Jonathan A. King - Related publications

Affiliations: 
Biology Massachusetts Institute of Technology, Cambridge, MA, United States 
Area:
Protein Folding
Website:
https://biology.mit.edu/people/jonathan_king
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2020 Kraus A, Weskamp M, Zierles J, Balzer M, Busch R, Eisfeld J, Lambertz J, Nowaczyk MM, Narberhaus F. Arginine-Rich Small Proteins with a Domain of Unknown Function, DUF1127, Play a Role in Phosphate and Carbon Metabolism of Agrobacterium tumefaciens. Journal of Bacteriology. 202. PMID 33093235 DOI: 10.1128/JB.00309-20   
2020 Stollar EJ, Smith DP. Uncovering protein structure. Essays in Biochemistry. PMID 32975287 DOI: 10.1042/EBC20190042   
2020 Banerjee S. Effect of glyoxal and 1-methylisatin on stress-induced fibrillation of Hen Egg White Lysozyme: Insight into the anti-amyloidogenic property of the compounds with possible therapeutic implications. International Journal of Biological Macromolecules. PMID 33065156 DOI: 10.1016/j.ijbiomac.2020.10.017   
2020 Badal VD, Kundrotas PJ, Vakser IA. Text mining for modeling of protein complexes enhanced by machine learning. Bioinformatics (Oxford, England). PMID 32960948 DOI: 10.1093/bioinformatics/btaa823   
2020 Samoudi M, Kuo CC, Robinson CM, Shams-Ud-Doha K, Schinn SM, Kol S, Weiss L, Petersen Bjorn S, Voldborg BG, Rosa Campos A, Lewis NE. In situ detection of protein interactions for recombinant therapeutic enzymes. Biotechnology and Bioengineering. PMID 33169829 DOI: 10.1002/bit.27621   
2020 Määttä TA, Rettel M, Sridharan S, Helm D, Kurzawa N, Stein F, Savitski MM. Aggregation and disaggregation features of the human proteome. Molecular Systems Biology. 16: e9500. PMID 33022891 DOI: 10.15252/msb.20209500   
2020 Kocyła A, Tran JB, Krężel A. Galvanization of Protein-Protein Interactions in a Dynamic Zinc Interactome. Trends in Biochemical Sciences. PMID 32958327 DOI: 10.1016/j.tibs.2020.08.011   
2020 Lipsh-Sokolik R, Listov D, Fleishman SJ. The AbDesign computational pipeline for modular backbone assembly and design of binders and enzymes. Protein Science : a Publication of the Protein Society. PMID 33040418 DOI: 10.1002/pro.3970   
2020 Kumar A, Dubey R, Singhai S, Konar AD, Basu A. Structural Characterization with Light Scattering: A Tool for Rationally designing Protein Formulations. Analytical Biochemistry. 113979. PMID 33035463 DOI: 10.1016/j.ab.2020.113979   
2020 Kang TH, Seong BL. Solubility, Stability, and Avidity of Recombinant Antibody Fragments Expressed in Microorganisms. Frontiers in Microbiology. 11: 1927. PMID 33101218 DOI: 10.3389/fmicb.2020.01927   
2020 Niu B, Mackness BC, Zitzewitz JA, Matthews CR, Gross ML. Trifluoroethanol Partially Unfolds G93A SOD1 Leading to Protein Aggregation: A Study by Native Mass Spectrometry and FPOP Protein Footprinting. Biochemistry. PMID 32924445 DOI: 10.1021/acs.biochem.0c00425   
2020 Mirela-Bota P, Aguirre-Plans J, Meseguer A, Galletti C, Segura J, Planas-Iglesias J, Garcia-Garcia J, Guney E, Oliva B, Fernandez-Fuentes N. Galaxy InteractoMIX: An Integrated Computational Platform for the Study of Protein-Protein Interaction Data. Journal of Molecular Biology. PMID 32976910 DOI: 10.1016/j.jmb.2020.09.015   
