Reto Fiolka - Publications

Affiliations: 
Cell Biology University of Texas Southwestern Medical Center, Dallas, TX, United States 

56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Roudot P, Legant WR, Zou Q, Dean KM, Isogai T, Welf ES, David AF, Gerlich DW, Fiolka R, Betzig E, Danuser G. u-track3D: Measuring, navigating, and validating dense particle trajectories in three dimensions. Cell Reports Methods. 100655. PMID 38042149 DOI: 10.1016/j.crmeth.2023.100655  0.568
2023 Chang BJ, Shepherd D, Fiolka R. Projective oblique plane structured illumination microscopy. Biorxiv : the Preprint Server For Biology. PMID 37609312 DOI: 10.1101/2023.08.08.552447  0.445
2023 Daetwyler S, Chang BJ, Chen B, Zhou F, Fiolka R. Mesoscopic Oblique Plane Microscopy via Light-sheet Mirroring. Biorxiv : the Preprint Server For Biology. PMID 37609162 DOI: 10.1101/2023.08.10.552834  0.409
2023 Daetwyler S, Fiolka RP. Light-sheets and smart microscopy, an exciting future is dawning. Communications Biology. 6: 502. PMID 37161000 DOI: 10.1038/s42003-023-04857-4  0.472
2023 Weems AD, Welf ES, Driscoll MK, Zhou FY, Mazloom-Farsibaf H, Chang BJ, Murali VS, Gihana GM, Weiss BG, Chi J, Rajendran D, Dean KM, Fiolka R, Danuser G. Blebs promote cell survival by assembling oncogenic signalling hubs. Nature. PMID 36859545 DOI: 10.1038/s41586-023-05758-6  0.674
2022 Chen B, Chang BJ, Zhou FY, Daetwyler S, Sapoznik E, Nanes BA, Terrazas I, Gihana GM, Castro LP, Chan IS, Conacci-Sorrell M, Dean KM, Millett-Sikking A, York AG, Fiolka R. Increasing the field-of-view in oblique plane microscopy via optical tiling. Biomedical Optics Express. 13: 5616-5627. PMID 36733723 DOI: 10.1364/BOE.467969  0.706
2022 Chen B, Chang BJ, Roudot P, Zhou F, Sapoznik E, Marlar-Pavey M, Hayes JB, Brown PT, Zeng CW, Lambert T, Friedman JR, Zhang CL, Burnette DT, Shepherd DP, Dean KM, ... Fiolka RP, et al. Resolution doubling in light-sheet microscopy via oblique plane structured illumination. Nature Methods. PMID 36280718 DOI: 10.1038/s41592-022-01635-8  0.703
2022 Segal D, Mazloom-Farsibaf H, Chang BJ, Roudot P, Rajendran D, Daetwyler S, Fiolka R, Warren M, Amatruda JF, Danuser G. In vivo 3D profiling of site-specific human cancer cell morphotypes in zebrafish. The Journal of Cell Biology. 221. PMID 36155740 DOI: 10.1083/jcb.202109100  0.53
2022 Perez-Castro L, Venkateswaran N, Garcia R, Hao YH, Lafita-Navarro MC, Kim J, Segal D, Saponzik E, Chang BJ, Fiolka R, Danuser G, Xu L, Brabletz T, Conacci-Sorrell M. The AHR target gene Scinderin activates the WNT pathway by facilitating the nuclear translocation of β-catenin. Journal of Cell Science. PMID 36148682 DOI: 10.1242/jcs.260028  0.46
2022 Dean KM, Chakraborty T, Daetwyler S, Lin J, Garrelts G, M'Saad O, Mekbib HT, Voigt FF, Schaettin M, Stoeckli ET, Helmchen F, Bewersdorf J, Fiolka R. Isotropic imaging across spatial scales with axially swept light-sheet microscopy. Nature Protocols. PMID 35831614 DOI: 10.1038/s41596-022-00706-6  0.71
2022 Yang B, Lange M, Millett-Sikking A, Zhao X, Bragantini J, VijayKumar S, Kamb M, Gómez-Sjöberg R, Solak AC, Wang W, Kobayashi H, McCarroll MN, Whitehead LW, Fiolka RP, Kornberg TB, et al. DaXi-high-resolution, large imaging volume and multi-view single-objective light-sheet microscopy. Nature Methods. PMID 35314838 DOI: 10.1038/s41592-022-01417-2  0.449
2021 Fiolka R. Light-sheet microscopy at high resolution. Nature Biotechnology. 39: 1345-1346. PMID 34635839 DOI: 10.1038/s41587-021-01101-4  0.339
