B. P. Gangamani - Related publications

1997 CSIR-National Chemical Laboratory, Pune, India 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Lu K, Liu C, Liu Y, Luo A, Chen J, Lei Z, Kong J, Xiao X, Zhang S, Wang YZ, Ma L, Dou SX, Wang PY, Li M, Li G, et al. Curaxin-Induced DNA Topology Alterations Trigger the Distinct Binding Response of CTCF and FACT at the Single-Molecule Level. Biochemistry. PMID 33570402 DOI: 10.1021/acs.biochem.1c00014   
2021 Medan J, Sleebs BE, Lackovic K, Watson KG, Evison BJ, Phillips DR, Cutts SM. Development of an automated assay for accelerated in vitro detection of DNA adduct-inducing and crosslinking agents. Bioorganic & Medicinal Chemistry Letters. 127813. PMID 33486050 DOI: 10.1016/j.bmcl.2021.127813   
2021 Chen JY, Yang LY, Liu ZJ, Wei QX, Zhang Y, Wu B, Zhong GX, Fu LX, Lin XH, Weng XH, Xu XW. DNA Nanosieve-Based Regenerative Electrochemical Biosensor Utilizing Nucleic Acid Flexibility for Accurate Allele Typing in Clinical Samples. Acs Sensors. PMID 33657808 DOI: 10.1021/acssensors.0c02720   
2021 Li F, Yu W, Zhang J, Dong Y, Ding X, Ruan X, Gu Z, Yang D. Spatiotemporally programmable cascade hybridization of hairpin DNA in polymeric nanoframework for precise siRNA delivery. Nature Communications. 12: 1138. PMID 33602916 DOI: 10.1038/s41467-021-21442-7   
2021 Weinhold E, Chakraborty B. DNA modification and visualization on an origami-based enzyme nano-factory. Nanoscale. PMID 33471009 DOI: 10.1039/d0nr07618j   
2021 Chandrasekaran AR. Nuclease resistance of DNA nanostructures. Nature Reviews. Chemistry. 1-15. PMID 33585701 DOI: 10.1038/s41570-021-00251-y   
2021 Cai R, Zhang S, Chen L, Li M, Zhang Y, Zhou N. Self-Assembled DNA Nanoflowers Triggered by a DNA Walker for Highly Sensitive Electrochemical Detection of . Acs Applied Materials & Interfaces. PMID 33470807 DOI: 10.1021/acsami.0c22062   
2021 Aktas GB, Ribera A, Skouridou V, Masip L. DNA immobilization and detection using DNA binding proteins. Analytical and Bioanalytical Chemistry. PMID 33501551 DOI: 10.1007/s00216-021-03162-5   
2021 Mahalakshmi G, Selvakumar B, Vennila KN, Rao PL, Madhuri S, Seenivasaperumal M, Elango KP. Spectroscopic Studies on the Interaction of Naphthyridines with DNA and Fluorescent Detection of DNA in Agarose Gel. Journal of Fluorescence. PMID 33389419 DOI: 10.1007/s10895-020-02658-0   
2021 Rattu P, Belzunces B, Haynes T, Skylaris CK, Khalid S. Translocation of flexible and tensioned ssDNA through designed hydrophobic nanopores with two constrictions. Nanoscale. PMID 33434242 DOI: 10.1039/d0nr04890a   
2021 Cheng M, Qiu D, Tamon L, Ištvánková E, Víšková P, Amrane S, Guédin A, Chen J, Lacroix L, Ju H, Trantírek L, Sahakyan AB, Zhou J, Mergny JL. Thermal and pH stabilities of i-DNA: confronting in vitro experiments with models and in-cell NMR data. Angewandte Chemie (International Ed. in English). PMID 33605024 DOI: 10.1002/anie.202016801   
2021 Kitchner E, Chavez J, Ceresa L, Bus MM, Budowle B, Gryczynski Z. A novel approach for visualization and localization of small amounts of DNA on swabs to improve DNA collection and recovery process. The Analyst. PMID 33393553 DOI: 10.1039/d0an02043e   
2021 Xu J, Wang X, Zhang X, Yao L, Qin P, Lu Y, Chen Y, Zhang Y, Yan Y, Chen W. Periodically programmed building and collapse of DNA networks enables an ultrahigh signal amplification effect for ultrasensitive nucleic acids analysis. Analytica Chimica Acta. 1150: 338221. PMID 33583542 DOI: 10.1016/j.aca.2021.338221   
2021 Iaccarino N, Cheng M, Qiu D, Pagano B, Amato J, Di Porzio A, Zhou J, Randazzo A, Mergny JL. Effects of sequence and base composition on the CD and TDS profiles of i-DNA. Angewandte Chemie (International Ed. in English). PMID 33617090 DOI: 10.1002/anie.202016822   
2021 Zhang Z, Yu S, Zuo H. DNA Ring-Opening Polymerization Driven by Base Stacking. Chembiochem : a European Journal of Chemical Biology. PMID 33404185 DOI: 10.1002/cbic.202000776   