2020 Arooj M, Shehadi I, Nassab CN, Mohamed AA. Physicochemical stability study of protein-benzoic acid complexes using molecular dynamics simulations. Amino Acids. 52: 1353-1362. PMID 33006112 DOI: 10.1007/s00726-020-02897-2   
2020 Miyamae Y, Chen LC, Utsugi Y, Farrants H, Wandless TJ. A Method for Conditional Regulation of Protein Stability in Native or Near-Native Form. Cell Chemical Biology. PMID 33007216 DOI: 10.1016/j.chembiol.2020.09.004   
2020 Wegner LH, Hao Z. A quantitative approach relating emergent features of complex traits to protein expression. Progress in Biophysics and Molecular Biology. PMID 33035591 DOI: 10.1016/j.pbiomolbio.2020.10.002   
2020 Fleissner F, Kumar S, Klein N, Wirth D, Dhiman R, Schneider D, Bonn M, Parekh SH. Tension Causes Unfolding of Intracellular Vimentin Intermediate Filaments. Advanced Biosystems. e2000111. PMID 33135378 DOI: 10.1002/adbi.202000111   
2020 Izutsu KI, Usui A, Yamamoto E, Abe Y, Yoshida H, Goda Y. Effect of Complex Coacervation with Hyaluronic Acid on Protein Transition in a Subcutaneous Injection Site Model System. Chemical & Pharmaceutical Bulletin. 68: 1109-1112. PMID 33132379 DOI: 10.1248/cpb.c20-00585   
2020 Xue W, Zhang SX, He WT, Hong JY, Jiang LL, Hu HY. Domain interactions reveal auto-inhibition of the deubiquitinating enzyme USP19 and its activation by HSP90 in modulation of huntingtin aggregation. The Biochemical Journal. PMID 33094816 DOI: 10.1042/BCJ20200536   
2020 Ferdous N, Reza MN, Emon MTH, Islam MS, Mohiuddin AKM, Hossain MU. Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of Streptomyces coelicolor A3(2). Genomics & Informatics. 18: e28. PMID 33017872 DOI: 10.5808/GI.2020.18.3.e28   
2020 Ferdous N, Reza MN, Emon MTH, Islam MS, Mohiuddin AKM, Hossain MU. Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of Streptomyces coelicolor A3(2). Genomics & Informatics. 18: e28. PMID 33017872 DOI: 10.5808/GI.2020.18.3.e28   
2020 Pal S, Sengupta K. Computational-based insights into the phylogeny, structure, and function of alkane-1-monooxygenase. 3 Biotech. 10: 391. PMID 32832341 DOI: 10.1007/s13205-020-02388-x   
2020 Saylor K, Waldman A, Gillam F, Zhang C. Multi-epitope insert modulates solubility-based and chromatographic purification of human papilloma virus 16 L1-based vaccine without inhibiting virus-like particle assembly. Journal of Chromatography. A. 1631: 461567. PMID 32980800 DOI: 10.1016/j.chroma.2020.461567   
2020 Tan F, Sun N, Zhang L, Wu J, Xiao S, Tan Q, Uversky VN, Liu Y. Functional characterization of an unknown soybean intrinsically disordered protein in vitro and in Escherichia coli. International Journal of Biological Macromolecules. PMID 33137381 DOI: 10.1016/j.ijbiomac.2020.10.211   
2020 Shin G, Lim SI. Site-specific proximity ligation provides molecular insights into biologically relevant interfaces of protein-protein interaction. Biochemical and Biophysical Research Communications. PMID 33008597 DOI: 10.1016/j.bbrc.2020.09.097   
2020 Shin G, Lim SI. Site-specific proximity ligation provides molecular insights into biologically relevant interfaces of protein-protein interaction. Biochemical and Biophysical Research Communications. PMID 33008597 DOI: 10.1016/j.bbrc.2020.09.097   
