A, Moran P, Kalinowski S. Genetic stock identification of steelhead in the Columbia River Basin: An evaluation of different molecular markers North American Journal of Fisheries Management. 24: 672-685. DOI: 10.1577/M03-052.1  0.038
2003 Baker B, Evans M, DeCastro F, Schosser R. Leprosy in a Mexican immigrant. The Journal of the Kentucky Medical Association. 101: 289-94. PMID 12886712  0.036
2017 Shareef AR, Lin Z, Emanuele K, Healey S, Regan P, Baker B. Rapid detection of enriched uranium in food. Applied Radiation and Isotopes : Including Data, Instrumentation and Methods For Use in Agriculture, Industry and Medicine. PMID 28347548 DOI: 10.1016/j.apradiso.2017.03.007  0.036
2002 Blackwell PB, Baker BM. Estimating communication competence of infants and toddlers. Journal of Pediatric Health Care : Official Publication of National Association of Pediatric Nurse Associates & Practitioners. 16: 29-35. PMID 11802119 DOI: 10.1067/mph.2002.115137  0.036
1982 Baker BM, Baker CD, Le HT. Vocal quality, articulation and audiological characteristics of children and young adults with diagnosed allergies. The Annals of Otology, Rhinology, and Laryngology. 91: 277-80. PMID 7092048 DOI: 10.1177/000348948209100310  0.034
2021 Kigner O, Meem M, Baker B, Banerji S, Hon PWC, Sensale-Rodriguez B, Menon R. Monolithic all-silicon flat lens for broadband LWIR imaging. Optics Letters. 46: 4069-4071. PMID 34388813 DOI: 10.1364/OL.426384  0.034
2021 Cury RC, Megyeri I, Lindsey T, Macedo R, Batlle J, Kim S, Baker B, Harris R, Clark RH. Natural Language Processing and Machine Learning for Detection of Respiratory Illness by Chest CT Imaging and Tracking of COVID-19 Pandemic in the US. Radiology. Cardiothoracic Imaging. 3: e200596. PMID 33778666 DOI: 10.1148/ryct.2021200596  0.033
2003 Baker B, Khaykin Y, Devins G, Dorian P, Shapiro C, Newman D. Correlates of therapeutic response in panic disorder presenting with palpitations: heart rate variability, sleep, and placebo effect. Canadian Journal of Psychiatry. Revue Canadienne De Psychiatrie. 48: 381-7. PMID 12894612 DOI: 10.1177/070674370304800604  0.033
2000 Fisher AJ, Baker BM, Greenberg JP, Fall R. Enzymatic synthesis of methylbutenol from dimethylallyl diphosphate in needles of Pinus sabiniana. Archives of Biochemistry and Biophysics. 383: 128-34. PMID 11097185 DOI: 10.1006/Abbi.2000.2051  0.032
2004 Baker BM, Blackwell PB. Identification and remediation of pediatric fluency and voice disorders. Journal of Pediatric Health Care : Official Publication of National Association of Pediatric Nurse Associates & Practitioners. 18: 87-94. PMID 15007292 DOI: 10.1016/j.pedhc.2003.09.008  0.032
1978 Baker BM. Free states of the gauge invariant canonical anticommutation relations Transactions of the American Mathematical Society. 237: 35-35. DOI: 10.1090/S0002-9947-1978-0479361-6  0.031
2013 Potosnak MJ, Baker BM, Lestourgeon L, Disher SM, Griffin KL, Bret-Harte MS, Starr G. Isoprene emissions from a tundra ecosystem Biogeosciences. 10: 871-889. DOI: 10.5194/Bg-10-871-2013  0.031
2007 O'Connell GD, Sen S, Baker BM, Mauck RL, Elliott DM. Biaxial mechanics of musculoskeletal tissue and fiber-reinforced scaffolds Proceedings of the Asme Summer Bioengineering Conference 2007, Sbc 2007. 935-936.  0.031
2007 Metter RB, Baker BM, Burdick JA, Mauck RL. Enhanced cellular infiltration with removal of sacrificial fibers from a dual-polymer nanofibrous scaffold Proceedings of the Asme Summer Bioengineering Conference 2007, Sbc 2007. 1017-1018.  0.031