2021 Chen K, Gularek F, Liu B, Weinhold E, Keyser UF. Electrical DNA Sequence Mapping Using Oligodeoxynucleotide Labels and Nanopores. Acs Nano. PMID 33478224 DOI: 10.1021/acsnano.0c07947   
2021 Wu JT, Liu R, Chen YR, Zheng XQ, Wu ZS. The hierarchical assembly of a multi-level DNA ring-based nanostructure in a precise order and its application for screening tumor cells. Biomaterials Science. PMID 33533777 DOI: 10.1039/d0bm00085j   
2021 Cameron G, Yardimci H. Studying chromosome biology with single-molecule resolution in Xenopus laevis egg extracts. Essays in Biochemistry. PMID 33438722 DOI: 10.1042/EBC20200026   
2021 Kim SH, Kim H, Jeong H, Yoon TY. Encoding Multiple Virtual Signals in DNA Barcodes with Single-Molecule FRET. Nano Letters. PMID 33586985 DOI: 10.1021/acs.nanolett.0c04502   
2021 Hao N, Sullivan AE, Shearwin KE, Dodd IB. The loopometer: a quantitative in vivo assay for DNA-looping proteins. Nucleic Acids Research. PMID 33511418 DOI: 10.1093/nar/gkaa1284   
2021 Hnízda A, Tesina P, Nguyen TB, Kukačka Z, Kater L, Chaplin A, Beckmann R, Ascher DB, Novák P, Blundell TL. SAP domain forms a flexible part of DNA aperture in Ku70/80. The Febs Journal. PMID 33511782 DOI: 10.1111/febs.15732   
2021 Wang M, Ngo V, Wang W. Deciphering the genetic code of DNA methylation. Briefings in Bioinformatics. PMID 33432324 DOI: 10.1093/bib/bbaa424   
2021 Zhang M, Yang C, Tasan I, Zhao H. Expanding the Potential of Mammalian Genome Engineering Targeted DNA Integration. Acs Synthetic Biology. PMID 33596056 DOI: 10.1021/acssynbio.0c00576   
2021 Zheng H, Botos I, Clausse V, Nikolayevskiy H, Rastede EE, Fouz MF, Mazur SJ, Appella DH. Conformational constraints of cyclopentane peptide nucleic acids facilitate tunable binding to DNA. Nucleic Acids Research. PMID 33406227 DOI: 10.1093/nar/gkaa1249   
2021 McKie SJ, Neuman KC, Maxwell A. DNA topoisomerases: Advances in understanding of cellular roles and multi-protein complexes via structure-function analysis. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e2000286. PMID 33480441 DOI: 10.1002/bies.202000286   
2021 Dai L, Liu P, Hu X, Zhao X, Shao G, Tian Y. DNA origami: an outstanding platform for functions in nanophotonics and cancer therapy. The Analyst. PMID 33595553 DOI: 10.1039/d0an02160a   
2021 Wang R, Li J, Niu DB, Xu FY, Zeng XA. Protective effect of baicalein on DNA oxidative damage and its binding mechanism with DNA: An in vitro and molecular docking study. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 253: 119605. PMID 33667888 DOI: 10.1016/j.saa.2021.119605   
2021 Burgess JT, Cheong CM, Suraweera A, Sobanski T, Beard S, Dave K, Rose M, Boucher D, Croft LV, Adams MN, O'Byrne K, Richard DJ, Bolderson E. Barrier-to-autointegration-factor (Banf1) modulates DNA double-strand break repair pathway choice via regulation of DNA-dependent kinase (DNA-PK) activity. Nucleic Acids Research. PMID 33660778 DOI: 10.1093/nar/gkab110   
2021 Hao Y, Li Y, Song L, Deng Z. Flash Synthesis of Spherical Nucleic Acids with Record DNA Density. Journal of the American Chemical Society. PMID 33599474 DOI: 10.1021/jacs.1c00568   
2021 Maeda R, Bando T, Sugiyama H. Application of DNA-Alkylating Pyrrole-Imidazole Polyamides for Cancer Treatment. Chembiochem : a European Journal of Chemical Biology. PMID 33453075 DOI: 10.1002/cbic.202000752   
2021 Xu W, Lin Y, Zhao K, Li H, Tian Y, Ngatia JN, Ma Y, Sahu SK, Guo H, Guo X, Xu YC, Liu H, Kristiansen K, Lan T, Zhou X. An efficient pipeline for ancient DNA mapping and recovery of endogenous ancient DNA from whole-genome sequencing data. Ecology and Evolution. 11: 390-401. PMID 33437437 DOI: 10.1002/ece3.7056   
2021 Felipe C, Shin J, Kolomeisky AB. DNA Looping and DNA Conformational Fluctuations Can Accelerate Protein Target Search. The Journal of Physical Chemistry. B. PMID 33570939 DOI: 10.1021/acs.jpcb.0c09599   
2021 Scozzi D, Cano M, Ma L, Zhou D, Zhu JH, O'Halloran JA, Goss CW, Rauseo AM, Liu Z, Sahu SK, Peritore V, Rocco M, Ricci A, Amodeo R, Aimati L, et al. Circulating mitochondrial DNA is an early indicator of severe illness and mortality from COVID-19. Jci Insight. PMID 33444289 DOI: 10.1172/jci.insight.143299   