2020 Naidu KT, Rao DK, Prabhu NP. Cryo vs Thermo: Duality of Ethylene Glycol on the Stability of Proteins. The Journal of Physical Chemistry. B. PMID 33143422 DOI: 10.1021/acs.jpcb.0c06247   
2020 Tian H, Trozzi F, Zoltowski BD, Tao P. Deciphering the Allosteric Process of Aureochrome 1a LOV Domain. The Journal of Physical Chemistry. B. PMID 32970438 DOI: 10.1021/acs.jpcb.0c05842   
2020 Agostino M. Comprehensive analysis of carbohydrate-protein recognition in the Protein Data Bank. Carbohydrate Research. 498: 108180. PMID 33096507 DOI: 10.1016/j.carres.2020.108180   
2020 Di Rienzo L, Milanetti E, Testi C, Montemiglio LC, Baiocco P, Boffi A, Ruocco G. A novel strategy for molecular interfaces optimization: The case of Ferritin-Transferrin receptor interaction. Computational and Structural Biotechnology Journal. 18: 2678-2686. PMID 33101606 DOI: 10.1016/j.csbj.2020.09.020   
2020 Fiorentini F, Esposito D, Rittinger K. Does it take two to tango? RING domain self-association and activity in TRIM E3 ubiquitin ligases. Biochemical Society Transactions. PMID 33170204 DOI: 10.1042/BST20200383   
2020 Guo F, Lin L, He Z, Zheng ZP. Storage stability of soy protein isolate powders containing soluble protein aggregates formed at varying pH. Food Science & Nutrition. 8: 5275-5283. PMID 33133530 DOI: 10.1002/fsn3.1759   
2020 Wu S, Tian C, Liu P, Guo D, Zheng W, Huang X, Zhang Y, Liu L. Effects of SARS-CoV-2 mutations on protein structures and intraviral protein-protein interactions. Journal of Medical Virology. PMID 33090512 DOI: 10.1002/jmv.26597   
2020 Wu S, Tian C, Liu P, Guo D, Zheng W, Huang X, Zhang Y, Liu L. Effects of SARS-CoV-2 mutations on protein structures and intraviral protein-protein interactions. Journal of Medical Virology. PMID 33090512 DOI: 10.1002/jmv.26597   
2020 Das A, Basak P, Pramanik A, Majumder R, Ghosh A, Hazra S, Guria M, Bhattacharyya M, Banik SP. Ribosylation induced structural changes in Bovine Serum Albumin: understanding high dietary sugar induced protein aggregation and amyloid formation. Heliyon. 6: e05053. PMID 33015393 DOI: 10.1016/j.heliyon.2020.e05053   
2020 Das S, Lin YH, Vernon RM, Forman-Kay JD, Chan HS. Comparative roles of charge, , and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 33139563 DOI: 10.1073/pnas.2008122117   
2020 Mebratu YA, Negasi ZH, Dutta S, Rojas-Quintero J, Tesfaigzi Y. Adaptation of Proteasomes and Lysosomes to Cellular Environments. Cells. 9. PMID 33019542 DOI: 10.3390/cells9102221   
2020 Bandekar D, Mohapatra S, Hazra M, Hazra S, Biswas S. N-terminal truncation of VC0395_0300 protein from Vibrio cholerae does not lead to loss of diguanylate cyclase activity. Biophysical Chemistry. 268: 106493. PMID 33152620 DOI: 10.1016/j.bpc.2020.106493   
2020 Wang Q, Tang Y, Yang Y, Lei L, Zhao J, Zhang Y, Li L, Wang Q, Ming J. Combined Effects of Quercetin and NaCl Concentrations on Wheat Gliadin Structure and Physicochemical Properties. Journal of the Science of Food and Agriculture. PMID 33063332 DOI: 10.1002/jsfa.10877   