2021 Liu H, Hiremath C, Patterson Q, Vora S, Shang Z, Jamieson A, Fiolka R, Dean K, Dellinger M, Marciano D. Heterozygous Mutation of Reduces Renal Lymphatics Without Renal Dysfunction. Journal of the American Society of Nephrology : Jasn. PMID 34551997 DOI: 10.1681/ASN.2021010061  0.521
2021 Chang BJ, Manton JD, Sapoznik E, Pohlkamp T, Terrones TS, Welf ES, Murali VS, Roudot P, Hake K, Whitehead L, York AG, Dean KM, Fiolka R. Real-time multi-angle projection imaging of biological dynamics. Nature Methods. PMID 34183831 DOI: 10.1038/s41592-021-01175-7  0.689
2020 Welf ES, Miles CE, Huh J, Sapoznik E, Chi J, Driscoll MK, Isogai T, Noh J, Weems AD, Pohlkamp T, Dean K, Fiolka R, Mogilner A, Danuser G. Actin-Membrane Release Initiates Cell Protrusions. Developmental Cell. PMID 33308479 DOI: 10.1016/j.devcel.2020.11.024  0.665
2020 Sapoznik E, Chang BJ, Huh J, Ju RJ, Azarova EV, Pohlkamp T, Welf ES, Broadbent D, Carisey AF, Stehbens SJ, Lee KM, Marin A, Hanker AB, Schmidt JC, Arteaga CL, ... ... Fiolka RP, et al. A versatile Oblique Plane Microscope for large-scale and high-resolution imaging of subcellular dynamics. Elife. 9. PMID 33179596 DOI: 10.7554/eLife.57681  0.715
2020 Lee KM, Guerrero-Zotano AL, Servetto A, Sudhan DR, Lin CC, Formisano L, Jansen VM, González-Ericsson P, Sanders ME, Stricker TP, Raj G, Dean KM, Fiolka R, Cantley LC, Hanker AB, et al. Proline rich 11 (PRR11) overexpression amplifies PI3K signaling and promotes antiestrogen resistance in breast cancer. Nature Communications. 11: 5488. PMID 33127913 DOI: 10.1038/s41467-020-19291-x  0.516
2020 Chakraborty T, Chen B, Daetwyler S, Chang BJ, Vanderpoorten O, Sapoznik E, Kaminski CF, Knowles TPJ, Dean KM, Fiolka R. Converting lateral scanning into axial focusing to speed up three-dimensional microscopy. Light, Science & Applications. 9: 165. PMID 33024553 DOI: 10.1038/s41377-020-00401-9  0.702
2020 Chen B, Chakraborty T, Daetwyler S, Manton JD, Dean K, Fiolka R. Extended depth of focus multiphoton microscopy via incoherent pulse splitting. Biomedical Optics Express. 11: 3830-3842. PMID 33014569 DOI: 10.1364/Boe.393931  0.681
2020 Chang BJ, Dean KM, Fiolka R. Systematic and quantitative comparison of lattice and Gaussian light-sheets. Optics Express. 28: 27052-27077. PMID 32906967 DOI: 10.1364/Oe.400164  0.66
2020 Manton JD, Ströhl F, Fiolka R, Kaminski CF, Rees EJ. Concepts for structured illumination microscopy with extended axial resolution through mirrored illumination. Biomedical Optics Express. 11: 2098-2108. PMID 32341869 DOI: 10.1364/Boe.382398  0.439
2020 Segal D, Chang B, Mazloom-Farsibaf H, Fiolka R, Amatruda J, Danuser G. Abstract PHB01: The zebrafish as a mechanical filter: Using zebrafish xenografts to model Ewing sarcoma metastasis in vivo Cancer Research. 80. DOI: 10.1158/1538-7445.Camodels2020-Phb01  0.597
2019 Chakraborty T, Driscoll MK, Jeffery E, Murphy MM, Roudot P, Chang BJ, Vora S, Wong WM, Nielson CD, Zhang H, Zhemkov V, Hiremath C, De La Cruz ED, Yi Y, Bezprozvanny I, ... ... Fiolka R, et al. Light-sheet microscopy of cleared tissues with isotropic, subcellular resolution. Nature Methods. 16: 1109-1113. PMID 31673159 DOI: 10.1038/S41592-019-0615-4  0.765
2019 Fiolka R. Author Correction: Resolution upgrades for light-sheet microscopy. Nature Methods. PMID 31520070 DOI: 10.1038/S41592-019-0588-3  0.374