2021 Li Y, Yuan J. Role of deubiquitinating enzymes in DNA double-strand break repair. Journal of Zhejiang University. Science. B. 22: 63-72. PMID 33448188 DOI: 10.1631/jzus.B2000309   
2021 Fang N, Wang K, Tong D. An Algorithm for Gene Fragment Reconstruction. Interdisciplinary Sciences, Computational Life Sciences. PMID 33609237 DOI: 10.1007/s12539-021-00419-6   
2021 Shi K, Moeller NH, Banerjee S, McCann JL, Carpenter MA, Yin L, Moorthy R, Orellana K, Harki DA, Harris RS, Aihara H. Structural basis for recognition of distinct deaminated DNA lesions by endonuclease Q. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33658373 DOI: 10.1073/pnas.2021120118   
2021 Ishida H, Kono H. Torsional stress can regulate the unwrapping of two outer half superhelical turns of nucleosomal DNA. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33558240 DOI: 10.1073/pnas.2020452118   
2021 Pyne ALB, Noy A, Main KHS, Velasco-Berrelleza V, Piperakis MM, Mitchenall LA, Cugliandolo FM, Beton JG, Stevenson CEM, Hoogenboom BW, Bates AD, Maxwell A, Harris SA. Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides. Nature Communications. 12: 1053. PMID 33594049 DOI: 10.1038/s41467-021-21243-y   
2021 Vatta M, Lyons B, Heney KA, Lidster T, Merrill AR. Mapping the DNA-Binding Motif of Scabin Toxin, a Guanine Modifying Enzyme from . Toxins. 13. PMID 33450958 DOI: 10.3390/toxins13010055   
2021 Wang D, Yu L, Huang CM, Arya G, Chang S, Ke Y. Programmable Transformations of DNA Origami Made of Small Modular Dynamic Units. Journal of the American Chemical Society. PMID 33529009 DOI: 10.1021/jacs.0c10576   
2021 Matange K, Tuck JM, Keung AJ. DNA stability: a central design consideration for DNA data storage systems. Nature Communications. 12: 1358. PMID 33649304 DOI: 10.1038/s41467-021-21587-5   
2021 Choi WL, Mok YG, Huh JH. Application of 5-Methylcytosine DNA Glycosylase to the Quantitative Analysis of DNA Methylation. International Journal of Molecular Sciences. 22. PMID 33499041 DOI: 10.3390/ijms22031072   
2021 Kumari N, Raghavan SC. G-quadruplex DNA structures and their relevance in radioprotection. Biochimica Et Biophysica Acta. General Subjects. 1865: 129857. PMID 33508382 DOI: 10.1016/j.bbagen.2021.129857   
2021 Vaidyanathan S, Weerakoon-Ratnayake KM, Uba FI, Hu B, Kaufman D, Choi J, Park S, Soper SA. Thermoplastic nanofluidic devices for identifying abasic sites in single DNA molecules. Lab On a Chip. PMID 33651049 DOI: 10.1039/d0lc01038c   
2021 Yusof R, Jumbri K, Ahmad H, Abdulmalek E, Abdul Rahman MB. Binding of tetrabutylammonium bromide based deep eutectic solvent to DNA by spectroscopic analysis. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 253: 119543. PMID 33636491 DOI: 10.1016/j.saa.2021.119543   
2021 Li G, Deng L, Huang N, Sun F. The Biological Roles of lncRNAs and Future Prospects in Clinical Application. Diseases (Basel, Switzerland). 9. PMID 33450825 DOI: 10.3390/diseases9010008   
2021 Cao B, Zhang X, Wu J, Wang B, Zhang Q, Wei X. Minimum free energy coding for DNA storage. Ieee Transactions On Nanobioscience. PMID 33534710 DOI: 10.1109/TNB.2021.3056351   
2021 Xavier C, Eduardoff M, Bertoglio B, Amory C, Berger C, Casas-Vargas A, Pallua J, Parson W. Evaluation of DNA Extraction Methods Developed for Forensic and Ancient DNA Applications Using Bone Samples of Different Age. Genes. 12. PMID 33499220 DOI: 10.3390/genes12020146   
2021 Mohammad M, Al Rasid Gazi H, Pandav K, Pandya P, Islam MM. Evidence for Dual Site Binding of Nile Blue A toward DNA: Spectroscopic, Thermodynamic, and Molecular Modeling Studies. Acs Omega. 6: 2613-2625. PMID 33553879 DOI: 10.1021/acsomega.0c04775   
2021 Mohammad M, Al Rasid Gazi H, Pandav K, Pandya P, Islam MM. Evidence for Dual Site Binding of Nile Blue A toward DNA: Spectroscopic, Thermodynamic, and Molecular Modeling Studies. Acs Omega. 6: 2613-2625. PMID 33553879 DOI: 10.1021/acsomega.0c04775