2020 Winter P, Stubenvoll S, Scheiblhofer S, Joubert IA, Strasser L, Briganser C, Soh WT, Hofer F, Kamenik AS, Dietrich V, Michelini S, Laimer J, Lackner P, Horejs-Hoeck J, Tollinger M, et al. Design of Phl p 6 Variants With Altered Fold-Stability Significantly Impacts Antigen Processing, Immunogenicity and Immune Polarization. Frontiers in Immunology. 11: 1824. PMID 33013833 DOI: 10.3389/fimmu.2020.01824   
2020 Chen CH, Chen YC, Huang CH, Wang SH, Lin JS, Lo SC, Huang CC. Exploring Potential Proteomic Biomarkers for Prognosis of Infective Endocarditis through Profiled Autoantibodies by an Immunomics Protein Array Technique. The Heart Surgery Forum. 23: E555-E573. PMID 32990583 DOI: 10.1532/hsf.3017   
2020 Elayan H, Eckford AW, Adve R. Information Rates of Controlled Protein Interactions Using Terahertz Communication. Ieee Transactions On Nanobioscience. PMID 32886612 DOI: 10.1109/TNB.2020.3021825   
2020 Aponte-Ubillus JJ, Barajas D, Sterling H, Aghajanirefah A, Bardliving C, Peltier J, Shamlou P, Roy M, Gold D. Proteome profiling and vector yield optimization in a recombinant adeno-associated virus-producing yeast model. Microbiologyopen. e1136. PMID 33166081 DOI: 10.1002/mbo3.1136   
2020 Klickstein JA, Mukkavalli S, Raman M. AggreCount: An unbiased image analysis tool for identifying and quantifying cellular aggregates in a spatially-defined manner. The Journal of Biological Chemistry. PMID 33082144 DOI: 10.1074/jbc.RA120.015398   
2020 McCafferty CL, Marcotte EM, Taylor DW. Simplified geometric representations of protein structures identify complementary interaction interfaces. Proteins. PMID 33140424 DOI: 10.1002/prot.26020   
2020 Zheng Q, Wang M, Zhang L, Ahmad W, Li H, Tong Y, Zheng G, Zhu S. Topology engineering via protein catenane construction to strengthen an industrial biocatalyst. Journal of Biotechnology. PMID 33065139 DOI: 10.1016/j.jbiotec.2020.10.012   
2020 Garaizar A, Sanchez-Burgos I, Collepardo-Guevara R, Espinosa JR. Expansion of Intrinsically Disordered Proteins Increases the Range of Stability of Liquid-Liquid Phase Separation. Molecules (Basel, Switzerland). 25. PMID 33076213 DOI: 10.3390/molecules25204705   
2020 Ji L, Wang N, Ma J, Cheng Y, Wang H, Sun J, Yan Y. Porcine deltacoronavirus nucleocapsid protein species-specifically suppressed IRF7-induced type I interferon production via ubiquitin-proteasomal degradation pathway. Veterinary Microbiology. 250: 108853. PMID 32992291 DOI: 10.1016/j.vetmic.2020.108853   
2020 Kumawat M, Singh R, Karuna I, Ahlawat N, Ahlawat S. Salmonella Typhimurium peptidyl-prolyl cis-trans isomerase C (PPIase C) plays a substantial role in protein folding to maintain the protein structure. World Journal of Microbiology & Biotechnology. 36: 168. PMID 33029674 DOI: 10.1007/s11274-020-02943-x   
2020 Biswal AK, Panda PK, Yang JM, Misra PK. Isolation, process optimisation and characterisation of the protein from the de-oiled cake flour of . Iet Nanobiotechnology. 14: 654-661. PMID 33108320 DOI: 10.1049/iet-nbt.2020.0029   
2020 Ayers JI, Borchelt DR. Phenotypic diversity in ALS and the role of poly-conformational protein misfolding. Acta Neuropathologica. PMID 32930869 DOI: 10.1007/s00401-020-02222-x