2023 Jain R, Stone JA, Agarwal G, Andrade JG, Bacon SL, Bajaj HS, Baker B, Cheng G, Dannenbaum D, Gelfer M, Habert J, Hickey J, Keshavjee K, Kitty D, Lindsay P, et al. [Not Available]. Cmaj : Canadian Medical Association Journal = Journal De L'Association Medicale Canadienne. 195: E21-E42. PMID 36623864 DOI: 10.1503/cmaj.220138-f  0.031
2007 Tan AR, Ifkovits JL, Baker BM, Mauck RL, Burdick JA. Electrospinning of photopolymerizable poly(β-amino ester) networks for fibrous tissue engineering Proceedings of the Asme Summer Bioengineering Conference 2007, Sbc 2007. 997-998.  0.031
2022 Onyango D, Mchembere W, Agaya J, Wang A, Cain KP, Grobbee DE, van der Sande MA, Baker B, Yuen CM. Reaching 95-95-95 targets: The role of private sector health facilities in closing the HIV detection gap-Kisumu Kenya, 2018. International Journal of Std & Aids. 9564624221076953. PMID 35225096 DOI: 10.1177/09564624221076953  0.03
2010 Habra ME, Baker B, Frasure-Smith N, Swenson JR, Koszycki D, Butler G, van Zyl LT, Lespérance F. First episode of major depressive disorder and vascular factors in coronary artery disease patients: Baseline characteristics and response to antidepressant treatment in the CREATE trial. Journal of Psychosomatic Research. 69: 133-41. PMID 20624511 DOI: 10.1016/J.Jpsychores.2010.02.010  0.03
2008 Price RW, Parham R, Kroll JL, Wring SA, Baker B, Sailstad J, Hoh R, Liegler T, Spudich S, Kuritzkes DR, Deeks SG. Enfuvirtide cerebrospinal fluid (CSF) pharmacokinetics and potential use in defining CSF HIV-1 origin Antiviral Therapy. 13: 369-374. PMID 18572749  0.029
2012 Alosaimi FD, Baker B. Clinical review of treatment options for major depressive disorder in patients with coronary heart disease. Saudi Medical Journal. 33: 1159-68. PMID 23147871  0.029
1992 Williams AI, Baker BM. Advances in burn care management: role of the speech-language pathologist. The Journal of Burn Care & Rehabilitation. 13: 642-9. PMID 1469029  0.029
1980 Baker BM. Expiration dates, sterile or unsterile? That is the question. Hospital Topics. 58: 34-5. PMID 10248986 DOI: 10.1080/00185868.1980.9954841  0.027
2018 Baker B. What's New. Ecohealth. PMID 30311015 DOI: 10.1007/s10393-018-1376-8  0.027
2004 Smaby N, Johanson ME, Baker B, Kenney DE, Murray WM, Hentz VR. Identification of key pinch forces required to complete functional tasks. Journal of Rehabilitation Research and Development. 41: 215-24. PMID 15558375 DOI: 10.1682/JRRD.2004.02.0215  0.027
1995 Baker BM, Botteron GW, Smith JM. Low-energy internal cardioversion for atrial fibrillation resistant to external cardioversion. Journal of Cardiovascular Electrophysiology. 6: 44-7. PMID 7743009  0.026
2009 Baker BM, Kidwell ME, Kline RP, Popovici I. On two-dimensional dynamical systems associated with membrane kinetics underlying cardiac arrhythmias International Journal of Bifurcation and Chaos. 19: 1709-1732. DOI: 10.1142/S0218127409023792  0.024
2012 Blom K, How M, Dai M, Baker B, Irvine J, Abbey S, Abramson BL, Myers M, Perkins N, Tobe SW. Hypertension Analysis of stress Reduction using Mindfulness meditatiON and Yoga (The HARMONY Study): study protocol of a randomised control trial. Bmj Open. 2: e000848. PMID 22396225 DOI: 10.1136/bmjopen-2012-000848  0.024
