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Jerome P. Nilmeier, Ph.D. - Publications

Affiliations: 
2008 Biophysics University of California, San Francisco, San Francisco, CA 
Area:
General Biophysics
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9 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Carpenter TS, Kirshner DA, Lau EY, Wong SE, Nilmeier JP, Lightstone FC. A method to predict blood-brain barrier permeability of drug-like compounds using molecular dynamics simulations. Biophysical Journal. 107: 630-41. PMID 25099802 DOI: 10.1016/J.Bpj.2014.06.024  0.604
2014 Nilmeier JP, Marian J. A rigorous sequential update strategy for parallel kinetic Monte Carlo simulation Computer Physics Communications. 185: 2479-2486. DOI: 10.1016/J.Cpc.2014.05.024  0.392
2013 Kirshner DA, Nilmeier JP, Lightstone FC. Catalytic site identification--a web server to identify catalytic site structural matches throughout PDB Nucleic Acids Research. 41. PMID 23680785 DOI: 10.1093/Nar/Gkt403  0.377
2013 Nilmeier JP, Kirshner DA, Wong SE, Lightstone FC. Rapid Catalytic Template Searching as an Enzyme Function Prediction Procedure Plos One. 8. PMID 23675414 DOI: 10.1371/Journal.Pone.0062535  0.626
2011 Nilmeier JP, Crooks GE, Minh DD, Chodera JD. Nonequilibrium candidate Monte Carlo is an efficient tool for equilibrium simulation. Proceedings of the National Academy of Sciences of the United States of America. 108: E1009-18. PMID 22025687 DOI: 10.1073/Pnas.1106094108  0.392
2011 Nilmeier J, Hua L, Coutsias EA, Jacobson MP. Assessing protein loop flexibility by hierarchical Monte Carlo sampling. Journal of Chemical Theory and Computation. 7: 1564-1574. PMID 21743800 DOI: 10.1021/Ct1006696  0.639
2010 Sellers BD, Nilmeier JP, Jacobson MP. Antibodies as a model system for comparative model refinement. Proteins. 78: 2490-505. PMID 20602354 DOI: 10.1002/Prot.22757  0.623
2009 Nilmeier J, Jacobson MP. Monte Carlo Sampling with Hierarchical Move Sets: POSH Monte Carlo. Journal of Chemical Theory and Computation. 5: 1968-84. PMID 26613140 DOI: 10.1021/Ct8005166  0.575
2008 Nilmeier J, Jacobson M. Multiscale Monte Carlo Sampling of Protein Sidechains: Application to Binding Pocket Flexibility. Journal of Chemical Theory and Computation. 4: 835-846. PMID 19119325 DOI: 10.1021/Ct700334A  0.582
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