2019 Driscoll MK, Welf ES, Jamieson AR, Dean KM, Isogai T, Fiolka R, Danuser G. Robust and automated detection of subcellular morphological motifs in 3D microscopy images. Nature Methods. PMID 31501548 DOI: 10.1038/S41592-019-0539-Z  0.721
2019 Fiolka R. Resolution upgrades for light-sheet microscopy. Nature Methods. PMID 31427758 DOI: 10.1038/S41592-019-0542-4  0.547
2019 Murali VS, Chang BJ, Fiolka R, Danuser G, Cobanoglu MC, Welf ES. An image-based assay to quantify changes in proliferation and viability upon drug treatment in 3D microenvironments. Bmc Cancer. 19: 502. PMID 31138163 DOI: 10.1186/S12885-019-5694-1  0.573
2019 Renkawitz J, Kopf A, Stopp J, de Vries I, Driscoll MK, Merrin J, Hauschild R, Welf ES, Danuser G, Fiolka R, Sixt M. Nuclear positioning facilitates amoeboid migration along the path of least resistance. Nature. PMID 30944468 DOI: 10.1038/S41586-019-1087-5  0.57
2019 Chang BJ, Kittisopikul M, Dean KM, Roudot P, Welf ES, Fiolka R. Universal light-sheet generation with field synthesis. Nature Methods. PMID 30804550 DOI: 10.1038/S41592-019-0327-9  0.663
2018 Fiolka RP, Dean KM, Driscoll M, Welf E, Danuser G. Quantitative Imaging of Cellular Morphodynamics and Signaling with Light-Sheet Microscopy Biophysical Journal. 114: 6a-7a. DOI: 10.1016/J.Bpj.2017.11.068  0.756
2017 Dean KM, Roudot P, Welf ES, Pohlkamp T, Garrelts G, Herz J, Fiolka R. Imaging Subcellular Dynamics with Fast and Light-Efficient Volumetrically Parallelized Microscopy. Optica. 4: 263-271. PMID 28944279 DOI: 10.1364/OPTICA.4.000263  0.734
2017 Dean KM, Fiolka R. Lossless Three-Dimensional Parallelization in Digitally Scanned Light-Sheet Fluorescence Microscopy. Scientific Reports. 7: 9332. PMID 28839150 DOI: 10.1038/S41598-017-08113-8  0.746
2016 Fiolka R. Clearer view for TIRF and oblique illumination microscopy. Optics Express. 24: 29556-29567. PMID 28059342 DOI: 10.1364/Oe.24.029556  0.554
2016 Chu J, Oh Y, Sens A, Ataie N, Dana H, Macklin JJ, Laviv T, Welf ES, Dean KM, Zhang F, Kim BB, Tang CT, Hu M, Baird MA, Davidson MW, ... ... Fiolka R, et al. A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo. Nature Biotechnology. PMID 27240196 DOI: 10.1038/Nbt.3550  0.699
2016 Dean KM, Roudot P, Reis CR, Welf ES, Mettlen M, Fiolka R. Diagonally Scanned Light-Sheet Microscopy for Fast Volumetric Imaging of Adherent Cells. Biophysical Journal. 110: 1456-65. PMID 27028654 DOI: 10.1016/J.Bpj.2016.01.029  0.747
2016 Welf ES, Driscoll MK, Dean KM, Schäfer C, Chu J, Davidson MW, Lin MZ, Danuser G, Fiolka R. Quantitative Multiscale Cell Imaging in Controlled 3D Microenvironments. Developmental Cell. 36: 462-75. PMID 26906741 DOI: 10.1016/J.Devcel.2016.01.022  0.741
2016 Dean KM, Driscoll MK, Welf ES, Fiolka R. Microscope technologies for quantitative imaging in 3D microenvironments Spie Newsroom. DOI: 10.1117/2.1201608.006670  0.661
2015 Dean KM, Roudot P, Welf ES, Danuser G, Fiolka R. Deconvolution-free Subcellular Imaging with Axially Swept Light Sheet Microscopy. Biophysical Journal. 108: 2807-15. PMID 26083920 DOI: 10.1016/J.Bpj.2015.05.013  0.782
2015 Dean KM, Roudot P, Welf ES, Danuser G, Fiolka R. Deconvolution-free Subcellular Imaging with Axially Swept Light Sheet Microscopy Biophysical Journal. 108: 2807-2815. DOI: 10.1016/j.bpj.2015.05.013  0.76
2014 Dean KM, Fiolka R. Uniform and scalable light-sheets generated by extended focusing. Optics Express. 22: 26141-52. PMID 25401646 DOI: 10.1364/OE.22.026141  0.702