1984 Baker BM. Studies of experimental colon cancer. Transactions of the American Clinical and Climatological Association. 95: 191-5. PMID 6679137  0.024
2022 Harris RJ, Baginski SG, Bronstein Y, Schultze D, Segel K, Kim S, Lohr J, Towey S, Shahi N, Driscoll I, Baker B. Detection Of Critical Spinal Epidural Lesions on CT Using Machine Learning. Spine. PMID 35905328 DOI: 10.1097/BRS.0000000000004438  0.024
2004 Baker B, Szalai JP, Paquette M, Tobe S. Marital support, spousal contact and the course of mild hypertension. Journal of Psychosomatic Research. 55: 229-33. PMID 12932796 DOI: 10.1016/s0022-3999(02)00551-2  0.024
2006 Reisenbichler RR, Hayes MC, Rubin SP, Wetzel LA, Baker BM. PEPA-1* genotype affects return rate for hatchery steelhead Transactions of the American Fisheries Society. 135: 28-39. DOI: 10.1577/T04-222.1  0.024
2013 Daniel C, Baker B. Dispersal of Rhagoletis cerasi in Commercial Cherry Orchards: Efficacy of Soil Covering Nets for Cherry Fruit Fly Control. Insects. 4: 168-76. PMID 26466801 DOI: 10.3390/insects4010168  0.023
2007 Eshkevari L, Baker BM. Occurrence and removal of a knotted pulmonary artery catheter: a case report. Aana Journal. 75: 423-8. PMID 18179002  0.023
1980 Baker BM, Baker CD. Difficulties generated by allergies. The Journal of School Health. 50: 583-5. PMID 6160318  0.022
1981 Baker BM, Fox SM, Baker CD, McMurry GT. Persistent hoarseness after surgical removal of vocal cord lesions. Archives of Otolaryngology (Chicago, Ill. : 1960). 107: 148-51. PMID 7469902 DOI: 10.1001/archotol.1981.00790390014005  0.021
2004 Gottlieb SS, Khatta M, Friedmann E, Einbinder L, Katzen S, Baker B, Marshall J, Minshall S, Robinson S, Fisher ML, Potenza M, Sigler B, Baldwin C, Thomas SA. The influence of age, gender, and race on the prevalence of depression in heart failure patients. Journal of the American College of Cardiology. 43: 1542-9. PMID 15120809 DOI: 10.1016/J.Jacc.2003.10.064  0.02
2014 Brenkman SJ, Duda JJ, Kennedy PR, Baker BM. A legacy of divergent fishery management regimes and the resilience of rainbow and cutthroat trout populations in Lake Crescent, Olympic National Park, Washington Northwest Science. 88: 280-304. DOI: 10.3955/046.088.0404  0.02
2010 Baker BM, Silverstein AM, Mauck RL. Engineering dense connective tissues via anisotropic nanofibrous scaffolds with high sacrificial fiber content Proceedings of the Asme 1st Global Congress On Nanoengineering For Medicine and Biology 2010, Nemb2010. 183-184.  0.02
1996 Baker BM, Lindsay BD, Bromberg BI, Frazier DW, Cain ME, Smith JM. Catheter ablation of clinical intraatrial reentrant tachycardias resulting from previous atrial surgery: localizing and transecting the critical isthmus. Journal of the American College of Cardiology. 28: 411-7. PMID 8800118 DOI: 10.1016/0735-1097(96)00154-4  0.019
2022 Jain R, Stone JA, Agarwal G, Andrade JG, Bacon SL, Bajaj HS, Baker B, Cheng G, Dannenbaum D, Gelfer M, Habert J, Hickey J, Keshavjee K, Kitty D, Lindsay P, et al. Canadian Cardiovascular Harmonized National Guideline Endeavour (C-CHANGE) guideline for the prevention and management of cardiovascular disease in primary care: 2022 update. Cmaj : Canadian Medical Association Journal = Journal De L'Association Medicale Canadienne. 194: E1460-E1480. PMID 36343954 DOI: 10.1503/cmaj.220138  0.019
1991 Baker BM, Handelman DE. Positive Polynomials and Time Dependent Integer-Valued Random Variables Canadian Journal of Mathematics. 44: 3-41. DOI: 10.4153/cjm-1992-001-6  0.018
1988 Baker BM. Instrumentation for objective assessments of vocal quality. Entechnology. 58-63. PMID 3271578  0.017
2009 Ionescu LC, Baker BM, Burdick JA, Mauck RL. A composite microsphere/nanofiber controlled release system for fibrous tissue engineering Proceedings of the Asme Summer Bioengineering Conference 2009, Sbc2009. 793-794. DOI: 10.1115/SBC2009-205474  0.017
1989 Cunningham DR, Baker BM, Steckol KF, Windmill IM. The unification model. Asha. 31: 87-9. PMID 2675858  0.017
1978 Baker BM. Memorial: Lay Martin. Transactions of the American Clinical and Climatological Association. 89: xl-xli. PMID 360564  0.016
2019 Faggioni M, Baber U, Chandrasekhar J, Sartori S, Weintraub W, Rao SV, Vogel B, Claessen B, Kini A, Effron M, Ge Z, Keller S, Strauss C, Snyder C, Toma C, ... ... Baker B, et al. Use of prasugrel and clinical outcomes in African-American patients treated with percutaneous coronary intervention for acute coronary syndromes. Catheterization and Cardiovascular Interventions : Official Journal of the Society For Cardiac Angiography & Interventions. PMID 30656812 DOI: 10.1002/ccd.28033  0.016
2018 Faggioni M, Baber U, Chandrasekhar J, Sartori S, Claessen BE, Rao SV, Vogel B, Effron MB, Poddar K, Farhan S, Kini A, Weintraub W, Toma C, Sorrentino S, Weiss S, ... ... Baker B, et al. Use of prasugrel vs clopidogrel and outcomes in patients with and without diabetes mellitus presenting with acute coronary syndrome undergoing percutaneous coronary intervention. International Journal of Cardiology. PMID 30391067 DOI: 10.1016/j.ijcard.2018.10.071  0.015
1980 Baker BM, Ross RS. Memorial. E. Cowles Andrus. Transactions of the American Clinical and Climatological Association. 91: xxix-xxxi. PMID 399570  0.015
1977 Baker BM. A central supply technician training program. From a dream to a reality. Hospital Topics. 55: 3-4, 8-9. PMID 838501 DOI: 10.1080/00185868.1977.9950431  0.015
2001 Baker BM, Blackwell PB. Adult and infant vocalization: speaking valves used in individuals with tracheostomy and ventilator dependency. The Journal of the Kentucky Medical Association. 99: 193-203. PMID 11391898  0.015
2009 Baker BM, Nerurkar NL, Burdick JA, Elliott DM, Mauck RL. Fabrication and modeling of an electrospun tri-polymer composite for the engineering of fibrous tissues Proceedings of the Asme Summer Bioengineering Conference, Sbc2008. 973-974.  0.013
1968 Scarborough WR, Baker BM, Davis FW, Mason RE, Singewald ML, Sherwin RW. Ballistocardiography and coronary heart disease; prognostic evaluation based on a long-term follow-up study. Bibliotheca Cardiologica. 20: 57-81. PMID 5705114  0.012
1981 Cunningham DR, Lingwall JB, Steckol KF, Baker BM, Gore LB. Professional issues curriculum for audiology and speech-language pathology. Asha. 23: 885-97. PMID 6763865  0.012
2006 Tobe SW, Soberman H, Kiss A, Perkins N, Baker B. The effect of alcohol and gender on ambulatory blood pressure: results from the Baseline Double Exposure study. American Journal of Hypertension. 19: 136-9. PMID 16448881 DOI: 10.1016/j.amjhyper.2005.06.029  0.011
1969 Margolis S, Baker BM. Control of coronary heart disease--treatment of hyperlipidemia. The Johns Hopkins Medical Journal. 124: 224-30. PMID 5774147  0.011