2014 Fiolka R. Seeing more with structured illumination microscopy. Methods in Cell Biology. 123: 295-313. PMID 24974034 DOI: 10.1016/B978-0-12-420138-5.00016-1  0.555
2013 Wicker K, Mandula O, Best G, Fiolka R, Heintzmann R. Phase optimisation for structured illumination microscopy Optics Express. 21: 2032-2049. PMID 23389185 DOI: 10.1364/Oe.21.002032  0.424
2013 Fiolka R, Cui M. High speed phase distortion measurement and compensation for focusing in space and time Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8589. DOI: 10.1117/12.2001121  0.385
2013 Fiolka R. Three-dimensional live microscopy beyond the diffraction limit Journal of Optics. 15: 94002. DOI: 10.1088/2040-8978/15/9/094002  0.527
2012 Si K, Fiolka R, Cui M. Fluorescence imaging beyond the ballistic regime by ultrasound pulse guided digital phase conjugation. Nature Photonics. 6: 657-661. PMID 23241552 DOI: 10.1038/Nphoton.2012.205  0.499
2012 Fiolka R, Si K, Cui M. Parallel wavefront measurements in ultrasound pulse guided digital phase conjugation. Optics Express. 20: 24827-34. PMID 23187248 DOI: 10.1364/Oe.20.024827  0.425
2012 Si K, Fiolka R, Cui M. Breaking the spatial resolution barrier via iterative sound-light interaction in deep tissue microscopy. Scientific Reports. 2: 748. PMID 23087813 DOI: 10.1038/Srep00748  0.546
2012 Fiolka R, Shao L, Rego EH, Davidson MW, Gustafsson MG. Time-lapse two-color 3D imaging of live cells with doubled resolution using structured illumination. Proceedings of the National Academy of Sciences of the United States of America. 109: 5311-5. PMID 22431626 DOI: 10.1073/Pnas.1119262109  0.803
2012 Fiolka R, Si K, Cui M. Complex wavefront corrections for deep tissue focusing using low coherence backscattered light Optics Express. 20: 16532-16543. DOI: 10.1364/Oe.20.016532  0.437
2009 Fiolka R, Wicker K, Heintzmann R, Stemmer A. Simplified approach to diffraction tomography in optical microscopy. Optics Express. 17: 12407-17. PMID 19654642 DOI: 10.1364/Oe.17.012407  0.607
2009 Beck M, Fiolka R, Stemmer A. Variable phase retarder made of a dielectric elastomer actuator. Optics Letters. 34: 803-5. PMID 19282938 DOI: 10.1364/Ol.34.000803  0.538
2008 Münzenberg C, Rossi A, Feldman K, Fiolka R, Stemmer A, Kita-Tokarczyk K, Meier W, Sakamoto J, Lukin O, Schlüter AD. Synthesis of compounds presenting three and four anthracene units as potential connectors to mediate infinite lateral growth at the air/water interface. Chemistry (Weinheim An Der Bergstrasse, Germany). 14: 10797-807. PMID 18942696 DOI: 10.1002/Chem.200800478  0.51
2008 Stemmer A, Beck M, Fiolka R. Widefield fluorescence microscopy with extended resolution. Histochemistry and Cell Biology. 130: 807-17. PMID 18810482 DOI: 10.1007/S00418-008-0506-8  0.688
2008 Fiolka R, Beck M, Stemmer A. Structured illumination in total internal reflection fluorescence microscopy using a spatial light modulator. Optics Letters. 33: 1629-31. PMID 18628820 DOI: 10.1364/Ol.33.001629  0.627
2008 Fiolka R, Belyaev Y, Ewers H, Stemmer A. Even illumination in total internal reflection fluorescence microscopy using laser light. Microscopy Research and Technique. 71: 45-50. PMID 17886344 DOI: 10.1002/Jemt.20527  0.646
2007 Fiolka R, Stemmer A, Belyaev Y. Virtual slit scanning microscopy. Histochemistry and Cell Biology. 128: 499-505. PMID 17891411 DOI: 10.1007/S00418-007-0342-2  0.615
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