2002 Irvine J, Dorian P, Baker B, O'Brien BJ, Roberts R, Gent M, Newman D, Connolly SJ. Quality of life in the Canadian Implantable Defibrillator Study (CIDS). American Heart Journal. 144: 282-9. PMID 12177646 DOI: 10.1067/mjh.2002.124049  0.011
2002 Baker BM. Certification debate [4] Computer. 35: 9-10.  0.011
2016 Chandrasekhar J, Baber U, Sartori S, Faggioni M, Aquino M, Kini A, Weintraub W, Rao S, Kapadia S, Weiss S, Strauss C, Toma C, Muhlestein B, DeFranco A, Effron M, ... ... Baker B, et al. Sex-related differences in outcomes among men and women under 55 years of age with acute coronary syndrome undergoing percutaneous coronary intervention: Results from the PROMETHEUS Study. Catheterization and Cardiovascular Interventions : Official Journal of the Society For Cardiac Angiography & Interventions. PMID 27152497 DOI: 10.1002/ccd.26606  0.011
1980 Baker BM, McMurry G. Surgical and vocal rehabilitation of laryngeal trauma. The Journal of the Kentucky Medical Association. 78: 543-6. PMID 7430769  0.011
1994 Shawcross SG, Baker BM, Strike P, Faulkner BM. A sodium fluoride sensitive mutant of Aspergillus nidulans Fungal Genetics Reports. 41: 81. DOI: 10.4148/1941-4765.1387  0.01
2014 Blom K, Baker B, How M, Dai M, Irvine J, Abbey S, Abramson BL, Myers MG, Kiss A, Perkins NJ, Tobe SW. Hypertension analysis of stress reduction using mindfulness meditation and yoga: Results from the harmony randomized controlled trial American Journal of Hypertension. 27: 122-129. PMID 24038797 DOI: 10.1093/ajh/hpt134  0.01
2011 Baker BM. William James, sciences of mind, and anti-imperial discourse William James, Sciences of Mind, and Anti-Imperial Discourse. 1-423. DOI: 10.1017/CBO9781139208765  0.01
2007 Tobe SW, Kiss A, Sainsbury S, Jesin M, Geerts R, Baker B. The impact of job strain and marital cohesion on ambulatory blood pressure during 1 year: the double exposure study. American Journal of Hypertension. 20: 148-53. PMID 17261459 DOI: 10.1016/j.amjhyper.2006.07.011  0.01
2005 Tobe SW, Kiss A, Szalai JP, Perkins N, Tsigoulis M, Baker B. Impact of job and marital strain on ambulatory blood pressure results from the double exposure study. American Journal of Hypertension. 18: 1046-51. PMID 16109318 DOI: 10.1016/j.amjhyper.2005.03.734  0.01
2003 Baker BM, Ayechew MA. A genetic algorithm for the vehicle routing problem Computers and Operations Research. 30: 787-800. DOI: 10.1016/S0305-0548(02)00051-5  0.01
1998 Baker BM. Symptoms, diagnosis, and management of dysphagia. The Journal of the Kentucky Medical Association. 96: 362-7. PMID 9769625  0.01
1981 Baker BM. How to develop a CSR quality assurance program. Hospital Topics. 59: 42-5. PMID 10252756 DOI: 10.1080/00185868.1981.9952412  0.01
1980 Baker BM, Cunningham CA. Vocal rehabilitation of the patient with a laryngectomy. I. Pre- and postoperative counseling. Oncology Nursing Forum. 7: 23-7. PMID 6159605  0.01
1978 Milnor WR, Baker BM, Boyer S. E. Cowles Andrus: 1896--1978. The Johns Hopkins Medical Journal. 142: 224-5. PMID 351258  0.01
1978 Baker BM, Boyer S, Ross RS. E. Cowles Andrus. Transactions of the Association of American Physicians. 91: 10-2. PMID 38554  0.01
1969 Sherwin RW, Harrison WK, Davis FW, Baker BM. Reproducibility of form readings of Starr and ultra low frequency ballistocardiograms. Bibliotheca Cardiologica. 24: 51-6. PMID 5771553  0.01
1968 Baker BM. Ballistocardiography: predictor of coronary heart disease. Circulation. 37: 1-3. PMID 5634725  0.01
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